mRNA_E-fasciculatus_F_contig13228.2435.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13228.2435.1
Unique NamemRNA_E-fasciculatus_F_contig13228.2435.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13228.2435.1 vs. uniprot
Match: A0A6H5KTL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.640e-21
Identity = 63/88 (71.59%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 RGEEDTADAGEASAEKSAAGVQDDEAAEGEPNQPLPGTATTGPDETDKVVAEESEEESCDYGCAPPKAATRASAATEDSGSESPTSAE 264
            RG EDTA+ G+ASAE+ AA  QDDEA E E NQPL GT   GPDE +K VAEE EEESCDYGCAPPKAA   S A ED GSESPTSAE
Sbjct:   19 RGGEDTANTGKASAEEGAADAQDDEAVECEANQPLAGTPA-GPDEAEKAVAEELEEESCDYGCAPPKAAACVSEA-EDGGSESPTSAE 104
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BLAST of mRNA_E-fasciculatus_F_contig13228.2435.1 vs. uniprot
Match: D8LK00_ECTSI (DEK C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK00_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-17
Identity = 59/80 (73.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   46 KSAAGV-QDDEAAEGEPNQPLPGTATTGPDETDKVVAEESEEESCDYGCAPPKAATRASAATEDSGSESPTSAENSAIAA 282
            KSAA   Q  +A EGE NQPL GT   GPDE +K VAEESEEESCDYGCA PKAA R SAA EDSGSESPTSAE SAI A
Sbjct:   28 KSAASTTQRSQAVEGEANQPLAGTPA-GPDEAEKAVAEESEEESCDYGCARPKAAARVSAA-EDSGSESPTSAEKSAIEA 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13228.2435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTL5_9PHAE6.640e-2171.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK00_ECTSI1.590e-1773.75DEK C-terminal domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13228contigE-fasciculatus_F_contig13228:2688..3670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D8LK00
EggNOG OGs28NH7@1,2QV2P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927826.1684546-CDS-E-fasciculatus_F_contig13228:2687..27621622927826.1684546-CDS-E-fasciculatus_F_contig13228:2687..2762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13228 2688..2762 +
1695995711.307975-CDS-E-fasciculatus_F_contig13228:2687..27621695995711.307975-CDS-E-fasciculatus_F_contig13228:2687..2762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13228 2688..2762 +
1622927826.2159698-CDS-E-fasciculatus_F_contig13228:3461..36681622927826.2159698-CDS-E-fasciculatus_F_contig13228:3461..3668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13228 3462..3668 +
1695995711.3321452-CDS-E-fasciculatus_F_contig13228:3461..36681695995711.3321452-CDS-E-fasciculatus_F_contig13228:3461..3668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13228 3462..3668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13228.2435.1prot_E-fasciculatus_F_contig13228.2435.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13228 2688..3668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13228.2435.1

>prot_E-fasciculatus_F_contig13228.2435.1 ID=prot_E-fasciculatus_F_contig13228.2435.1|Name=mRNA_E-fasciculatus_F_contig13228.2435.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
RGEEDTADAGEASAEKSAAGVQDDEAAEGEPNQPLPGTATTGPDETDKVV
AEESEEESCDYGCAPPKAATRASAATEDSGSESPTSAENSAIAA
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mRNA from alignment at E-fasciculatus_F_contig13228:2688..3670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13228.2435.1 ID=mRNA_E-fasciculatus_F_contig13228.2435.1|Name=mRNA_E-fasciculatus_F_contig13228.2435.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=983bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13228:2688..3670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGAGAAGAGGACACTGCCGATGCTGGCGAAGCTAGTGCAGAAAAAAG
TGCAGCGGGTGTACAGGACGATGAGGTACGAATGAAAATCCCCGTTTTGT
GCGCGTTTGCTTGTTGGATACGTACGCCCGGAGTGGTGGATTTGCGGCGC
CATGGTTTTTCAAATTCGCTCTCGGAGCAGTGTGTACAGAGTAGCAGTCC
AGCGTTCACAGGCGTGGAGGTTTAACCCTGTAGGGTTGTTGTCGAGCTGC
TGGTGTACGAGTCTCACGGAATGATCTTGCTTCTGGTGCTCTCGATGGCT
TCCTAGGACAACATATCTGTGGGATCTCACCTATACATTGTACTCGTGGA
ATTTGAAAAATTCAATTTGAAAACTGAAAATTCGACTCGAACGCCGCAGC
CATCTCGAGGTGGAGACTACGCATATGTTCATGCAGTTCATATGCAAGCT
GCTCGTGTGCTCGCCATCACATCCATCTGTGAGGTTTAACGCCACGGCTG
TTATCACTAGTGGACTTGGTCGCATCGGGGTGTGTACCTTGTGGACCGAA
AGCTTTTTCGGACCGTAGTATAAATGTGTACTCAGCACAATGGTCGCAGT
TCGGCGCGCGTTCAACTACATATGTGCGTACTCTGGTGTCGACCGGAACC
GTATTGCGTGAATACCGATCCATCTCCCGTTCTTCGACACCTTGTGGTTT
CGATGTGTGTGCTTTCTTCAACGTGCGGACCCTGACGCGGTGCCCTCTTT
GTTTCTCTTTGTTTCGACGGTCAGGCGGCGGAGGGCGAGCCAAACCAACC
CCTGCCGGGGACGGCTACTACTGGGCCGGATGAGACCGACAAAGTGGTGG
CGGAGGAATCGGAGGAAGAGAGTTGCGACTACGGGTGTGCTCCGCCGAAG
GCAGCAACGCGCGCGTCGGCAGCGACAGAGGACAGCGGTAGCGAGTCTCC
GACTTCAGCAGAGAATTCTGCGATAGCAGCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13228:2688..3670+

>mRNA_E-fasciculatus_F_contig13228.2435.1 ID=mRNA_E-fasciculatus_F_contig13228.2435.1|Name=mRNA_E-fasciculatus_F_contig13228.2435.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13228:2688..3670+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAGGAGAAGAGGACACTGCCGATGCTGGCGAAGCTAGTGCAGAAAAAAG
TGCAGCGGGTGTACAGGACGATGAGAGAGGAGAAGAGGACACTGCCGATG
CTGGCGAAGCTAGTGCAGAAAAAAGTGCAGCGGGTGTACAGGACGATGAG
GCGGCGGAGGGCGAGCCAAACCAACCCCTGCCGGGGACGGCTACTACTGG
GCCGGATGAGACCGACAAAGTGGTGGCGGAGGAATCGGAGGAAGAGAGTT
GCGACTACGGGTGTGCTCCGCCGAAGGCAGCAACGCGCGCGTCGGCAGCG
ACAGAGGACAGCGGTAGCGAGTCTCCGACTTCAGCAGAGAATTCTGCGAT
AGCAGCAGCGGCGGAGGGCGAGCCAAACCAACCCCTGCCGGGGACGGCTA
CTACTGGGCCGGATGAGACCGACAAAGTGGTGGCGGAGGAATCGGAGGAA
GAGAGTTGCGACTACGGGTGTGCTCCGCCGAAGGCAGCAACGCGCGCGTC
GGCAGCGACAGAGGACAGCGGTAGCGAGTCTCCGACTTCAGCAGAGAATT
CTGCGATAGCAGCA
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