mRNA_E-fasciculatus_F_contig13222.2433.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13222.2433.1
Unique NamemRNA_E-fasciculatus_F_contig13222.2433.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.750e-21
Identity = 58/143 (40.56%), Postives = 84/143 (58.74%), Query Frame = 1 
Query:  142 ATCSNGVPGVENGMGTVCCPIECGDFCGGSDC-----GTVDATNCCSSAIFDGHEDCNVSEEAPCFIIDSSSAT-ATCSNGVTGVENEMGTVCCPIECGDFCGGDECV----VNALLCCASSITDSDVYCDEAGEAPCIIGSA 540
            A CSNG+ G+++    VCC   C + CGG DC      ++ + +CC++ I +    C+VS  APC I  +++A  + C NG TGV +    VCCP+ECGD CGG+ C     VNA  CC+S I +S   C +   APC++G+A
Sbjct:   28 AVCSNGLEGIQSTSLDVCCVEGC-EVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAA 169
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BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.800e-21
Identity = 60/137 (43.80%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:  142 ATCSNGVPGVENGMGTVCCPIECGDFCGGSDCGT---VDATNCCSSAIFDGHEDCNVSEEAPCFIIDSSSATATCSNGVTGVENEMGTVCCPIECGDFCGGDECVVNALL----CCASSITDSDVYCDEAGEAPCII 531
            + C NG  GV++    VCCP+ECG+ CGG  CGT   VDA+ CC+S I      C    EAPC  +  + A + CSNG  G+ENE  TVCC   C   CGG  C   A L    CC  +I  +D  C E G APC++
Sbjct:   97 SVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACV-VCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVV 232
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BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.960e-21
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:  142 ATCSNGVPGVENGMGTVCCPIECGDFCGGSDC-----GTVDATNCCSSAIFDGHEDCNVSEEAPCFIIDSSSAT-ATCSNGVTGVENEMGTVCCPIECGDFCGGDECV----VNALLCCASSITDSDVYCDEAGEAPCIIGSA 540
            A CSNG+ G+++     CC  ECG  CGG  C      ++ + +CC++ I +    C VS  APC I  ++++  + C NG TGV++    VCCP+ CGD CGG+ C     V+A  CC++ I +S   C +   APC++G+A
Sbjct:   28 AVCSNGLEGIQSTSLDACCVEECG-LCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAA 169
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13222.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7R2_9PHAE1.750e-2140.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG71_ECTSI2.800e-2143.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LML5_ECTSI3.960e-2137.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13222contigE-fasciculatus_F_contig13222:331..3508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue8e-22
Seed eggNOG ortholog2880.D7FQV4
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1191
Cds size1191
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13222.2433.1prot_E-fasciculatus_F_contig13222.2433.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13222 331..3508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.9659426-CDS-E-fasciculatus_F_contig13222:330..9861622927825.9659426-CDS-E-fasciculatus_F_contig13222:330..986Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 331..986 -
1695995711.2308967-CDS-E-fasciculatus_F_contig13222:330..9861695995711.2308967-CDS-E-fasciculatus_F_contig13222:330..986Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 331..986 -
1622927825.9789588-CDS-E-fasciculatus_F_contig13222:1544..17391622927825.9789588-CDS-E-fasciculatus_F_contig13222:1544..1739Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 1545..1739 -
1695995711.2445543-CDS-E-fasciculatus_F_contig13222:1544..17391695995711.2445543-CDS-E-fasciculatus_F_contig13222:1544..1739Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 1545..1739 -
1622927825.9938123-CDS-E-fasciculatus_F_contig13222:2143..23531622927825.9938123-CDS-E-fasciculatus_F_contig13222:2143..2353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 2144..2353 -
1695995711.2539-CDS-E-fasciculatus_F_contig13222:2143..23531695995711.2539-CDS-E-fasciculatus_F_contig13222:2143..2353Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 2144..2353 -
1622927826.005395-CDS-E-fasciculatus_F_contig13222:3378..35081622927826.005395-CDS-E-fasciculatus_F_contig13222:3378..3508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 3379..3508 -
1695995711.2636023-CDS-E-fasciculatus_F_contig13222:3378..35081695995711.2636023-CDS-E-fasciculatus_F_contig13222:3378..3508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13222 3379..3508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13222.2433.1

>prot_E-fasciculatus_F_contig13222.2433.1 ID=prot_E-fasciculatus_F_contig13222.2433.1|Name=mRNA_E-fasciculatus_F_contig13222.2433.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=397bp
TLAPNSATAGTMAPTAAQVSATASPAPTTAAANATAAPSSASTAEFVATC
SNGVPGVENGMGTVCCPIECGDFCGGSDCGTVDATNCCSSAIFDGHEDCN
VSEEAPCFIIDSSSATATCSNGVTGVENEMGTVCCPIECGDFCGGDECVV
NALLCCASSITDSDVYCDEAGEAPCIIGSASDTPSPVEILLPTPDTTPAP
GDTTAPPTNSSSGGSTDPTTTVPPTTTPAEVSSEEDGDIPQTLSIVGAAV
CGALASAVFVLTCVWLKSHCATEGKSIRRSLEVLCGKGSFWSAMFVLCGV
VIALNVFSLGWVWGAVSLYASVVLIFVVIAWFVAFKTGTPATVSLQCACC
LCPYKPSSFSVRNEQRCPHREDSVSRTACVEEPGVASPASSDSSIW*
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mRNA from alignment at E-fasciculatus_F_contig13222:331..3508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13222.2433.1 ID=mRNA_E-fasciculatus_F_contig13222.2433.1|Name=mRNA_E-fasciculatus_F_contig13222.2433.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3178bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13222:331..3508- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGCTCGCGCCGAACTCGGCAACAGCCGGTACAATGGCGCCTACTGCCGC
CCAGGTGTCAGCCACGGCGAGCCCGGCGCCAACCACGGCCGCCGCAAACG
CAACAGCCGCCCCTAGTTCGGCATCCACAGGTGGGGCATGGGGTATATCG
TTTCCCTCCAAGCAACCCCGTTTCTTGCCCTATTTAGTTTCGCTGGCGAC
GCTTTCGATACTGAGTTGCGTAGACCAGGCGAGCCGCTTTTCCTCATGTC
CACGGCAAGTTTATGCGATCGGGGTTGGTTCGCGCTATTTTCCATTTGTC
GGGCGCAAGCGCTCTCTCATCTACGCGAGCCGCTTGCTTTGAGCGAAATG
CGCCCCAAGCAGGAGTTGCACCTCAGCGGTGACAGATATGGACTACGTGT
AGGATTCGGTTAACTCAAACACAAAAATAACGATACCCTCGTTTTGCTTT
GTTGAACAATGTTCGACGTAGTTCATCATCCGCTTGGGGGTGTCAATGAA
CTCTTGTCTTTGAAGCTTGCCGTTTGGGGTTAAATGAGGCAGCCAAAGAC
GTATCAATGTACATACGAATGGTACGCAGTTGTCATGCGTCTACCAGAGC
GACGATGCGCATGACGAGCTCCTCTCGAGTCCTAGAGAGAGCCTCAACGC
TTTCCCTCCTGCAGCAGCCCGAGCTTTGGTGTGTTTCTCATATGTATTCC
GTGGGTATTTGATTGTTGAAGACGATAAACACATCAAATGTGTAAACAAT
GGATAGCCAGCGGCCATGCGCGCAAACCACGCCCATCTCAGACATGAGAG
AGACTCTGCGAAGAATGAAGCCGCGAGCGCTAACGGCAGGCACTTGCAGC
TCCACGGACTTGTCTTACTAAAACTCATGGCGGATGCCGTTTCTTGTCGT
GGCGAACACTCGAGATTTGTGATCGGAACAGTCCGGGATTTCGATGAAGA
ATGAACATGAGAACCTCCCCCCCCTCGTAGCTTCGAACGGCTCGGTCGAC
CAGGCGACAGACCGTGAGCTTTGCCTGAAGACTTCGGAGCTCGAAATGCT
CATCTTGTCAAAACCCTCAGTCGCGATGACCGCCAACACCTCACGCGCAC
TATGTACTCTCCTGTTCCCGTAATCTCACTTGCCCTTCTCGCCTCTTTGG
ATGAGCAGAATTTGTCGCGACGTGCAGCAACGGTGTCCCGGGGGTCGAGA
ACGGAATGGGAACCGTATGCTGCCCGATTGAGTGCGGCGACTTTTGCGGA
GGTTCAGACTGCGGCACGGTCGATGCGACTAATTGTTGCTCGTCGGCCAT
CTTTGACGGGCACGAAGACTGCAATGTTTCCGAAGAAGCGCCGTGCTTCA
TCATCGACTCCAGCTGTAAGGCTTGGCCCCGAAGTACAACAATAGCCTGT
GCTTTCGTGCCCAAGTCATGACCCTCCGCATGAGCCTTGATCGGTGACTC
GGGTGGAGCTTTCAGTAGCTCGTACTTGTGTGGAGACAGACAGCTCGATC
GAGACGAGCTGGGCTAGAAAAATTACCAAAACATCTACTTCTACTGGCTG
TTGTCTTCCCCAAATACGGTGGTATATACTGGGCGAAGTGGAGTGAGGTC
GTCGTGGACAAGGCAAAGTGAGAAAAGGTTGTCCTTCATGCAGAATGTCG
AATCACTGTTTGCTGTCTCCAGTGGGGATGATGCAACCGCCGCATTAACT
TGTCCCACACTCCCTTTCCTGTCACGACGTCGTCACTGCCACACCCCTTT
CTTCGGAGGTCAGCTGCAGCTGCAACCGCGACGTGCAGCAACGGCGTCAC
CGGAGTGGAGAACGAGATGGGGACCGTATGCTGCCCGATTGAATGTGGCG
ACTTTTGCGGGGGCGACGAATGCGTGGTAAACGCATTGCTGTGCTGCGCG
TCGTCCATCACTGATTCAGACGTCTACTGCGATGAGGCCGGCGAAGCCCC
CTGCATCATCGGCAGTAAGTCCTCGGTCCAGAAGTGGTATGGTTCCAAGA
ACTCCCACTTTGTGCAACGATTCTGCCTATACTACCGGCCTTGCGTGTGG
CAGCTACAAACAACGTGTGAACAACGCTAAAGGTGTCAGCTGGCAGGGTG
TTTACAGAGAGAGAGAGTGCCTGGAGGTTCGCGAGGCGTACACGATTCAT
TGAAAGAGACCGAGATATGCACCTCGTCATGTGTCTCATGCTCACGTTTC
TAGCAGCGCCTGTGCGCATTGTGGTCTCGCCTTGGTCCACTGAAGATTCA
ATCCAGGGTCACACACGAGGACTCATTGTTGGGCTACAAGCGTTCGACAC
TGGGAACCGCTCGCTTAACACACCTGGCACAATTTGCCGAGCGCGATACC
ACTTCAGATCGTCTTTGATCGGCACGCCGCCTTGACCACCACTTCCTGCG
ACTAGCTACTTGCGGTCGTGGTAGCCAAACAACGGTGAAAAGCGGGAAGC
CAAACCCACCAGGCTATAAGTGACCGGATACACGACTAACTGACGTCGCT
TCACCGCGACTGATGCCTCCAGGTGCCTCTGATACTCCTTCGCCGGTAGA
AATCCTGTTGCCAACTCCTGACACCACACCAGCACCGGGAGATACAACGG
CGCCCCCAACAAACTCGTCCAGTGGCGGGAGCACGGACCCCACTACTACT
GTACCCCCTACGACCACCCCGGCGGAGGTGTCGTCCGAGGAGGACGGCGA
CATTCCGCAGACTTTGTCCATTGTTGGTGCAGCGGTTTGTGGGGCGCTCG
CGTCGGCTGTTTTCGTGCTCACGTGCGTTTGGCTGAAGTCACACTGCGCC
ACCGAAGGCAAGAGCATCCGGCGGTCGCTGGAGGTACTCTGCGGGAAGGG
CTCGTTTTGGAGCGCCATGTTCGTGCTTTGCGGGGTGGTGATAGCCCTGA
ACGTGTTCAGCCTGGGCTGGGTGTGGGGCGCCGTTAGCCTCTACGCGAGC
GTGGTGCTGATTTTTGTCGTGATCGCGTGGTTCGTGGCCTTCAAGACAGG
GACCCCGGCTACCGTGTCCCTGCAGTGCGCGTGCTGCCTCTGCCCTTACA
AGCCCTCGTCCTTCTCGGTAAGGAACGAGCAGAGGTGTCCGCATCGTGAG
GACAGCGTTTCACGGACTGCTTGCGTGGAGGAGCCAGGAGTGGCGAGCCC
TGCATCGTCGGATAGCAGTATATGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13222:331..3508-

>mRNA_E-fasciculatus_F_contig13222.2433.1 ID=mRNA_E-fasciculatus_F_contig13222.2433.1|Name=mRNA_E-fasciculatus_F_contig13222.2433.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2382bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13222:331..3508- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGCTCGCGCCGAACTCGGCAACAGCCGGTACAATGGCGCCTACTGCCGC
CCAGGTGTCAGCCACGGCGAGCCCGGCGCCAACCACGGCCGCCGCAAACG
CAACAGCCGCCCCTAGTTCGGCATCCACAGACGCTCGCGCCGAACTCGGC
AACAGCCGGTACAATGGCGCCTACTGCCGCCCAGGTGTCAGCCACGGCGA
GCCCGGCGCCAACCACGGCCGCCGCAAACGCAACAGCCGCCCCTAGTTCG
GCATCCACAGCAGAATTTGTCGCGACGTGCAGCAACGGTGTCCCGGGGGT
CGAGAACGGAATGGGAACCGTATGCTGCCCGATTGAGTGCGGCGACTTTT
GCGGAGGTTCAGACTGCGGCACGGTCGATGCGACTAATTGTTGCTCGTCG
GCCATCTTTGACGGGCACGAAGACTGCAATGTTTCCGAAGAAGCGCCGTG
CTTCATCATCGACTCCAGCTCAGAATTTGTCGCGACGTGCAGCAACGGTG
TCCCGGGGGTCGAGAACGGAATGGGAACCGTATGCTGCCCGATTGAGTGC
GGCGACTTTTGCGGAGGTTCAGACTGCGGCACGGTCGATGCGACTAATTG
TTGCTCGTCGGCCATCTTTGACGGGCACGAAGACTGCAATGTTTCCGAAG
AAGCGCCGTGCTTCATCATCGACTCCAGCTCTGCAACCGCGACGTGCAGC
AACGGCGTCACCGGAGTGGAGAACGAGATGGGGACCGTATGCTGCCCGAT
TGAATGTGGCGACTTTTGCGGGGGCGACGAATGCGTGGTAAACGCATTGC
TGTGCTGCGCGTCGTCCATCACTGATTCAGACGTCTACTGCGATGAGGCC
GGCGAAGCCCCCTGCATCATCGGCACTGCAACCGCGACGTGCAGCAACGG
CGTCACCGGAGTGGAGAACGAGATGGGGACCGTATGCTGCCCGATTGAAT
GTGGCGACTTTTGCGGGGGCGACGAATGCGTGGTAAACGCATTGCTGTGC
TGCGCGTCGTCCATCACTGATTCAGACGTCTACTGCGATGAGGCCGGCGA
AGCCCCCTGCATCATCGGCAGTGCCTCTGATACTCCTTCGCCGGTAGAAA
TCCTGTTGCCAACTCCTGACACCACACCAGCACCGGGAGATACAACGGCG
CCCCCAACAAACTCGTCCAGTGGCGGGAGCACGGACCCCACTACTACTGT
ACCCCCTACGACCACCCCGGCGGAGGTGTCGTCCGAGGAGGACGGCGACA
TTCCGCAGACTTTGTCCATTGTTGGTGCAGCGGTTTGTGGGGCGCTCGCG
TCGGCTGTTTTCGTGCTCACGTGCGTTTGGCTGAAGTCACACTGCGCCAC
CGAAGGCAAGAGCATCCGGCGGTCGCTGGAGGTACTCTGCGGGAAGGGCT
CGTTTTGGAGCGCCATGTTCGTGCTTTGCGGGGTGGTGATAGCCCTGAAC
GTGTTCAGCCTGGGCTGGGTGTGGGGCGCCGTTAGCCTCTACGCGAGCGT
GGTGCTGATTTTTGTCGTGATCGCGTGGTTCGTGGCCTTCAAGACAGGGA
CCCCGGCTACCGTGTCCCTGCAGTGCGCGTGCTGCCTCTGCCCTTACAAG
CCCTCGTCCTTCTCGGTAAGGAACGAGCAGAGGTGTCCGCATCGTGAGGA
CAGCGTTTCACGGACTGCTTGCGTGGAGGAGCCAGGAGTGGCGAGCCCTG
CATCGTCGGATAGCAGTATATGGTAGGTGCCTCTGATACTCCTTCGCCGG
TAGAAATCCTGTTGCCAACTCCTGACACCACACCAGCACCGGGAGATACA
ACGGCGCCCCCAACAAACTCGTCCAGTGGCGGGAGCACGGACCCCACTAC
TACTGTACCCCCTACGACCACCCCGGCGGAGGTGTCGTCCGAGGAGGACG
GCGACATTCCGCAGACTTTGTCCATTGTTGGTGCAGCGGTTTGTGGGGCG
CTCGCGTCGGCTGTTTTCGTGCTCACGTGCGTTTGGCTGAAGTCACACTG
CGCCACCGAAGGCAAGAGCATCCGGCGGTCGCTGGAGGTACTCTGCGGGA
AGGGCTCGTTTTGGAGCGCCATGTTCGTGCTTTGCGGGGTGGTGATAGCC
CTGAACGTGTTCAGCCTGGGCTGGGTGTGGGGCGCCGTTAGCCTCTACGC
GAGCGTGGTGCTGATTTTTGTCGTGATCGCGTGGTTCGTGGCCTTCAAGA
CAGGGACCCCGGCTACCGTGTCCCTGCAGTGCGCGTGCTGCCTCTGCCCT
TACAAGCCCTCGTCCTTCTCGGTAAGGAACGAGCAGAGGTGTCCGCATCG
TGAGGACAGCGTTTCACGGACTGCTTGCGTGGAGGAGCCAGGAGTGGCGA
GCCCTGCATCGTCGGATAGCAGTATATGGTAG
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