mRNA_E-fasciculatus_F_contig13230.2440.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13230.2440.1
Unique NamemRNA_E-fasciculatus_F_contig13230.2440.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: D8LEC7_ECTSI (Delta-aminolevulinic acid dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEC7_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 9.230e-108
Identity = 165/178 (92.70%), Postives = 171/178 (96.07%), Query Frame = 1 
Query:    1 MSPTTSVLTVLGSLISASVSDGFVVPMMAPPAAPSAFAAKNNVGGTPTMVATPDRVATSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            MSPTTSVLTVLGSLIS SVSD FVVPMMAP  APSAFAAKN VGGTPTMVATPDRV+TSASSSAFEPT+GPNAPLRVNN G+AWVPQR RPRRNRKSEA+RSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVR+FVVFPKVPD+LKTNYADECYN
Sbjct:    1 MSPTTSVLTVLGSLISVSVSDAFVVPMMAPRGAPSAFAAKNKVGGTPTMVATPDRVSTSASSSAFEPTKGPNAPLRVNNKGKAWVPQRARPRRNRKSEAVRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRSFVVFPKVPDELKTNYADECYN 178
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: Q9ARD2_9PHAE (Delta-aminolevulinic acid dehydratase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9ARD2_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 9.850e-70
Identity = 122/179 (68.16%), Postives = 139/179 (77.65%), Query Frame = 1 
Query:   10 TTSVLTVLGSLISASVSDGFVVPMMAPPAAPSAFAAKNNVGGTPTMVATPD----RVATSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            T ++L VLG+L+S SVSD F V   A     S+++ K    GT ++  T      +  TS  + A++P  GPNAPLR NNN  AWV QRPRPRRNRKSEAMRSM+RE VVRPANFIYPLFIH+EDFEVEIKPMPGCLRHSL HMLKEVEEAW+FGVRTFVVFPKVPDQLKTNYADEC+N
Sbjct:    3 TAAMLAVLGALLSVSVSDAFAVLPTA-----SSWSTKGMGTGTGSLRHTASARGAKTTTSMGADAYDPFSGPNAPLRRNNNNDAWVSQRPRPRRNRKSEAMRSMLREAVVRPANFIYPLFIHDEDFEVEIKPMPGCLRHSLSHMLKEVEEAWKFGVRTFVVFPKVPDQLKTNYADECHN 176
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: Q9ARD9_FUCVE (Delta-aminolevulinic acid dehydratase n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=Q9ARD9_FUCVE)

HSP 1 Score: 213 bits (543), Expect = 9.200e-65
Identity = 116/184 (63.04%), Postives = 138/184 (75.00%), Query Frame = 1 
Query:   34 GSLISASVSDGFVVPMMAPPAA---PSAFAAKNNVGGTPT---------MVATPDRVA-----TSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            G LI  +V + FV P   PP A   PS+F   + VG TPT         MVA P+ ++     T   ++A+ P +GPNAPLR NNNG+ W PQ+ RPRRNRKSEAMRSMVREN+VRPANFIYPLFIH++DFEVEI+ MPGCLRHSLPHML+EVEEAW+FGVRTFV+FP+VPD LKTNY +ECYN
Sbjct:   12 GMLILVTVCEAFVAPR--PPLAGLAPSSFT--SGVGITPTCAPAGVVTSMVAAPNSISAGTTETRTEAAAYNPLDGPNAPLRSNNNGEVWRPQKVRPRRNRKSEAMRSMVRENIVRPANFIYPLFIHDKDFEVEIQSMPGCLRHSLPHMLEEVEEAWKFGVRTFVLFPQVPDHLKTNYGEECYN 191
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A836CM03_9STRA (Delta-aminolevulinic acid dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM03_9STRA)

HSP 1 Score: 192 bits (488), Expect = 7.380e-57
Identity = 104/176 (59.09%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:   16 SVLTVLGSLISASVSDGFVVPMMAPPAAPSAFAAKNNVGGTPTMVATPDRVATSASSS---AFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            SVL V+G L+SAS    F+ PM                     MVA P+R A +  +S   A+ P EG  APL VNN G  WVPQR RPRRNRKS+AMR MVRE +V PANFIYPLFIHEE ++ EI  MPGC RHSL HMLKE E+AW+FGVRTFV+FPKV D LK+NYADECYN
Sbjct:    6 SVLPVVGVLLSASAGSAFMQPMR--------------------MVAAPERAAPAVRASELPAYNPLEGAGAPLTVNNGGNVWVPQRARPRRNRKSDAMRRMVRETIVTPANFIYPLFIHEESYQQEIPSMPGCQRHSLEHMLKECEDAWRFGVRTFVLFPKVADNLKSNYADECYN 161
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A7S1UCC0_9STRA (Delta-aminolevulinic acid dehydratase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCC0_9STRA)

HSP 1 Score: 185 bits (470), Expect = 9.130e-54
Identity = 93/133 (69.92%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:  136 TPTMVATPDRVATSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            TP MVA+   V   AS  +F P  GP   L  NNNG  WVPQR RPRRNRKSEA+RSMVREN+V P N IYPLFIHEEDFE EI+ MPGCLRHSLPHML+EV++AWQ+GVRTFV+FPKVPD+LKTN  +E YN
Sbjct:   71 TPRMVASERPV--DASGESFSPLSGPKPALITNNNGGVWVPQRARPRRNRKSEAVRSMVRENLVTPRNLIYPLFIHEEDFETEIESMPGCLRHSLPHMLEEVKDAWQYGVRTFVLFPKVPDELKTNRGEESYN 201
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A7S3XWB7_HETAK (Delta-aminolevulinic acid dehydratase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWB7_HETAK)

HSP 1 Score: 179 bits (453), Expect = 5.870e-52
Identity = 83/124 (66.94%), Postives = 100/124 (80.65%), Query Frame = 1 
Query:  163 RVATSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            R + S  S  F+P +GPNA L+ NNNG  WVPQR RPRRNRKS A+R MVRE +V P NFIYPLFIH+ED+E +I  MPGC RHSLPHM++E +EAW +GVR+F++FPKVPD+LKTN ADECYN
Sbjct:   24 RASRSVLSMNFDPVDGPNAGLKRNNNGDVWVPQRIRPRRNRKSAAVRDMVRECIVTPRNFIYPLFIHDEDYEQDIPSMPGCQRHSLPHMIEECKEAWSYGVRSFILFPKVPDELKTNMADECYN 147
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A7S2XYQ0_9STRA (Delta-aminolevulinic acid dehydratase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYQ0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.580e-50
Identity = 84/121 (69.42%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:  172 TSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            TS+ ++ F+PT GP+A L+ NN G  W  QRPRPRRNRKSEAMRSMVRE +V P+NFIYPLFIHEEDF  EI  MPGC RHSLP M+KE E AW+FGVR+FV+FPKV D+LKTNY +E YN
Sbjct:   50 TSSDATDFDPTSGPSAALKRNNLGNVWNEQRPRPRRNRKSEAMRSMVRETIVTPSNFIYPLFIHEEDFNQEIASMPGCERHSLPSMIKEAEAAWKFGVRSFVLFPKVDDKLKTNYGEESYN 170
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A7S2G7P7_9STRA (Delta-aminolevulinic acid dehydratase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7P7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 2.910e-48
Identity = 78/116 (67.24%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:  187 SAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            S ++PTEG   P+  NN  + W+PQR RPRRNRKS A+R+MVREN V P +FIYPLFIHEE +E EI  MPGCLRHSL HML E+ EAW++GVR FV+FPKVPD LK+N ADECYN
Sbjct:   56 SVYDPTEGSEPPMTYNNQEKLWLPQRSRPRRNRKSAAIRAMVRENFVAPCHFIYPLFIHEESYETEIPSMPGCLRHSLDHMLVEIAEAWEYGVRAFVIFPKVPDDLKSNEADECYN 171
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A7S1ZNX7_TRICV (Porphobilinogen synthase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZNX7_TRICV)

HSP 1 Score: 162 bits (411), Expect = 2.840e-46
Identity = 81/120 (67.50%), Postives = 92/120 (76.67%), Query Frame = 1 
Query:  175 SASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            S S  AF+PT G +  L+ NN  + WV QR RPRRNRKS A+R MVREN+V PANFIYPLFIHEEDF  EI  MPGC RHSLP+MLKEV EA+  GV+TFV+FPKVPD+LKTN   E YN
Sbjct:   76 SLSYDAFDPTSGDSPALKRNNADEVWVSQRARPRRNRKSAAVRGMVRENIVTPANFIYPLFIHEEDFNTEIPSMPGCERHSLPNMLKEVGEAYDLGVKTFVLFPKVPDELKTNLGVEAYN 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Match: A0A7S4INP5_9STRA (Porphobilinogen synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4INP5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.020e-45
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:  193 FEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAMRSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEAWQFGVRTFVVFPKVPDQLKTNYADECYN 534
            F+PT G N  L  NNN + WVPQR RPRRNRKS AMR MVREN+V P NFIYPLFIHEEDF   I  MPGC RH+L  MLKEV E+++ GV+TFV+FPKVPD+LKTN   E YN
Sbjct:   57 FDPTSGDNPALVRNNNNEVWVPQRARPRRNRKSAAMRGMVRENIVTPNNFIYPLFIHEEDFNTPIPSMPGCERHTLSSMLKEVGESYELGVKTFVLFPKVPDELKTNLGVEAYN 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13230.2440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC7_ECTSI9.230e-10892.70Delta-aminolevulinic acid dehydratase n=2 Tax=Ecto... [more]
Q9ARD2_9PHAE9.850e-7068.16Delta-aminolevulinic acid dehydratase n=1 Tax=Lami... [more]
Q9ARD9_FUCVE9.200e-6563.04Delta-aminolevulinic acid dehydratase n=1 Tax=Fucu... [more]
A0A836CM03_9STRA7.380e-5759.09Delta-aminolevulinic acid dehydratase n=1 Tax=Trib... [more]
A0A7S1UCC0_9STRA9.130e-5469.92Delta-aminolevulinic acid dehydratase n=1 Tax=Phae... [more]
A0A7S3XWB7_HETAK5.870e-5266.94Delta-aminolevulinic acid dehydratase (Fragment) n... [more]
A0A7S2XYQ0_9STRA4.580e-5069.42Delta-aminolevulinic acid dehydratase n=1 Tax=Fibr... [more]
A0A7S2G7P7_9STRA2.910e-4867.24Delta-aminolevulinic acid dehydratase n=1 Tax=Dict... [more]
A0A7S1ZNX7_TRICV2.840e-4667.50Porphobilinogen synthase (Fragment) n=1 Tax=Triere... [more]
A0A7S4INP5_9STRA2.020e-4567.54Porphobilinogen synthase n=1 Tax=Odontella aurita ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13230contigE-fasciculatus_F_contig13230:775..3709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.2
Seed ortholog evalue2.4e-87
Seed eggNOG ortholog2880.D8LEC7
Preferred nameALAD
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K09490,ko:K09499
KEGG TC1.A.33
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko03060,ko04141,ko04918,ko05020,map00860,map01100,map01110,map01120,map03060,map04141,map04918,map05020
KEGG ModuleM00121
GOsGO:0001101,GO:0001666,GO:0001775,GO:0002237,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0007584,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009314,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009719,GO:0009725,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010043,GO:0010044,GO:0010212,GO:0010243,GO:0010266,GO:0010269,GO:0010288,GO:0010605,GO:0012505,GO:0014070,GO:0014823,GO:0016043,GO:0016192,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030141,GO:0030162,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031667,GO:0031960,GO:0031974,GO:0031982,GO:0031983,GO:0032025,GO:0032268,GO:0032269,GO:0032496,GO:0032940,GO:0033013,GO:0033014,GO:0033197,GO:0033273,GO:0033993,GO:0034097,GO:0034641,GO:0034774,GO:0036230,GO:0036293,GO:0042119,GO:0042168,GO:0042176,GO:0042177,GO:0042221,GO:0042440,GO:0042493,GO:0042802,GO:0043167,GO:0043169,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045471,GO:0045861,GO:0046148,GO:0046483,GO:0046677,GO:0046685,GO:0046686,GO:0046689,GO:0046872,GO:0046903,GO:0046914,GO:0048519,GO:0048523,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051384,GO:0051597,GO:0051704,GO:0051707,GO:0051716,GO:0060205,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0070541,GO:0070542,GO:0070670,GO:0070887,GO:0071241,GO:0071248,GO:0071284,GO:0071310,GO:0071345,GO:0071353,GO:0071704,GO:0071840,GO:0080090,GO:0097305,GO:0097708,GO:0099503,GO:0101002,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1904813,GO:1904854
EggNOG free text desc.porphobilinogen synthase activity
EggNOG OGsCOG0113@1,KOG2794@2759
EC4.2.1.24
COG Functional cat.H
BiGG ReactioniRC1080.CRv4_Au5_s2_g8620_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionporphobilinogen synthase, putative chloroplast precursor
Ec32 orthologEc-00_001750.1
Exons5
Model size534
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13230.2440.1prot_E-fasciculatus_F_contig13230.2440.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13230 775..3709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927826.9766107-CDS-E-fasciculatus_F_contig13230:774..8291622927826.9766107-CDS-E-fasciculatus_F_contig13230:774..829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 775..829 +
1695995711.6192307-CDS-E-fasciculatus_F_contig13230:774..8291695995711.6192307-CDS-E-fasciculatus_F_contig13230:774..829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 775..829 +
1622927826.995066-CDS-E-fasciculatus_F_contig13230:1915..21061622927826.995066-CDS-E-fasciculatus_F_contig13230:1915..2106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 1916..2106 +
1695995711.6344907-CDS-E-fasciculatus_F_contig13230:1915..21061695995711.6344907-CDS-E-fasciculatus_F_contig13230:1915..2106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 1916..2106 +
1622927827.0086887-CDS-E-fasciculatus_F_contig13230:2599..27221622927827.0086887-CDS-E-fasciculatus_F_contig13230:2599..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 2600..2722 +
1695995711.6434171-CDS-E-fasciculatus_F_contig13230:2599..27221695995711.6434171-CDS-E-fasciculatus_F_contig13230:2599..2722Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 2600..2722 +
1622927827.0234203-CDS-E-fasciculatus_F_contig13230:3232..33521622927827.0234203-CDS-E-fasciculatus_F_contig13230:3232..3352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 3233..3352 +
1695995711.6533382-CDS-E-fasciculatus_F_contig13230:3232..33521695995711.6533382-CDS-E-fasciculatus_F_contig13230:3232..3352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 3233..3352 +
1622927827.0397458-CDS-E-fasciculatus_F_contig13230:3664..37091622927827.0397458-CDS-E-fasciculatus_F_contig13230:3664..3709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 3665..3709 +
1695995711.663352-CDS-E-fasciculatus_F_contig13230:3664..37091695995711.663352-CDS-E-fasciculatus_F_contig13230:3664..3709Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13230 3665..3709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13230.2440.1

>prot_E-fasciculatus_F_contig13230.2440.1 ID=prot_E-fasciculatus_F_contig13230.2440.1|Name=mRNA_E-fasciculatus_F_contig13230.2440.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=178bp
MSPTTSVLTVLGSLISASVSDGFVVPMMAPPAAPSAFAAKNNVGGTPTMV
ATPDRVATSASSSAFEPTEGPNAPLRVNNNGQAWVPQRPRPRRNRKSEAM
RSMVRENVVRPANFIYPLFIHEEDFEVEIKPMPGCLRHSLPHMLKEVEEA
WQFGVRTFVVFPKVPDQLKTNYADECYN
back to top

mRNA from alignment at E-fasciculatus_F_contig13230:775..3709+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13230.2440.1 ID=mRNA_E-fasciculatus_F_contig13230.2440.1|Name=mRNA_E-fasciculatus_F_contig13230.2440.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2935bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13230:775..3709+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGTCCCACGACGTCGGTGCTCACTGTTCTCGGGTCGCTGATTTCAGC
CTCAGGTGAGCCAGCTTTCTGTTGAGATAGATGCATGCGGGTGTCATGTT
GTGGTTGTGTTTTTTTCCGTTCCCGCCTCTCGAGGCTGCTGTCTCTCTTT
ACTCTCACGGCAGAAGGCCATCACGCCTGTCTGTGGCCCCAGGAATGAAG
AGTCCGACTTCGTCCACGCCGGTATGTTATGCCATCTTCCCACGGATCAT
CCGAGTTTCCCACTAGACCGTGATCGCAAAATGTGCAGACACGGGAGAGA
ATATGCGGCTCAAATCATCATGAAAATCTCCTGCTTCATGCAAGTGTATG
TGCCGCATGCGAGCAAGCTTGTTAGCCAGAGCGTTTACTACATTCCTGGT
ATAGACTAATGCTGCCTACTGCTGTAGGTGTTTCCGCGTGGCAACAAACA
CCAACCGTAGGTCGTGATGTAGGGCGTAGAACTCGCCGATGCCTAAAGAA
AAGCGAGACTTGCTGCTGTGTTGCTTGCTGTGTTCCAATCCGCCGACACC
CCTGCAACAGGCCTAAGGCTCGTGTGTATCTTGACGTTGTTACAACCATC
ACGTATATGTAGTTTGTACTGCATGGGTTAGTTGGATGGTACCTGGCCAC
CACAGCAGCATGTAGTCTTTATAGTGCCTTTTTGCCAGGATTGCAGCAAT
TGTTTCTTCTCTCGGCACCACAAGCCAGCATATGTTTCACTTGGGAGGTA
CATGTAGTAGACCGGTAGGTTTTTTATACTCCCTGGGGCACCTCAAGCCA
AAATCATTTGAATGTTATTTTCAGGTACCAGGTCGTGTCCCTTACTTGCC
TACATTTTCGCCGGCGATGTCGCCCACGACTTCATTACTCGGCTCGGGTG
TACGCGCACCGCTGTTGCGTTGGACGGCTTACACACATAGCGTTTTTTTA
GTCTTTCACTCCTTCCCAGCCCGCCCAGCAAACCGCCCGTGCCATAGCTG
AATGAATCCTGCGCCAACCAAGATAGCAGTAGTTTTCTTAACTCCGGTCC
TCATGTGTCCGCTGGTGCTGCTGCTCTGCCGCTTCACGTGCTCCTGTCTT
TGCTGCCATCCGACTGCTCGCTCTTGGTCGTGTCCATCTAGTCTCCGATG
GTTTCGTGGTGCCGATGATGGCGCCCCCGGCGGCCCCGTCTGCCTTCGCC
GCCAAGAACAACGTCGGCGGAACCCCCACAATGGTGGCCACCCCCGACAG
GGTCGCCACCTCCGCATCCTCCTCGGCCTTCGAGCCCACAGAGGGACCCA
ACGCACCCCTTCGTGTCAACAACAATGGCCAGGTACGCTTGGGGCCGGCC
GGGCGGGGGGTGGGGGGATAGTTGGGGTCACCTCACCAGGGGATGGTTGA
GGTTTCGAAGGGAAGGTTGATAAGGCTGGGCGAGCACTCGCTGTCTCCTG
TTGGACGGAGTGGGGTGCACAGGACGCGATGGACGTTCGGGTTCTTAACT
CATGCACGTGTGCATACGGTTGTGTTTGTAGTTCAGCTGTGCCATGTGTG
ATATATGCAGCACAGCACTTGTGGACACGCCAACTTGAAAAACCACAAAC
AGAGCGGCTAAGTATCGAGAGTCAGTCAGGCGACCACCTGCCTTGCACAC
CGCTGTGCCCCTGTGCTTGTCTACAATTGTAGCTCCGCTCGCTCCCTGCC
CCTTCCGATTTGCGGTTGAGAGCTTTTGTTTCTCGTGACGTCATCCGTCA
ACGTAGGTTGAATCAGATTCCATATCCACTTAAGACGCTTGTGTTTGTGG
CGGATTTCCTGTGTGACGCCGGCAGGCTTGGGTGCCCCAGCGGCCGCGGC
CCCGCCGCAACCGTAAGAGCGAGGCAATGCGCTCGATGGTCCGGGAGAAC
GTGGTCCGGCCTGCCAACTTCATCTACCCGCTTTTCATCCACGAAGAGGT
GAGACAATTTTCGTTTTTTTTGCGTGAGTCGATCTCTTTTGTACGCCGTT
GTCTGCCACAGCCGCTTGCCGTGCAAGCGGAACTTGAAACCAAGTCGTCA
TCCCACCGGTGGGTGTGTCTCAACGCTCTCCGCACAATACAGCTTTTAGC
TATTGTTCATGGCAGTGGTCCCTTTGAAATGCCGCATAGTGCCAAGGGGT
TGTACCCGGCACTATCAAGAGTGCGAAACAACTGGATTATTCCGAATAGG
CCACGCGATCACAAGACGTTATATTCCCGAGCGACTGGCGTTATTTATGC
AGGGACCACTGCTGTATTGCTGTAGTGTGCTATGTAGTATCCTTGTACTT
CCATTTTCGCATTGTCAGATTATGACCGGTCGTTCTCATGTCTTTCCTGC
CCCACGGTGCAGTTGCTGCCACGCGGCTCTGTGCGTCTCACTTTCACTTG
CGCGCGCCCCCCCTCTCGAACCACATTCTGGTGACCCCCACCCCGAACTA
TGGGGCAGGACTTCGAGGTGGAGATTAAGCCTATGCCCGGATGCCTTCGG
CACAGTCTCCCGCACATGTTGAAGGAGGTGGAAGAGGCGTGGCAGTTCGG
CGTGCGCACCTTCGTGGTTTTCCCCAAGGTAAGGTTAGCGCTGGGACGAC
GGGATCGATGATGGCGTGCGCGGTATTTGTTTACTCTTCAGGCCGGCCGA
CCGTGCTCCATTATTCGACGTTGGGCTGTGGTTTGGTGGTTGATTGTGGT
TATTTATTCAATGTGCCTTTTTTGTTGTCACCTGTTGTCACCTGCTGCAA
TCTGCTGCTGCTGGTGTTGCTGCTCGTTGTTGCTTTTCGCGGCCGGTGCT
GTGGCCGGCGACGGCAAGCTTTGTTTCCATTACTTGTGTTTCGTCGAGGT
TTTACTCCTGACCCCCCTCTCTCGCTCGCGTGCTTCCCAGGTACCCGACC
AGCTCAAGACCAACTACGCGGACGAATGCTACAAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13230:775..3709+

>mRNA_E-fasciculatus_F_contig13230.2440.1 ID=mRNA_E-fasciculatus_F_contig13230.2440.1|Name=mRNA_E-fasciculatus_F_contig13230.2440.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1068bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13230:775..3709+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGTCCCACGACGTCGGTGCTCACTGTTCTCGGGTCGCTGATTTCAGC
CTCAGATGAGTCCCACGACGTCGGTGCTCACTGTTCTCGGGTCGCTGATT
TCAGCCTCAGTCTCCGATGGTTTCGTGGTGCCGATGATGGCGCCCCCGGC
GGCCCCGTCTGCCTTCGCCGCCAAGAACAACGTCGGCGGAACCCCCACAA
TGGTGGCCACCCCCGACAGGGTCGCCACCTCCGCATCCTCCTCGGCCTTC
GAGCCCACAGAGGGACCCAACGCACCCCTTCGTGTCAACAACAATGGCCA
GTCTCCGATGGTTTCGTGGTGCCGATGATGGCGCCCCCGGCGGCCCCGTC
TGCCTTCGCCGCCAAGAACAACGTCGGCGGAACCCCCACAATGGTGGCCA
CCCCCGACAGGGTCGCCACCTCCGCATCCTCCTCGGCCTTCGAGCCCACA
GAGGGACCCAACGCACCCCTTCGTGTCAACAACAATGGCCAGGCTTGGGT
GCCCCAGCGGCCGCGGCCCCGCCGCAACCGTAAGAGCGAGGCAATGCGCT
CGATGGTCCGGGAGAACGTGGTCCGGCCTGCCAACTTCATCTACCCGCTT
TTCATCCACGAAGAGGCTTGGGTGCCCCAGCGGCCGCGGCCCCGCCGCAA
CCGTAAGAGCGAGGCAATGCGCTCGATGGTCCGGGAGAACGTGGTCCGGC
CTGCCAACTTCATCTACCCGCTTTTCATCCACGAAGAGGACTTCGAGGTG
GAGATTAAGCCTATGCCCGGATGCCTTCGGCACAGTCTCCCGCACATGTT
GAAGGAGGTGGAAGAGGCGTGGCAGTTCGGCGTGCGCACCTTCGTGGTTT
TCCCCAAGGACTTCGAGGTGGAGATTAAGCCTATGCCCGGATGCCTTCGG
CACAGTCTCCCGCACATGTTGAAGGAGGTGGAAGAGGCGTGGCAGTTCGG
CGTGCGCACCTTCGTGGTTTTCCCCAAGGTACCCGACCAGCTCAAGACCA
ACTACGCGGACGAATGCTACAACGTACCCGACCAGCTCAAGACCAACTAC
GCGGACGAATGCTACAAC
back to top