mRNA_E-fasciculatus_F_contig13219.2429.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13219.2429.1
Unique NamemRNA_E-fasciculatus_F_contig13219.2429.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 2.710e-122
Identity = 252/293 (86.01%), Postives = 257/293 (87.71%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQPLAASAAAPQAPLPPPQSSGSGGAGDPLSTADIFASGPRLRPVSKVWGRPKQGEQKQXXXXXXXXXXXXXXXXXXRGETGAAVAAA-----GYPPAXXXXXXS----RRGSGQSGSAPSQ 852
            LMQVMAWVLGEYGSLASTPRGA EVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVE DENLSHLDGIVTAALSAGAVGYSPPAEAG+D  XXXXXXXXXXXXXXSSFNLTPYARPSQP+AASAAAPQAPLPPPQSSG  GAGDPLSTADIFASGPRLRPVSKVWGRP+ GE   XXXXXXXXXXXXXXXXXX                GYPPA   X  S     RG+GQSG+APSQ
Sbjct:  483 LMQVMAWVLGEYGSLASTPRGALEVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEVDENLSHLDGIVTAALSAGAVGYSPPAEAGEDSDXXXXXXXXXXXXXXSSFNLTPYARPSQPMAASAAAPQAPLPPPQSSG--GAGDPLSTADIFASGPRLRPVSKVWGRPRPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPPATAGXGPSGPSPERGNGQSGTAPSQ 773
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A835Z519_9STRA (AP-2 complex subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z519_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.520e-37
Identity = 84/172 (48.84%), Postives = 109/172 (63.37%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPS 516
            L+Q+MAWVLGEY  LA     A +++ +LC +A   +F+DP T G++VTALMKL+AQ G V+   A L+   S S+Q+DLQQRCLEF  LAR G A M A LPVDASCED++ D++LS LDG V  A+ AGA  Y+PP +  DD                 +  L PYA+PS
Sbjct:  541 LVQIMAWVLGEYAYLAPDALDADKLAEELCAMARSRTFKDPCTRGYIVTALMKLAAQRGAVAAGTAQLVEDLSASQQTDLQQRCLEFTALARRG-AVMVAALPVDASCEDLQVDDSLSFLDGYVARAVDAGAAPYNPPLDVDDDNLAPNRGAAAAPV----TLKLAPYAKPS 707
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A7S3XR32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR32_HETAK)

HSP 1 Score: 135 bits (339), Expect = 1.060e-32
Identity = 82/143 (57.34%), Postives = 92/143 (64.34%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGD 429
            L +  AWVLGEYG LAS P  A E+   LC +A    F+DPST G  VTA+MKL AQ+G + P  A L+  YS S Q DLQQRC EF  L R  P AM   LPVDASCEDVE D  L  LDG V AAL+AGAV Y PPA + D
Sbjct:  294 LARTAAWVLGEYGYLASGPSQA-ELVDLLCALAE-RRFQDPSTRGVCVTAVMKLCAQTGTLPPAAARLVEAYSCSVQVDLQQRCREFAALLRH-PQAMVDALPVDASCEDVEVDAALPFLDGFVQAALAAGAVPYCPPAGSDD 433
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A7S1B412_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B412_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.460e-29
Identity = 91/233 (39.06%), Postives = 116/233 (49.79%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQP----------LAASAAAPQAPLPPPQSSGSGGAGDPLSTADIFASGPRLRPVSKVWGRP 669
            LM  MAWVLGEY  LA     A  +         G +   PST  ++V A+MKL AQ+G   P   H++  +++S+  DLQQRCLEF  +       +A VLPVDASCED+EAD  LS LD  V  AL+ GA  YSPPAE   D                  FN+TPYA P++P          L AS  AP          G+ G   P    +  A+  +LR V+ VWG+P
Sbjct:  594 LMDTMAWVLGEYAYLAEESLDAIVIKISALAQKPGHA---PSTKKYLVAAIMKLVAQAGTCPPVATHVIDDFTRSRDVDLQQRCLEFQGMLATANHLLAEVLPVDASCEDIEADAGLSFLDAYVQTALANGAASYSPPAEDDSDDDDSLGASVARKP----KFNITPYAEPTKPQHQIKVDHGGLPASNGAPN---------GTHGGNRPAPGPEA-ANTLQLRNVANVWGKP 809
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A4D9D583_9STRA (AP-2 complex subunit alpha n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D583_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.940e-26
Identity = 88/235 (37.45%), Postives = 120/235 (51.06%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLAST-PRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQPLAASAAAPQAPLPPPQSSGSGGAGDPLSTADIFASGPR------------LRPVSKVWGR 666
            L+Q M+W LGEYG L+   P+   E+   L    +   F DP T GFVV A++KL AQ+G     V+ L+ LYSQS+  DLQQRCLE+  L +  P+ +  VLPVDASCED++ DE+L  L+  V AA++ GA  Y PP E                        L PYA+P+  L  +       +P    +G    G  LST+   +SGP             LRPV+++W R
Sbjct:  500 LVQTMSWTLGEYGYLSKRLPQS--ELIEYLAADIAHRPFVDPCTRGFVVAAVVKLVAQTGSCPVAVSSLIALYSQSRNLDLQQRCLEYTALLQ-APSLLVDVLPVDASCEDLDVDESLPFLESFVQAAIARGAPRYCPPPE-----HVEVLGLAEGYQVKGPGLKLAPYAKPAHTLPGA-------VPGSLLAGLSVKGASLSTSSP-SSGPNPVCDTGSVAKQGLRPVAQIWSR 718
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A7S3HNE1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNE1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.460e-25
Identity = 75/176 (42.61%), Postives = 95/176 (53.98%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQPLA 528
            L Q +AWVLGEYG L ST     ++  KLC +   +   DP T   VVTA+ KL AQ+G     V   +  YS+S   D+QQRCLEF  L +  P  +  VLPVDASCED+E DE LS L G V +AL+ GA  Y+PP    D+                +   +TPYA P+ P A
Sbjct:  491 LAQAVAWVLGEYGFL-STSCSLEQIMDKLCQLT--LQCNDPLTRAHVVTAISKLVAQNGGCPAKVLAFMDRYSRSVNLDVQQRCLEFKALLKH-PNTLVEVLPVDASCEDIEIDEGLSFLQGYVQSALNLGAKPYTPPQHDDDEDADEGHS---------AKLKITPYAVPTLPAA 653
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A7S3VAQ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAQ8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 8.320e-25
Identity = 72/174 (41.38%), Postives = 97/174 (55.75%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQP 522
            L++ MAWVLGEY  L S      E+   LC +         ST   +V+A+MKL AQ+G   P  A ++  +++SK  DLQQRC+EF  +    P  +  +LPVDASCEDV+ D NLS +D  V  A++ GA  Y  P +      XXXXX         S+F LTPY +PS+P
Sbjct:  506 LIETMAWVLGEYAYL-SADYSLEEILNSLCAMVKKGKHLQQSTRKIIVSAIMKLVAQAGTCPPQAAKIIDNFTKSKDVDLQQRCIEFQNVITSAPHILGEILPVDASCEDVQVDPNLSFMDFFVGQAVADGAKPYEKPEDX-----XXXXXYAMTSTSKASAFKLTPYEKPSKP 673
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A7S1UU93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU93_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.270e-24
Identity = 77/175 (44.00%), Postives = 100/175 (57.14%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVA-SGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQP 522
            L++ MAW LGEYG L++      EV  KLC +A +  S    ST  F++ A+MKL AQ+G   P  A L+  ++ S+  DLQQRCLEF  L    P  +  VLPVDAS EDV+ DENL  LD  V  A++ GA  Y  P    + XXXXXXX          +F +TPY +P+ P
Sbjct:   34 LLETMAWCLGEYGYLSAVS-SLSEVLEKLCTIAQTHKSILAASTLKFLLGAIMKLVAQAGTCPPHAATLIDEFTHSRDPDLQQRCLEFQTLLTTAPQLLGQVLPVDASAEDVQVDENLHFLDAFVQEAVAGGASAYDKP----EXXXXXXXXAVYGGSTEAPAFKMTPYEKPTTP 203
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BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A812JM33_9DINO (AP-4 complex subunit epsilon n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JM33_9DINO)

HSP 1 Score: 112 bits (280), Expect = 3.320e-24
Identity = 72/174 (41.38%), Postives = 88/174 (50.57%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDXXXXXXXXXXXXXXXXSSFNLTPYARPSQP 522
            L+QV+AWVLGEY  LAS      E    L        F DP+T GF+VTALMKL  Q G  S     ++  Y  S+ +DLQQRC EF QL R+ PA M  VLP DASCED+  +++LS LD  V   L  GA  Y    E   +                 S N  PY  P++P
Sbjct:  483 LVQVIAWVLGEYARLASVDGYTIEDIADLLSECIERPFEDPATRGFLVTALMKLIGQHGVKSTTAEDIIRSYRSSRMTDLQQRCYEFEQL-RQSPAVMRKVLPYDASCEDIVVNKDLSFLDSFVRRKLDEGAKPYQSAVERAREQEGLAPKVEAELKP---SLNFMPYEAPTKP 652
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Match: A0A1Q9CE07_SYMMI (AP-4 complex subunit epsilon n=3 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CE07_SYMMI)

HSP 1 Score: 111 bits (277), Expect = 1.060e-23
Identity = 66/140 (47.14%), Postives = 80/140 (57.14%), Query Frame = 1 
Query:    1 LMQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAE 420
            L+QV+AWVLGEY  LAS    + E    L        F DP+T GF+VTALMKL  Q G  S     ++  Y  S+ +DLQQRC EF QL R+ PA M  VLP DASCED+  +++LS LD  V   L  GA  Y    E
Sbjct: 1513 LVQVIAWVLGEYARLASVDGYSIEDIADLLSECIERPFEDPATRGFLVTALMKLIGQHGVKSTTAEDIIRSYRSSRMTDLQQRCYEFEQL-RQSPAVMRKVLPYDASCEDIIVNKDLSFLDSFVRRKLDEGAKPYQTAIE 1651
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13219.2429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE2.710e-12286.01AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
A0A835Z519_9STRA1.520e-3748.84AP-2 complex subunit alpha n=1 Tax=Tribonema minus... [more]
A0A7S3XR32_HETAK1.060e-3257.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1B412_9STRA1.460e-2939.06Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A4D9D583_9STRA2.940e-2637.45AP-2 complex subunit alpha n=1 Tax=Nannochloropsis... [more]
A0A7S3HNE1_9STRA2.460e-2542.61Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3VAQ8_9STRA8.320e-2541.38Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1UU93_9STRA1.270e-2444.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A812JM33_9DINO3.320e-2441.38AP-4 complex subunit epsilon n=1 Tax=Symbiodinium ... [more]
A0A1Q9CE07_SYMMI1.060e-2347.14AP-4 complex subunit epsilon n=3 Tax=Symbiodinium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13219contigE-fasciculatus_F_contig13219:88..3450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.2
Seed ortholog evalue8.3e-106
Seed eggNOG ortholog2880.D7FX42
Preferred nameAP4E1
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCoatomer protein complex, gamma sub-unit
Ec32 orthologEc-10_004220.1
Exons5
Model size852
Cds size849
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13219.2429.1prot_E-fasciculatus_F_contig13219.2429.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13219 88..3447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.54214-CDS-E-fasciculatus_F_contig13219:87..3041622927825.54214-CDS-E-fasciculatus_F_contig13219:87..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 88..304 -
1695995711.0106618-CDS-E-fasciculatus_F_contig13219:87..3041695995711.0106618-CDS-E-fasciculatus_F_contig13219:87..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 88..304 -
1622927825.5656435-CDS-E-fasciculatus_F_contig13219:597..7131622927825.5656435-CDS-E-fasciculatus_F_contig13219:597..713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 598..713 -
1695995711.0231416-CDS-E-fasciculatus_F_contig13219:597..7131695995711.0231416-CDS-E-fasciculatus_F_contig13219:597..713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 598..713 -
1622927825.5823886-CDS-E-fasciculatus_F_contig13219:1269..14521622927825.5823886-CDS-E-fasciculatus_F_contig13219:1269..1452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 1270..1452 -
1695995711.0306711-CDS-E-fasciculatus_F_contig13219:1269..14521695995711.0306711-CDS-E-fasciculatus_F_contig13219:1269..1452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 1270..1452 -
1622927825.6003377-CDS-E-fasciculatus_F_contig13219:1925..20851622927825.6003377-CDS-E-fasciculatus_F_contig13219:1925..2085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 1926..2085 -
1695995711.038358-CDS-E-fasciculatus_F_contig13219:1925..20851695995711.038358-CDS-E-fasciculatus_F_contig13219:1925..2085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 1926..2085 -
1622927825.6216085-CDS-E-fasciculatus_F_contig13219:3274..34471622927825.6216085-CDS-E-fasciculatus_F_contig13219:3274..3447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 3275..3447 -
1695995711.0485435-CDS-E-fasciculatus_F_contig13219:3274..34471695995711.0485435-CDS-E-fasciculatus_F_contig13219:3274..3447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13219 3275..3447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.6395595-UTR-E-fasciculatus_F_contig13219:3447..34501622927825.6395595-UTR-E-fasciculatus_F_contig13219:3447..3450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13219 3448..3450 -
1695995711.0587828-UTR-E-fasciculatus_F_contig13219:3447..34501695995711.0587828-UTR-E-fasciculatus_F_contig13219:3447..3450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13219 3448..3450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13219.2429.1

>prot_E-fasciculatus_F_contig13219.2429.1 ID=prot_E-fasciculatus_F_contig13219.2429.1|Name=mRNA_E-fasciculatus_F_contig13219.2429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=283bp
MQVMAWVLGEYGSLASTPRGAREVSTKLCGVASGMSFRDPSTCGFVVTAL
MKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAV
LPVDASCEDVEADENLSHLDGIVTAALSAGAVGYSPPAEAGDDSEDEEAS
AAMGGAGGGSSFNLTPYARPSQPLAASAAAPQAPLPPPQSSGSGGAGDPL
STADIFASGPRLRPVSKVWGRPKQGEQKQPQQQPQSAAAAGAPGPGGRGE
TGAAVAAAGYPPAAAGAGPSRRGSGQSGSAPSQ
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mRNA from alignment at E-fasciculatus_F_contig13219:88..3450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13219.2429.1 ID=mRNA_E-fasciculatus_F_contig13219.2429.1|Name=mRNA_E-fasciculatus_F_contig13219.2429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3363bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13219:88..3450- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGATGCAAGTGATGGCGTGGGTGCTCGGCGAGTACGGCTCTCTCGCATC
CACCCCAAGGGGCGCTCGAGAGGTTTCCACCAAGCTCTGCGGCGTCGCCT
CCGGGATGTCCTTCCGCGACCCGAGCACCTGCGGCTTCGTGGTCACGGCC
CTCATGAAGCTCTCCGCGCAGTCGGGGTGAGTGAATTTTCTTTTGGGCTT
TGAAACGCGCTACTTTTTGAACGAAGTACGGGTTGGGTAGTGAATTCGGA
CTTAGTGCGTGCTGTATACCATCTAGCACGGGCAGGGCACTGGACAACAA
TTTTTCGGACTTCGCACGTGCCACATTGCATCTAGCACGGGCTGGGGAGT
GAATCACCCCCGGGGCTCGTCCCGTGGTCGCATAATTTCTACGTAGCACG
GGTTAATATAGGTTAATAGGTAGTAGGTGGTGACTAGTGAATTTGTTTTG
GACGTGACACGACGTGCTAAATCGGATTGAGGATTCAATTTATTTCGGAC
GTGGCACGGGATACACTACATAGAGCACGGGTCCGGGAGTGAAATTCGTT
CGGGTTCCGCACGTGATGGGGAGTGAAAATATTTCGGCCTTTTGCAGTAG
AACGTGCTATACAGGGTATCTATGAATAGCTCGTAACACGGGTCGGCGAG
TGAATTCCTTCTGAAAGTGGTACGAGTGAATCCCTTCTGAACGTGGTACG
TGTTCCTATTTATCATCGCATGCTCGCACTGGTTCGGGAGTGAAATTATT
CCCGGCAAGCAGGTGCCGTGTGCATCTAAGCATGGGTTGGGGACTGCAGT
TCCTTGGGTGGGGGAGTGAGCTTATTTCGGGCTGTGCGCGAGTTATTGCA
ACTCCGGTCAAATCTAGCGCGGATTGGGAACGGGGTGCAGTTCTCTCGGA
CGTGGCGCACGTGCTACATGAATGCATCGATTCGGGTTGGGAAGTGAATT
ATTTCGGAAGTTCGGCATGTGCTGCATAAAGCATCTGGCACAGGAAGTGA
AAATTGTTTGGACGCTGCACGTCCTTACCTGTTGAGCATCTAGCATATAT
TGGGGAGTGAAATTGTATCGGACTCGGAACTCCGTTCATCAGCAGGTAGC
ATTTGGCAAGGGTTGGGGAATGAACTCATTTCCGATTTGGCACGCTCCAT
ACCACGTAGCACTGGTTGGAGCGAGAATTGTTTAGAACTTGGCACATATC
GCACAGCATAGCATCATCCAGCACAGGTGGAGTGACTTTCTTTTGGAAGT
GCTGAATACAATATCATCTAGCATGTTTAGGAGCGCCCCCTCTCTCACAC
TAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGTGTG
TTTTGTCCTTGTCAGCGAGGTGTCCCCGCCCGTGGCGCACCTGCTGACGC
TCTACTCGCAGTCCAAGCAGTCGGATCTTCAGCAGCGGTGCCTGGAGTTC
CTGCAGCTGGCGAGGGAGGGACCGGCGGCCATGGCGGCCGTGCTTCCCGT
CGACGCAAGCTGCGAGGATGTTGAGGTGTGCTGCGTCTGCTTTTCTTGAT
AGCATCGACCGCGACCGCTCTAACCGGCCGCCCAATGAAGATACATCAGT
CAAGTGTGTATGCTCTAAAGCCAAGTGAACAATGAACATCAATGTATTTT
TTCTTGTTCTCTTCAAACAAAAGTATTATCCTGCACCACATTTTGATTGC
GCAGTTCGACCTGGCCCCTCGAACAGGCAGCTATCGTTCACCCTTTTTTC
TTGCACCCTCGGTTGCGTATGCGTGTGCGAGTGTGTGCCTTTTGTGCTTT
TCGCTCGGAATTTCATGCCATCCTTACAACCACCCAACCCACATCCATGC
ATCTTCCAATCCAACCATCCACCCGTCCATTCATCCAACCATCCATGGGT
TTGTGCTTCTACCGGAAATTTCTCGCCCGTCATTCATCCATCGATCCATC
CATTCATTCATCGTTCCACCTTCCATCCATCCTTTCATGATCCGGTAGGC
CGACGAGAACCTGAGCCACCTGGACGGGATCGTGACGGCGGCCCTGTCGG
CGGGGGCGGTGGGGTACTCACCTCCCGCCGAGGCCGGGGACGACTCGGAA
GACGAGGAGGCGTCGGCGGCGATGGGGGGAGCCGGGGGAGGGTCCTCCTT
CAACCTCACGCCGTACGCTCGGCCTTCGCAGGTGCGTGTTTGCGCGATGT
ACTGTAGGCATCGAAGAAAACGTCGGGCTTTTGTCCCGCCCTCTGATGTT
CTTGTTTTTGCTATTTTCGTTGTTGTTGTTGCTGCCGTTTGTCATAGTTG
TCGTTGTTGTTATGGATGCATCGTAGCGCTCCCTTTTCAAGACAAAGGTA
GTGTGATGGGGTTGGTGGGTGTCCTTGAGTACGCGGTTGGCAGTTCCTTT
ATTGTCAACTCCCGGGCGTCTTGTAAGCGTGTTCTCCGCAGCAGAAGATG
AAGGCATGGCGTGGGTTGAGTGTAGTAAGCGTTCAATACCCATTTTCATA
CAGTCGTTCATTCACGTTGGTCCATACACACATTTTGCGGGCCGCCTTCT
TGCGCGGCGAACGCTGCAAACCTTGTATGCATGCCCCCGTCGTCTTTGGG
AGTGCCCAGACCGGAAAACATCCCAAGTCTTCCGAATCTGGCTGCCAAGA
CAACACAAGGCACCACTCATTTTGCGCTTCTCGCATCGCTGCCCCCCCGT
CCCCCCCCCCCGTGCGTGTCACTCTTGCCGTGATTAGCCTCTGGCTGCGA
GTGCTGCGGCTCCGCAGGCGCCGCTCCCGCCTCCTCAGTCGTCCGGGTCC
GGCGGGGCGGGGGATCCCCTTTCTACGGCCGACATTTTCGCCAGCGGCCC
CAGGTACGTGGTGTGCAGCAACCCGGTTGTTGTATTGGTGTTGGTGTTGG
TGGTGTTGCTCTTTGTTGTCGTCCGTACTGCCTGGGTACACGCTTTCATC
CAACACGAGGCGTTAGACCTTCCCCGTTTACCCGCGAGGTGATCGAAGAC
ACTGCTCTGCCGCCGACACGTTGTATTTTCCCTCTCGTGTCATCTTGATT
CCTAACCTTCGTTTCGTTTTTTTTGCCCGGCCGGTTCGTTGAAACCGTTG
CCTCCCGTTTCGCCATGAACCTCCGTCCCCCCACCTCCACTTTTAGGCTG
AGACCCGTGTCGAAAGTATGGGGAAGACCCAAGCAGGGCGAGCAGAAACA
GCCGCAGCAGCAGCCGCAATCAGCGGCGGCAGCCGGTGCTCCCGGCCCGG
GGGGTCGCGGGGAGACAGGCGCGGCGGTAGCAGCGGCTGGCTATCCACCG
GCCGCTGCTGGGGCGGGGCCTTCCCGAAGGGGGAGTGGGCAGAGCGGGAG
CGCCCCTTCGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13219:88..3450-

>mRNA_E-fasciculatus_F_contig13219.2429.1 ID=mRNA_E-fasciculatus_F_contig13219.2429.1|Name=mRNA_E-fasciculatus_F_contig13219.2429.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1698bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13219:88..3450- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGTGATGGCGTGGGTGCTCGGCGAGTACGGCTCTCTCGCATCCAC
CCCAAGGGGCGCTCGAGAGGTTTCCACCAAGCTCTGCGGCGTCGCCTCCG
GGATGTCCTTCCGCGACCCGAGCACCTGCGGCTTCGTGGTCACGGCCCTC
ATGAAGCTCTCCGCGCAGTCGGGATGCAAGTGATGGCGTGGGTGCTCGGC
GAGTACGGCTCTCTCGCATCCACCCCAAGGGGCGCTCGAGAGGTTTCCAC
CAAGCTCTGCGGCGTCGCCTCCGGGATGTCCTTCCGCGACCCGAGCACCT
GCGGCTTCGTGGTCACGGCCCTCATGAAGCTCTCCGCGCAGTCGGGCGAG
GTGTCCCCGCCCGTGGCGCACCTGCTGACGCTCTACTCGCAGTCCAAGCA
GTCGGATCTTCAGCAGCGGTGCCTGGAGTTCCTGCAGCTGGCGAGGGAGG
GACCGGCGGCCATGGCGGCCGTGCTTCCCGTCGACGCAAGCTGCGAGGAT
GTTGAGCGAGGTGTCCCCGCCCGTGGCGCACCTGCTGACGCTCTACTCGC
AGTCCAAGCAGTCGGATCTTCAGCAGCGGTGCCTGGAGTTCCTGCAGCTG
GCGAGGGAGGGACCGGCGGCCATGGCGGCCGTGCTTCCCGTCGACGCAAG
CTGCGAGGATGTTGAGGCCGACGAGAACCTGAGCCACCTGGACGGGATCG
TGACGGCGGCCCTGTCGGCGGGGGCGGTGGGGTACTCACCTCCCGCCGAG
GCCGGGGACGACTCGGAAGACGAGGAGGCGTCGGCGGCGATGGGGGGAGC
CGGGGGAGGGTCCTCCTTCAACCTCACGCCGTACGCTCGGCCTTCGCAGG
CCGACGAGAACCTGAGCCACCTGGACGGGATCGTGACGGCGGCCCTGTCG
GCGGGGGCGGTGGGGTACTCACCTCCCGCCGAGGCCGGGGACGACTCGGA
AGACGAGGAGGCGTCGGCGGCGATGGGGGGAGCCGGGGGAGGGTCCTCCT
TCAACCTCACGCCGTACGCTCGGCCTTCGCAGCCTCTGGCTGCGAGTGCT
GCGGCTCCGCAGGCGCCGCTCCCGCCTCCTCAGTCGTCCGGGTCCGGCGG
GGCGGGGGATCCCCTTTCTACGGCCGACATTTTCGCCAGCGGCCCCAGCC
TCTGGCTGCGAGTGCTGCGGCTCCGCAGGCGCCGCTCCCGCCTCCTCAGT
CGTCCGGGTCCGGCGGGGCGGGGGATCCCCTTTCTACGGCCGACATTTTC
GCCAGCGGCCCCAGGCTGAGACCCGTGTCGAAAGTATGGGGAAGACCCAA
GCAGGGCGAGCAGAAACAGCCGCAGCAGCAGCCGCAATCAGCGGCGGCAG
CCGGTGCTCCCGGCCCGGGGGGTCGCGGGGAGACAGGCGCGGCGGTAGCA
GCGGCTGGCTATCCACCGGCCGCTGCTGGGGCGGGGCCTTCCCGAAGGGG
GAGTGGGCAGAGCGGGAGCGCCCCTTCGCAGGCTGAGACCCGTGTCGAAA
GTATGGGGAAGACCCAAGCAGGGCGAGCAGAAACAGCCGCAGCAGCAGCC
GCAATCAGCGGCGGCAGCCGGTGCTCCCGGCCCGGGGGGTCGCGGGGAGA
CAGGCGCGGCGGTAGCAGCGGCTGGCTATCCACCGGCCGCTGCTGGGGCG
GGGCCTTCCCGAAGGGGGAGTGGGCAGAGCGGGAGCGCCCCTTCGCAG
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