mRNA_E-fasciculatus_F_contig13229.2436.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13229.2436.1
Unique NamemRNA_E-fasciculatus_F_contig13229.2436.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: D7FP83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP83_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.720e-80
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:    1 RVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLR 369
            +VVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLR
Sbjct:   66 KVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLR 188
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A835Z738_9STRA (Pre protein translocase subunit Sec66-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z738_9STRA)

HSP 1 Score: 165 bits (417), Expect = 8.910e-49
Identity = 81/123 (65.85%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:    1 RVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQLR 369
            +VV  DDF ADLGISY DF++PDE+++YYEAKE      DA  LRN LLKRAIADIPII+R+Q EGPG+ N+YQQAMIG++EW A+Q AE +I EEIE VQ EA+EIEPGW Q IW +A +LR
Sbjct:   75 KVVAGDDFIADLGISYADFELPDEIEEYYEAKEA--AGDDATALRNPLLKRAIADIPIIMRLQKEGPGMQNLYQQAMIGDREWQAYQAAEALIGEEIEQVQAEAEEIEPGWGQQIWRMASELR 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A1Z5KHC6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHC6_FISSO)

HSP 1 Score: 109 bits (273), Expect = 9.310e-27
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1 
Query:   13 EDDFFADLGISYKDFDMPDEVDDYYEAKENPDIAS-DAGK----------------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            EDDFFA+L     +  +P EVD+YYE K   + A  + G+                L  AL+KRAIADIP++  +Q E  G+  +Y Q+M   K+W ++Q+AE+++S+E+E V+ EADEIEPGWSQSIW  AMQ
Sbjct:   77 EDDFFAELDGDKFNLKLPSEVDEYYETKAKCEAAGWEPGQPIKDPKDQQATQPQRLLAQALMKRAIADIPMVQHIQKESSGMNKLYSQSMCSVKQWRSYQQAESLVSQEVEEVRAEADEIEPGWSQSIWRQAMQ 210
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A7S3L5D8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5D8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.770e-26
Identity = 58/132 (43.94%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:   16 DDFFADLGISYKDFDMPDEVDDYYEAKEN-----------PDIASDAGK-----LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            DDFFA L     +  +P EVD+YY+ KE            P    +A       +  AL+KRAIADIPI+  +Q E PG+  +Y Q+M  EK+W A+Q+AE ++S E++ V+ E+D+IEPGWSQ IW  AMQ
Sbjct:   88 DDFFASLDTEKFNLKLPSEVDEYYKIKEKCESAGWEPGSKPATPQEAANGPHRVMAQALMKRAIADIPILQHIQKESPGMNKLYSQSMCSEKQWRAYQKAEALVSAEVDEVRRESDQIEPGWSQMIWRQAMQ 219
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: K0T2G4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2G4_THAOC)

HSP 1 Score: 100 bits (248), Expect = 7.540e-23
Identity = 55/130 (42.31%), Postives = 75/130 (57.69%), Query Frame = 1 
Query:   16 DDFFADLGISYKDFDMPDEVDDYYEAKE--------------NPDIASDAGKLRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            DDFF++L     +  +P  VD+YYE K               N    +    L  AL+KR IADIPI+  +Q E  G+  +Y Q+M   K+W ++Q AE M+S E+E V+ EADEIEPGWSQ++W  AMQ
Sbjct:   77 DDFFSNLDGDKFNIKLPSAVDEYYEVKAKCESDGWEPGQPMANGQPTNHHRLLAQALMKRCIADIPIVTHIQKESQGMNKLYSQSMCSVKQWKSYQAAEAMVSAEVEEVRAEADEIEPGWSQAVWRQAMQ 206
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A448YU82_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU82_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.020e-22
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:   13 EDDFFADLGISYKDFD--MPDEVDDYYEAKENPDIAS-DAGK-------------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            EDD+F+    SY+ F+  +P EVD+YY  KE    A  + GK             +  AL+KRAI DIPI+  +Q E  G+  +Y Q+M    +W A+Q AETM+S E++ V+ EADEIEPGWSQ IW  AMQ
Sbjct:   70 EDDYFS----SYEKFNIKLPAEVDEYYSVKEKCMKAGWEPGKPPTDKNPNGPHRVMAQALMKRAIGDIPIVTFIQKESAGMNKLYSQSMCSVSQWRAYQNAETMVSTEVDEVRAEADEIEPGWSQVIWRQAMQ 198
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A7S2S0P4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0P4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.310e-22
Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 1 
Query:   22 FFADLGISYKDFDMPDEVDDYYEAKEN-PDIASDAGK---------------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            FF+DL     + ++P  VD+YYE K+   D   + GK               L  AL+KR IADIP++  +Q E  G+  +Y Q+M   K+W  +Q AE M+S E+E V+ EADEIEPGWSQ IW  AMQ
Sbjct:   81 FFSDLDGEKFNLNLPAAVDEYYEVKDKCEDNGWEPGKPPTNQQEAASGPHRVLAQALMKRCIADIPLVTHIQKESAGMNKLYSQSMCSVKQWKTYQAAEAMVSAEVEEVRAEADEIEPGWSQVIWRQAMQ 210
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A6U3U3N1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3U3N1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.620e-22
Identity = 59/142 (41.55%), Postives = 80/142 (56.34%), Query Frame = 1 
Query:    1 RVVGEDD---FFADLGISYKDFDMPDEVDDYYEAKENPDIAS-----DAGK-------------LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            R   +DD   FF++L     +  +P  VD+YYE K   + A       AG+             L  AL+KR IADIPI+  +Q E PG+  +Y Q+M   K+W ++Q AE M+S E++ V+ EADEIEPGWSQ IW  AMQ
Sbjct:   69 RKKAQDDSNNFFSELDGEKFNLKLPAAVDEYYEVKAKCEEAGWEPGQGAGQGAAAANANGPHRVLAQALMKRCIADIPIVTHIQKESPGMNKLYSQSMCSVKQWRSYQAAEAMVSAEVDEVRAEADEIEPGWSQVIWRQAMQ 210
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: B7FT11_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FT11_PHATC)

HSP 1 Score: 98.2 bits (243), Expect = 4.420e-22
Identity = 55/116 (47.41%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:   61 MPDEVDDYYEAKE--------------NPDIASDAGK-LRNALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            +P EVD+YY  KE              NP  AS A + L  AL+KRAIADIPI+  +Q E  G+  +Y Q+M    +W ++Q AE ++S E+E V+ EADEIEPGWSQ IW  AMQ
Sbjct:  131 LPGEVDEYYAVKEKCESMGWEPGQTAQNPAQASPAHRALAQALMKRAIADIPIVTHIQKESSGMNKLYSQSMCSVNQWRSYQAAEQLVSTEVEEVRAEADEIEPGWSQVIWRQAMQ 246
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Match: A0A1E7F2C2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2C2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.510e-22
Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 1 
Query:   13 EDDFFADLG-ISYKDFDMPDEVDDYYEAKE----------NP--DIASDAGKLR---NALLKRAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESVQNEADEIEPGWSQSIWPLAMQ 363
            +D++F++ G  + K   +P EVD+YY  KE          NP  D +S  G  R    AL+KRAI DIPI+  +Q E PG+  +Y Q+M    +W A+Q AE ++S E++ V++EADEIEPGWSQ IW  AMQ
Sbjct:   74 DDEYFSNYGKFNIK---LPAEVDEYYAVKEKCINAGWEAGNPPKDKSSVTGPHRVMAQALMKRAIGDIPIVTFIQKESPGMNKLYAQSMCSVSQWRAYQTAEAVVSTEVDEVRSEADEIEPGWSQVIWRQAMQ 203
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13229.2436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP83_ECTSI1.720e-8099.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z738_9STRA8.910e-4965.85Pre protein translocase subunit Sec66-domain-conta... [more]
A0A1Z5KHC6_FISSO9.310e-2744.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3L5D8_9STRA1.770e-2643.94Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
K0T2G4_THAOC7.540e-2342.31Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A448YU82_9STRA1.020e-2245.11Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2S0P4_9STRA1.310e-2243.08Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U3U3N1_9STRA2.620e-2241.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7FT11_PHATC4.420e-2247.41Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F2C2_9STRA4.510e-2244.36Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13229contigE-fasciculatus_F_contig13229:1259..3682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue1.1e-62
Seed eggNOG ortholog2880.D7FP83
EggNOG free text desc.Preprotein translocase subunit Sec66
EggNOG OGs2BH0U@1,2S501@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size369
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13229.2436.1prot_E-fasciculatus_F_contig13229.2436.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13229 1259..3682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927826.2578359-CDS-E-fasciculatus_F_contig13229:1258..13641622927826.2578359-CDS-E-fasciculatus_F_contig13229:1258..1364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13229 1259..1364 -
1695995711.3615465-CDS-E-fasciculatus_F_contig13229:1258..13641695995711.3615465-CDS-E-fasciculatus_F_contig13229:1258..1364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13229 1259..1364 -
1622927826.2757828-CDS-E-fasciculatus_F_contig13229:2122..22631622927826.2757828-CDS-E-fasciculatus_F_contig13229:2122..2263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13229 2123..2263 -
1695995711.3719938-CDS-E-fasciculatus_F_contig13229:2122..22631695995711.3719938-CDS-E-fasciculatus_F_contig13229:2122..2263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13229 2123..2263 -
1622927826.2897122-CDS-E-fasciculatus_F_contig13229:3560..36821622927826.2897122-CDS-E-fasciculatus_F_contig13229:3560..3682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13229 3561..3682 -
1695995711.380075-CDS-E-fasciculatus_F_contig13229:3560..36821695995711.380075-CDS-E-fasciculatus_F_contig13229:3560..3682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13229 3561..3682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13229.2436.1

>prot_E-fasciculatus_F_contig13229.2436.1 ID=prot_E-fasciculatus_F_contig13229.2436.1|Name=mRNA_E-fasciculatus_F_contig13229.2436.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
RVVGEDDFFADLGISYKDFDMPDEVDDYYEAKENPDIASDAGKLRNALLK
RAIADIPIILRMQNEGPGIYNMYQQAMIGEKEWHAFQEAETMISEEIESV
QNEADEIEPGWSQSIWPLAMQLR
back to top

mRNA from alignment at E-fasciculatus_F_contig13229:1259..3682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13229.2436.1 ID=mRNA_E-fasciculatus_F_contig13229.2436.1|Name=mRNA_E-fasciculatus_F_contig13229.2436.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13229:1259..3682- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTTGTCGGAGAGGACGACTTTTTCGCAGACCTGGGCATCAGCTACAA
GGACTTCGACATGCCGGACGAAGTGGATGACTACTACGAGGCCAAGGAGA
ACCCGGACATCGCTAGTGACGCGTGAGAAGAGAAGAGAAGAGAAGAGAAG
AGAAGGGAATAGAGAAGCAAACCCGCGATGTCGTCTTGTACTCCAAGAAA
TAAATTTATTTTCTAGATTTCGGAAAACGTTCACGAGGAAGGGACGAGCA
GGGGCAGTGCCACGTTAGAAAAACACCGGTTAGGCAGCTTGTCGATGGCC
AATTGCCACAGGCCGAATATCAAGCCCTAAACATTGACGACGATGGTGAC
GCAGAGGAGTTGGAGTTCAAGACTTGAATTCCAACTCCTCTACGCCACCA
TCGTCGTTAATGTGTAGGGCTTGGTATTCGGCCTGTGTCAATTGGCCATC
CACAAGCTGGACCACGCGGTGTGTTGATTGATGTGCACACAAAGCCCGTA
ACAACAATATGTGACCGACCTTCCTCCTGCCTAGCCCCGTGTATTACGTG
AAAGATATGATACGCACCGGAAGGCGGAAGGTGTGTGGTGTAGACTGACT
GGTTGGTGCCGGCATAGATGCGACGAACACACCCATGGCATAGTCGACGC
TTCGAGGTTGGTACAGAGTTGCAAGTCGTTCGTCAGTGTTGATGTCTTGT
TATTGTTTTGTGCAGGAGAAATCATCAGTGCCTGCTTCCATGGTTGTCCT
TTTGCCCTGACGCTCGCTTTGTGTTTCTCGGTGTGGAGGATGCACACCTT
CAACGCAACCACGACAGATAATATTTTTTTCGCCGGGATGTCGCACGCGT
TGCTGCCTAGTATGCGTATTTAGCGGGTTTTCTGTTCCCGTTGTGATGTG
CTCCCTCTCTGTATGCCTTCGTCTTGTTAATATTTCATATTTCATGCCAG
AAAAACTGTAGCAGGAGGCTGAAGACTATCTACATGGCTCACAGCAGTGC
CAAGGGATTTACCCGCCCTACACCGAGCGCCCGACACTATTCAGAGTATG
AGACAGACAGACAGACAGACAGGTTGAATGTTAATGTTCCATCTGCGGCA
AGAGATTTCACCAGCCTTGTATGCATGTGACGAGAACGACCACTCTTATC
TGTGCGGCCTTGAACAATGATTACGAGAATATTGTGATATATACCTCTCC
ACGCCATAGCGACGTGTCTCCAGCTCATGTTTTCTGATGGCTCTCTTGTA
TGCATGTCACGAGAACGACCGCCCTTATCTGTGTGGCCTTAAACAAGGAC
AGCTACAATATTGTGATACTGCTCCACGCCATAGCGACGTGTCTCCAGCT
CATGTTTTCTGATGTCCCTCTTCCCGTCCCCTCTCGGACCCGCTCTTTCT
TTCCCCTCCTGTTTCTCAGCGGAAAGCTGCGGAATGCGTTGCTTAAGCGA
GCGATCGCTGACATCCCCATTATCCTGCGCATGCAGAACGAGGGGCCGGG
CATCTACAACATGTACCAGCAGGCGATGATCGGGGAGAAGGAGTGGCACG
CGTTCCAAGAGTGAGTCGAAGCCCGCAATCACGTTTTTCGGAACTTGAAT
ACTCAAGTACAGAGGATTGTTCGTCAATTAAAAAAAAAAAAAAGACAAAT
ATTATTACAGTAGGTCGGAGAGAAGGAGTGGCACGCCTTCCAAGAGTGAG
TCAAACCCGTCATCGTGTTTTCCGGAACAAAAAATACGCACGTAGGTTGT
TCTTGTTGCTCTCTGGACTGCTGCTTTGAGTGGTTTCGGTTCTGAGCTGG
ATTCCAATCGCCACAGAATCGCCTCGCAGGTTAGAGGAACAGTGGTTCGC
GGCGTCTTGTCGTTTCACTTCTAACGGACTAAACTACCTGTTGTAGCTTT
CCGCATCAGATGCACCATATATGCTGGTATTGAATTGTATACCCTCTATC
GGGTGTAGCACGTGCCAGTACAAACACAGACCTTTTTGTTCGAGCAGTAC
TCCCCGAGAGTAAATTTTGGTGGTGACAACGCCTTGGTGTCATTTTTTTT
AAATCATAGCAACAATAATTGCGCACCAGCAACAATAATTGCGCACCAGC
GGTAACGACGCGCCCCTTGAATGTTACTTAATCATGTGGTGATCAACAGC
CTTGGCACGGTAGCAGCACCACCAACAACCGTCGCTTGCCAGGAAACACT
GATATCATTCGCGTCGTCGACAACATTTTTTTTTTCTTGCGCTCTTTGCT
TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTGTGGTTTGTTTTGT
TTCTGTGACTTCACTTAGGGCGGAAACGATGATCTCGGAAGAAATCGAGT
CGGTGCAGAACGAGGCGGACGAGATCGAGCCGGGCTGGAGCCAGTCCATC
TGGCCCTTGGCGATGCAACTCAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13229:1259..3682-

>mRNA_E-fasciculatus_F_contig13229.2436.1 ID=mRNA_E-fasciculatus_F_contig13229.2436.1|Name=mRNA_E-fasciculatus_F_contig13229.2436.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13229:1259..3682- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGGTTGTCGGAGAGGACGACTTTTTCGCAGACCTGGGCATCAGCTACAA
GGACTTCGACATGCCGGACGAAGTGGATGACTACTACGAGGCCAAGGAGA
ACCCGGACATCGCTAGTGACGCAGGGTTGTCGGAGAGGACGACTTTTTCG
CAGACCTGGGCATCAGCTACAAGGACTTCGACATGCCGGACGAAGTGGAT
GACTACTACGAGGCCAAGGAGAACCCGGACATCGCTAGTGACGCCGGAAA
GCTGCGGAATGCGTTGCTTAAGCGAGCGATCGCTGACATCCCCATTATCC
TGCGCATGCAGAACGAGGGGCCGGGCATCTACAACATGTACCAGCAGGCG
ATGATCGGGGAGAAGGAGTGGCACGCGTTCCAAGACGGAAAGCTGCGGAA
TGCGTTGCTTAAGCGAGCGATCGCTGACATCCCCATTATCCTGCGCATGC
AGAACGAGGGGCCGGGCATCTACAACATGTACCAGCAGGCGATGATCGGG
GAGAAGGAGTGGCACGCGTTCCAAGAGGCGGAAACGATGATCTCGGAAGA
AATCGAGTCGGTGCAGAACGAGGCGGACGAGATCGAGCCGGGCTGGAGCC
AGTCCATCTGGCCCTTGGCGATGCAACTCAGGGGCGGAAACGATGATCTC
GGAAGAAATCGAGTCGGTGCAGAACGAGGCGGACGAGATCGAGCCGGGCT
GGAGCCAGTCCATCTGGCCCTTGGCGATGCAACTCAGG
back to top