prot_E-fasciculatus_F_contig13222.2433.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig13222.2433.1
Unique Name	prot_E-fasciculatus_F_contig13222.2433.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	397

Homology

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BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.750e-21
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 0

Query:   48 ATCSNGVPGVENGMGTVCCPIECGDFCGGSDC-----GTVDATNCCSSAIFDGHEDCNVSEEAPCFIIDSSSAT-ATCSNGVTGVENEMGTVCCPIECGDFCGGDECV----VNALLCCASSITDSDVYCDEAGEAPCIIGSA 180
            A CSNG+ G+++    VCC   C + CGG DC      ++ + +CC++ I +    C+VS  APC I  +++A  + C NG TGV +    VCCP+ECGD CGG+ C     VNA  CC+S I +S   C +   APC++G+A
Sbjct:   28 AVCSNGLEGIQSTSLDVCCVEGC-EVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAA 169

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BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.800e-21
Identity = 60/137 (43.80%), Postives = 75/137 (54.74%), Query Frame = 0

Query:   48 ATCSNGVPGVENGMGTVCCPIECGDFCGGSDCGT---VDATNCCSSAIFDGHEDCNVSEEAPCFIIDSSSATATCSNGVTGVENEMGTVCCPIECGDFCGGDECVVNALL----CCASSITDSDVYCDEAGEAPCII 177
            + C NG  GV++    VCCP+ECG+ CGG  CGT   VDA+ CC+S I      C    EAPC  +  + A + CSNG  G+ENE  TVCC   C   CGG  C   A L    CC  +I  +D  C E G APC++
Sbjct:   97 SVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACV-VCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVV 232

[Close]

BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.960e-21
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 0

Query:   48 ATCSNGVPGVENGMGTVCCPIECGDFCGGSDC-----GTVDATNCCSSAIFDGHEDCNVSEEAPCFIIDSSSAT-ATCSNGVTGVENEMGTVCCPIECGDFCGGDECV----VNALLCCASSITDSDVYCDEAGEAPCIIGSA 180
            A CSNG+ G+++     CC  ECG  CGG  C      ++ + +CC++ I +    C VS  APC I  ++++  + C NG TGV++    VCCP+ CGD CGG+ C     V+A  CC++ I +S   C +   APC++G+A
Sbjct:   28 AVCSNGLEGIQSTSLDACCVEECG-LCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAA 169

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5K7R2_9PHAE	1.750e-21	40.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LG71_ECTSI	2.800e-21	43.80	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LML5_ECTSI	3.960e-21	37.76	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 268..287
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 288..307
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 313..335
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 336..396
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..242
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 243..267
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 308..312
None	No IPR available	TMHMM	TMhelix		coord: 245..267
None	No IPR available	TMHMM	TMhelix		coord: 288..307
None	No IPR available	TMHMM	TMhelix		coord: 311..333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig13222	contig	E-fasciculatus_F_contig13222:331..3508 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig13222.2433.1	mRNA_E-fasciculatus_F_contig13222.2433.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig13222 331..3508 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig13222.2433.1 ID=prot_E-fasciculatus_F_contig13222.2433.1|Name=mRNA_E-fasciculatus_F_contig13222.2433.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=397bp
TLAPNSATAGTMAPTAAQVSATASPAPTTAAANATAAPSSASTAEFVATC
SNGVPGVENGMGTVCCPIECGDFCGGSDCGTVDATNCCSSAIFDGHEDCN
VSEEAPCFIIDSSSATATCSNGVTGVENEMGTVCCPIECGDFCGGDECVV
NALLCCASSITDSDVYCDEAGEAPCIIGSASDTPSPVEILLPTPDTTPAP
GDTTAPPTNSSSGGSTDPTTTVPPTTTPAEVSSEEDGDIPQTLSIVGAAV
CGALASAVFVLTCVWLKSHCATEGKSIRRSLEVLCGKGSFWSAMFVLCGV
VIALNVFSLGWVWGAVSLYASVVLIFVVIAWFVAFKTGTPATVSLQCACC
LCPYKPSSFSVRNEQRCPHREDSVSRTACVEEPGVASPASSDSSIW*