mRNA_E-fasciculatus_F_contig1322.2431.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1322.2431.1
Unique NamemRNA_E-fasciculatus_F_contig1322.2431.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1322.2431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1322contigE-fasciculatus_F_contig1322:9815..10443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.6983242-CDS-E-fasciculatus_F_contig1322:9814..101501622927825.6983242-CDS-E-fasciculatus_F_contig1322:9814..10150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1322 9815..10150 +
1695995711.066867-CDS-E-fasciculatus_F_contig1322:9814..101501695995711.066867-CDS-E-fasciculatus_F_contig1322:9814..10150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1322 9815..10150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.715673-UTR-E-fasciculatus_F_contig1322:10150..104431622927825.715673-UTR-E-fasciculatus_F_contig1322:10150..10443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1322 10151..10443 +
1695995711.074764-UTR-E-fasciculatus_F_contig1322:10150..104431695995711.074764-UTR-E-fasciculatus_F_contig1322:10150..10443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1322 10151..10443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1322.2431.1prot_E-fasciculatus_F_contig1322.2431.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1322 9815..10150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1322.2431.1

>prot_E-fasciculatus_F_contig1322.2431.1 ID=prot_E-fasciculatus_F_contig1322.2431.1|Name=mRNA_E-fasciculatus_F_contig1322.2431.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
RSHSAAPVRKFCEGLNHRLSVEGASLPPLEHPQYFYCCCDAASSRPRMDN
GDSTTIKQGRTNPTPRHTPIRSLFVWAVHPSLFELFNHPFTCTHFLAVPA
CWWHFAVKYID*
back to top

mRNA from alignment at E-fasciculatus_F_contig1322:9815..10443+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1322.2431.1 ID=mRNA_E-fasciculatus_F_contig1322.2431.1|Name=mRNA_E-fasciculatus_F_contig1322.2431.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=629bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1322:9815..10443+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTCTCATTCAGCGGCCCCCGTTCGAAAGTTCTGCGAGGGTCTGAATCA
CCGGCTCTCGGTAGAAGGCGCTTCTTTGCCACCATTAGAACATCCGCAGT
ATTTTTACTGCTGCTGTGATGCTGCTTCGTCGCGCCCACGTATGGACAAC
GGTGACTCGACCACTATTAAACAAGGAAGGACGAACCCAACTCCCAGACA
CACACCCATTCGTTCCTTGTTCGTGTGGGCTGTACATCCTTCTCTGTTTG
AGCTCTTCAACCATCCATTTACTTGCACGCACTTCCTTGCTGTTCCCGCT
TGCTGGTGGCACTTCGCGGTGAAATATATAGACTAGGCAAACGCGGCTAA
ATACAGTCTGCTCGATAATGTACTTACTTCCTCTTCGGACAACACCGAAA
ATCGACGGAAGTACATACTGCTGCTGTATATGCGTATGACCATTTATGCC
TTCCTCTTTTTTATGCGTCGCCTGGTGTTCGGCAAAGTCGTGGGAAGTGT
AAGATTGAACGAAGGAAATCTCGGGTTTGTGGTGCGTACGGTGGCAGGGG
TAGCAAGGCAAGGTGTGACAGCTTGCCTAGGTTTACGTAAATACGTGTGG
TACAAGGAACCCGGCAAGTTGAACCCGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1322:9815..10443+

>mRNA_E-fasciculatus_F_contig1322.2431.1 ID=mRNA_E-fasciculatus_F_contig1322.2431.1|Name=mRNA_E-fasciculatus_F_contig1322.2431.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1322:9815..10443+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTCTCATTCAGCGGCCCCCGTTCGAAAGTTCTGCGAGGGTCTGAATCA
CCGGCTCTCGGTAGAAGGCGCTTCTTTGCCACCATTAGAACATCCGCAGT
ATTTTTACTGCTGCTGTGATGCTGCTTCGTCGCGCCCACGTATGGACAAC
GGTGACTCGACCACTATTAAACAAGGAAGGACGAACCCAACTCCCAGACA
CACACCCATTCGTTCCTTGTTCGTGTGGGCTGTACATCCTTCTCTGTTTG
AGCTCTTCAACCATCCATTTACTTGCACGCACTTCCTTGCTGTTCCCGCT
TGCTGGTGGCACTTCGCGGTGAAATATATAGACTAGAGGTCTCATTCAGC
GGCCCCCGTTCGAAAGTTCTGCGAGGGTCTGAATCACCGGCTCTCGGTAG
AAGGCGCTTCTTTGCCACCATTAGAACATCCGCAGTATTTTTACTGCTGC
TGTGATGCTGCTTCGTCGCGCCCACGTATGGACAACGGTGACTCGACCAC
TATTAAACAAGGAAGGACGAACCCAACTCCCAGACACACACCCATTCGTT
CCTTGTTCGTGTGGGCTGTACATCCTTCTCTGTTTGAGCTCTTCAACCAT
CCATTTACTTGCACGCACTTCCTTGCTGTTCCCGCTTGCTGGTGGCACTT
CGCGGTGAAATATATAGACTAG
back to top