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Homology
BLAST of mRNA_E-fasciculatus_F_contig1324.2443.1 vs. uniprot
Match: D8LBM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM9_ECTSI) HSP 1 Score: 697 bits (1799), Expect = 1.590e-239 Identity = 380/461 (82.43%), Postives = 390/461 (84.60%), Query Frame = 2
Query: 707 RVRVERGDAVLVWDQSGIVHGYTRWEGCGDRRTAAGSITSRDVGGGGAGSGGGATSHVSILTAESREGLETLVPELRGIDSPVSCLACDAVEEGDGWARRRRRVLAGCMESARCVSLHDAASGRRETAVASVPGPVGAVALNARPRFMPYDRHVDDRWGGNVAGFACTELDMLAWLVEGGNAXXXXXXXXXXRWYTGSLPLGDAGGGS-DQVTCIECADFFRDGSTAVAIGTNLGKVIVCSAEPN-GGDAGGLAGGLEEVGGVDTGSSGGGEGLVFGLEVDGDESSEEDEAGCSSNPVQPPSRRGESVSPRPPGLVSSAADRQFHSRRVADRQGGSGSREKQQQQRPLLTARWQRDLPHGVLRIAFGDFNHDGVKELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQPKEDDGGADFMSSASDND-GGRDEGSRPRGVGSSGVEAHHGVGATL-DAAE 2077
RVRVERGDAVLVWDQSG+VHGYTRWEG GDRRT AT HVSILTAESRE LETL+PELRGIDSPVSCLA DAVEEGDGWARRRRRVLAGCMESARCVSLHDAASGRRETAVASVPGPVGAVALNARPRFMPYDRHVDDRWGGNVAGFACTELDMLAWLVEGGNA RWYTGSLPL +AGGG DQVTC+ECADFFRDGSTAVAIGTNLGKVIV SAEPN GG GGLAGGLEEVG VD G GGEGLVFGLEVDGD+SSEEDEAGCSSNPVQPPSRRG+SVSPRP GL SS+ADRQFHSRRVADRQG RPLLTARWQRDLPHGVLRIAFGDFNHDGV+ELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQPKEDDGG DFMSSASDND GR EGSRPRG +SG+E H GVGA D AE
Sbjct: 226 RVRVERGDAVLVWDQSGMVHGYTRWEGGGDRRTXXXXXXXXXXXXXXTXXXXXATGHVSILTAESRESLETLMPELRGIDSPVSCLAFDAVEEGDGWARRRRRVLAGCMESARCVSLHDAASGRRETAVASVPGPVGAVALNARPRFMPYDRHVDDRWGGNVAGFACTELDMLAWLVEGGNAAGAGVGG---RWYTGSLPLVEAGGGGGDQVTCMECADFFRDGSTAVAIGTNLGKVIVYSAEPNNGGGEGGLAGGLEEVGRVDAGGRSGGEGLVFGLEVDGDDSSEEDEAGCSSNPVQPPSRRGDSVSPRPSGLASSSADRQFHSRRVADRQGXXXXXXXXXXXRPLLTARWQRDLPHGVLRIAFGDFNHDGVRELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQPKEDDGG-DFMSSASDNDHDGRHEGSRPRGADASGMETH-GVGAAASDGAE 681
BLAST of mRNA_E-fasciculatus_F_contig1324.2443.1 vs. uniprot
Match: A0A397SVU6_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SVU6_9GLOM) HSP 1 Score: 59.3 bits (142), Expect = 1.880e-5 Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 2
Query: 1757 WQRDLPHGVLRIAFGDFNHDGVKELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQPK 1936
WQR H + RI D N DG++EL+VATQYGVH+ +P+ R K ++ + +L K
Sbjct: 323 WQRSFTHPIYRITGLDLNEDGIEELIVATQYGVHILQPNLYKAKERLLKVLNEIDILNKK 382
BLAST of mRNA_E-fasciculatus_F_contig1324.2443.1 vs. uniprot
Match: UPI001C1CE0F7 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1CE0F7) HSP 1 Score: 56.6 bits (135), Expect = 2.710e-5 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 2
Query: 1757 WQRDLPHGVLRIAFGDFNHDGVKELVVATQYGVHVFRPDYRAEASRFAKTMHALKML 1927
WQR H + RIA D N DG++EL+VATQYGVH+ +P+ + K + + L
Sbjct: 128 WQRSFTHPIYRIASLDLNEDGIEELIVATQYGVHILQPNLSKAKEQLLKVLDEIDNL 184
BLAST of mRNA_E-fasciculatus_F_contig1324.2443.1 vs. uniprot
Match: A0A2P4PDC6_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=A0A2P4PDC6_RHIID) HSP 1 Score: 56.6 bits (135), Expect = 9.870e-5 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 2
Query: 1757 WQRDLPHGVLRIAFGDFNHDGVKELVVATQYGVHVFRPDYRAEASRFAKTMHALKML 1927
WQR H + RIA D N DG++EL+VATQYGVH+ +P+ + K + + L
Sbjct: 256 WQRSFTHPIYRIASLDLNEDGIEELIVATQYGVHILQPNLSKAKEQLLKVLDEIDNL 312
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_003370.1 |
| Exons | 2 |
| Model size | 2712 |
| Cds size | 1500 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1324.2443.1 >prot_E-fasciculatus_F_contig1324.2443.1 ID=prot_E-fasciculatus_F_contig1324.2443.1|Name=mRNA_E-fasciculatus_F_contig1324.2443.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=500bp
MLPRSRTSSEGGGGGGGGGGGGAGEGAGASSSSSPTNNSNNSRVRVERGD AVLVWDQSGIVHGYTRWEGCGDRRTAAGSITSRDVGGGGAGSGGGATSHV SILTAESREGLETLVPELRGIDSPVSCLACDAVEEGDGWARRRRRVLAGC MESARCVSLHDAASGRRETAVASVPGPVGAVALNARPRFMPYDRHVDDRW GGNVAGFACTELDMLAWLVEGGNAAGGGGGGGGGRWYTGSLPLGDAGGGS DQVTCIECADFFRDGSTAVAIGTNLGKVIVCSAEPNGGDAGGLAGGLEEV GGVDTGSSGGGEGLVFGLEVDGDESSEEDEAGCSSNPVQPPSRRGESVSP RPPGLVSSAADRQFHSRRVADRQGGSGSREKQQQQRPLLTARWQRDLPHG VLRIAFGDFNHDGVKELVVATQYGVHVFRPDYRAEASRFAKTMHALKMLQ PKEDDGGADFMSSASDNDGGRDEGSRPRGVGSSGVEAHHGVGATLDAAE* back to topmRNA from alignment at E-fasciculatus_F_contig1324:109..3491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1324.2443.1 ID=mRNA_E-fasciculatus_F_contig1324.2443.1|Name=mRNA_E-fasciculatus_F_contig1324.2443.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3383bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1324:109..3491+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ACATCGGCGTTCACCATGTTCACAGAGGAAGAGTCCTTTGCATTGCCGTC
GCTGAACTCGGCACAGTGCCTATGCTCTTACGAGGACACCAACGAACAAC
CAAGGTATGCAGTATGCAGACCGACTGCTGTTCTTGTAGATAGTCTAGAT
ACATACGCCGCTTCCTCACGGCAGCGTGACAGCTCTGGCTAGCCATGCGG
TGTGCCTCGTGTTTGAGAATGAGCTGCGTAGAAGTAAAAACTTGAACTGT
GGCCATTGGTCTTGGGTAGTTTTAACGGCCATCTTACAGACAGCAGTATC
ACGCATCACGCATCACGCAGTCTGCTGTGGTATTGCGATTGATCGAGCCG
TTGGCTGTTGGGGCCCCGTGGAGGTGGAGATCTCCGGAAAAATCAACGAT
GCATACAAGTTTCGCTGCCTGCGCAACGGCACCGGTGCATACCTACAGCA
GTAGACTTAGACTACGCCATTCACCTTGCTTTGTAGACGCACTCTCTTGT
TCTGCTCGCTCTTTCTTCAATAAAATTCGTTCGTTCGTGTTTGATGTATC
ATGTTTCGTCGAATTGATGTCTGCAGCCTCAAGGTGCTGTTGCGACAGAA
GGAGTGCAACCCACTTGTACAAAACCGCTGCATGTGTTCAACATGCGACT
ACCAGTAGTTTGCTCCACAGATACCTTGTATCTCCTTCTCATGGGTGTAA
GTATGCGCAAAGCTGACTGCACTGCTGTGCTTTACCGATCGACTTGTACG
CTCGTCACATGCCAATACTCAAAAGGCTGTTGGTTGTCAACGAGACGGGG
CTGCTAAAGCTCCGGGCAGGCCTCGGCCCGGCCGGAAACCGCTGTGGCCT
GGGACAGCTGCCGGCAGAATCGCTCCCGGAAGGTGCCAAGGTCGTCGCTT
GTACCGTCGTCCGCACGCGTCGGGGAGACAGCAGTGGCGGCGGCAGCGGC
GGCGGCCGGACCCCCGGTATGGTGTGCGCCGCAATGCTTTTGCCCCCGCT
CACGGCATCCGCAGCGGCGGTGGTGGGTAACCACGGGGGTAGCGGTGGGA
CTAAGCAGGGTGACGCCGCCGGAGGGCCTGCCGTGAGAGCGGCGGCGGCG
GCGGCAGCAGCGGGCGGCAGCGGCTTTCTCAACGTGTACCCTCTGGACGG
CGAGAGAGGATCGGAGGTGGAACGAGCTCTGCGCCGAGAGCCGCAACAGC
TGGTGTTGCCCTACATGCCGGCAGGGATGGCGCACACAACAGTGTGGCGG
AATGTTGCCGCGCTCCCGAACTTCGTCGGAGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGCGGGGGAAGGAGCAGGGGCATCGTCATCGTCC
TCACCAACCAACAACAGCAACAACAGTCGGGTTAGAGTCGAAAGAGGAGA
CGCCGTGCTCGTGTGGGACCAAAGCGGGATCGTGCATGGGTATACGCGTT
GGGAGGGCTGCGGCGACCGCCGAACCGCCGCCGGCAGCATCACCAGTAGA
GACGTAGGTGGAGGAGGTGCGGGTAGCGGAGGCGGCGCCACGAGCCACGT
CTCCATTCTCACTGCCGAGTCCCGGGAGGGCCTCGAGACGCTGGTGCCAG
AGCTCAGGGGCATCGACAGCCCGGTCTCGTGCCTCGCCTGCGACGCCGTG
GAGGAAGGGGACGGCTGGGCGAGGAGGCGGAGAAGGGTACTGGCCGGCTG
CATGGAGAGCGCCCGCTGCGTCTCGCTCCACGATGCAGCCAGCGGGCGCA
GGGAAACGGCGGTTGCTTCGGTCCCCGGCCCGGTGGGCGCCGTAGCGCTG
AACGCCCGCCCCCGGTTCATGCCGTACGACCGGCACGTCGACGACAGGTG
GGGCGGCAACGTCGCCGGCTTCGCTTGCACCGAGCTCGACATGTTGGCGT
GGCTCGTGGAAGGTGGCAACGCCGCTGGCGGCGGCGGCGGCGGCGGCGGC
GGGAGGTGGTACACCGGCTCCCTCCCGTTGGGAGACGCCGGCGGCGGCAG
CGATCAGGTGACGTGCATAGAGTGCGCTGATTTCTTCCGCGACGGCTCGA
CAGCCGTGGCCATCGGCACGAATCTCGGCAAGGTTATCGTCTGCAGTGCT
GAGCCCAACGGGGGCGACGCAGGGGGGCTAGCCGGGGGCCTGGAGGAGGT
TGGCGGGGTGGACACCGGCAGCAGTGGCGGTGGCGAAGGGCTCGTGTTCG
GCTTGGAGGTCGACGGTGACGAAAGCAGCGAAGAGGACGAGGCAGGTTGT
TCGTCGAACCCGGTTCAGCCGCCCTCTCGACGCGGGGAGAGCGTTTCGCC
GCGGCCTCCCGGGTTAGTGTCGTCAGCGGCAGATCGACAATTCCACTCGC
GTCGCGTCGCGGACAGACAGGGGGGCAGCGGTAGCAGGGAGAAGCAGCAG
CAACAACGGCCCCTGTTGACTGCAAGATGGCAGCGGGATTTGCCTCACGG
GGTCCTTAGAATCGCGTTCGGCGACTTCAACCACGACGGCGTGAAGGAGT
TGGTCGTTGCGACGCAGTACGGGGTCCACGTGTTTCGACCGGACTACAGG
GCGGAGGCGAGCCGGTTCGCGAAGACGATGCACGCGCTGAAAATGCTCCA
GCCGAAGGAAGACGACGGGGGGGCCGACTTCATGAGCAGCGCGAGCGATA
ATGATGGTGGTCGAGACGAAGGTTCCCGACCACGCGGCGTGGGCTCATCA
GGGGTGGAGGCTCATCATGGCGTTGGTGCCACCTTGGATGCTGCAGAATG
AAGGGCTACCGAAGAGTCCAACAAACGTCGTTGGTTTTCTTTGCCAGTGT
TTTTCGTCGTCTACCTTGGTATGTATGGCACGTGTATTTGTTTTGTGGCA
AGCAAGCGCTGATCGGAAACCAGAGAAGCTGAGAGGCATGTGCGCGGGCG
CATTTTTGGGTCGGGGCGACGCATGGTGCCATGCATGCATGTGCATCAAG
AGAGCTCGCGTTGCAGCAGGGCGCAAGAGCGATAGGGGATGGAAAAGGAA
AGATGTGTAAGACGGTCATGATGTATCTGTTTTATCATGTCTCATCCAAG
GATGGGAATCACACGAAGAAACCAACGAATCACAAGAAAATAGGAGAATG
GACGAGAGCGGACGGCACAAGTCGTGGGTTCGTTGCCTACGAGCGCGGTC
GGTCGCCCCGGTGGTGAAGTAGGTTGGAGTTTGACTCTGCCTTGGAGTGA
AAAAACTTTGAAATATTTGCGGTGGAACACGATTAATTCGTGCGTGTACT
TGTACAACGTCGGCCCCATGGTCGACGAGGGTAAGGGGAAGCTGCACCAT
CCTCGCGACAAAAGCTTGAGGCAAGCACCGCGGGAGGGATTGTGGGACAT
GAGAACAAAAAAAAAAAAAATGAAAAGCTTCCG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1324:109..3491+ >mRNA_E-fasciculatus_F_contig1324.2443.1 ID=mRNA_E-fasciculatus_F_contig1324.2443.1|Name=mRNA_E-fasciculatus_F_contig1324.2443.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3000bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1324:109..3491+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGTTGCCGCGCTCCCGAACTTCGTCGGAGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGCGGGGGAAGGAGCAGGGGCATCGTCATCGTCCT CACCAACCAACAACAGCAACAACAGTCGGGTTAGAGTCGAAAGAGGAGAC GCCGTGCTCGTGTGGGACCAAAGCGGGATCGTGCATGGGTATACGCGTTG GGAGGGCTGCGGCGACCGCCGAACCGCCGCCGGCAGCATCACCAGTAGAG ACGTAGGTGGAGGAGGTGCGGGTAGCGGAGGCGGCGCCACGAGCCACGTC TCCATTCTCACTGCCGAGTCCCGGGAGGGCCTCGAGACGCTGGTGCCAGA GCTCAGGGGCATCGACAGCCCGGTCTCGTGCCTCGCCTGCGACGCCGTGG AGGAAGGGGACGGCTGGGCGAGGAGGCGGAGAAGGGTACTGGCCGGCTGC ATGGAGAGCGCCCGCTGCGTCTCGCTCCACGATGCAGCCAGCGGGCGCAG GGAAACGGCGGTTGCTTCGGTCCCCGGCCCGGTGGGCGCCGTAGCGCTGA ACGCCCGCCCCCGGTTCATGCCGTACGACCGGCACGTCGACGACAGGTGG GGCGGCAACGTCGCCGGCTTCGCTTGCACCGAGCTCGACATGTTGGCGTG GCTCGTGGAAGGTGGCAACGCCGCTGGCGGCGGCGGCGGCGGCGGCGGCG GGAGGTGGTACACCGGCTCCCTCCCGTTGGGAGACGCCGGCGGCGGCAGC GATCAGGTGACGTGCATAGAGTGCGCTGATTTCTTCCGCGACGGCTCGAC AGCCGTGGCCATCGGCACGAATCTCGGCAAGGTTATCGTCTGCAGTGCTG AGCCCAACGGGGGCGACGCAGGGGGGCTAGCCGGGGGCCTGGAGGAGGTT GGCGGGGTGGACACCGGCAGCAGTGGCGGTGGCGAAGGGCTCGTGTTCGG CTTGGAGGTCGACGGTGACGAAAGCAGCGAAGAGGACGAGGCAGGTTGTT CGTCGAACCCGGTTCAGCCGCCCTCTCGACGCGGGGAGAGCGTTTCGCCG CGGCCTCCCGGGTTAGTGTCGTCAGCGGCAGATCGACAATTCCACTCGCG TCGCGTCGCGGACAGACAGGGGGGCAGCGGTAGCAGGGAGAAGCAGCAGC AACAACGGCCCCTGTTGACTGCAAGATGGCAGCGGGATTTGCCTCACGGG GTCCTTAGAATCGCGTTCGGCGACTTCAACCACGACGGCGTGAAGGAGTT GGTCGTTGCGACGCAGTACGGGGTCCACGTGTTTCGACCGGACTACAGGG CGGAGGCGAGCCGGTTCGCGAAGACGATGCACGCGCTGAAAATGCTCCAG CCGAAGGAAGACGACGGGGGGGCCGACTTCATGAGCAGCGCGAGCGATAA TGATGGTGGTCGAGACGAAGGTTCCCGACCACGCGGCGTGGGCTCATCAG GGGTGGAGGCTCATCATGGCGTTGGTGCCACCTTGGATGCTGCAGAATGA ATGTTGCCGCGCTCCCGAACTTCGTCGGAGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGCGGGGGAAGGAGCAGGGGCATCGTCATCGTCCT CACCAACCAACAACAGCAACAACAGTCGGGTTAGAGTCGAAAGAGGAGAC GCCGTGCTCGTGTGGGACCAAAGCGGGATCGTGCATGGGTATACGCGTTG GGAGGGCTGCGGCGACCGCCGAACCGCCGCCGGCAGCATCACCAGTAGAG ACGTAGGTGGAGGAGGTGCGGGTAGCGGAGGCGGCGCCACGAGCCACGTC TCCATTCTCACTGCCGAGTCCCGGGAGGGCCTCGAGACGCTGGTGCCAGA GCTCAGGGGCATCGACAGCCCGGTCTCGTGCCTCGCCTGCGACGCCGTGG AGGAAGGGGACGGCTGGGCGAGGAGGCGGAGAAGGGTACTGGCCGGCTGC ATGGAGAGCGCCCGCTGCGTCTCGCTCCACGATGCAGCCAGCGGGCGCAG GGAAACGGCGGTTGCTTCGGTCCCCGGCCCGGTGGGCGCCGTAGCGCTGA ACGCCCGCCCCCGGTTCATGCCGTACGACCGGCACGTCGACGACAGGTGG GGCGGCAACGTCGCCGGCTTCGCTTGCACCGAGCTCGACATGTTGGCGTG GCTCGTGGAAGGTGGCAACGCCGCTGGCGGCGGCGGCGGCGGCGGCGGCG GGAGGTGGTACACCGGCTCCCTCCCGTTGGGAGACGCCGGCGGCGGCAGC GATCAGGTGACGTGCATAGAGTGCGCTGATTTCTTCCGCGACGGCTCGAC AGCCGTGGCCATCGGCACGAATCTCGGCAAGGTTATCGTCTGCAGTGCTG AGCCCAACGGGGGCGACGCAGGGGGGCTAGCCGGGGGCCTGGAGGAGGTT GGCGGGGTGGACACCGGCAGCAGTGGCGGTGGCGAAGGGCTCGTGTTCGG CTTGGAGGTCGACGGTGACGAAAGCAGCGAAGAGGACGAGGCAGGTTGTT CGTCGAACCCGGTTCAGCCGCCCTCTCGACGCGGGGAGAGCGTTTCGCCG CGGCCTCCCGGGTTAGTGTCGTCAGCGGCAGATCGACAATTCCACTCGCG TCGCGTCGCGGACAGACAGGGGGGCAGCGGTAGCAGGGAGAAGCAGCAGC AACAACGGCCCCTGTTGACTGCAAGATGGCAGCGGGATTTGCCTCACGGG GTCCTTAGAATCGCGTTCGGCGACTTCAACCACGACGGCGTGAAGGAGTT GGTCGTTGCGACGCAGTACGGGGTCCACGTGTTTCGACCGGACTACAGGG CGGAGGCGAGCCGGTTCGCGAAGACGATGCACGCGCTGAAAATGCTCCAG CCGAAGGAAGACGACGGGGGGGCCGACTTCATGAGCAGCGCGAGCGATAA TGATGGTGGTCGAGACGAAGGTTCCCGACCACGCGGCGTGGGCTCATCAG GGGTGGAGGCTCATCATGGCGTTGGTGCCACCTTGGATGCTGCAGAATGA back to top
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