mRNA_E-fasciculatus_F_contig13215.2426.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13215.2426.1
Unique NamemRNA_E-fasciculatus_F_contig13215.2426.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13215.2426.1 vs. uniprot
Match: D8LLB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB0_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 1.210e-107
Identity = 251/264 (95.08%), Postives = 251/264 (95.08%), Query Frame = 1 
Query:    4 QQFERSRDGERTSSRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGVGEDGGGSFGIIPGSHVTVLPSFMDDLKTRESIPVRTVVEPTLAVYTALGGGDAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSYVQFPFKPPSAHVLHPPMVNLNADERRYREICAMDDDQEEMLEPLGLGLLGNSSGAPSA 795
            QQ ERSRDGERTSSRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXX    VA VGEDGGGSFGIIPGSHVTVLPSFMDDLKTRESIPVRTVVEP LAVYTALGG DAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSYVQFPFKPPSAHVLHPPMVNLNADERRYREICAMDDDQEEMLEPLGLGLLGNSSGAPSA
Sbjct:  219 QQLERSRDGERTSSRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHYGDEXXXXXXXXXXXXXXXXGG--VASVGEDGGGSFGIIPGSHVTVLPSFMDDLKTRESIPVRTVVEPALAVYTALGGRDAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSYVQFPFKPPSAHVLHPPMVNLNADERRYREICAMDDDQEEMLEPLGLGLLGNSSGAPSA 480
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BLAST of mRNA_E-fasciculatus_F_contig13215.2426.1 vs. uniprot
Match: A0A835YT95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT95_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.160e-6
Identity = 52/163 (31.90%), Postives = 68/163 (41.72%), Query Frame = 1 
Query:  265 GSHVTVLPSFMDDLKTRESIPVRTVVEPTLAVYTALGGGDAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSY---VQFPFKPPSAHVLHPPMVNLNADERRYREICAMDDDQEEML 744
            G    +LPSFMD+   R    +   VEP L  +T  G                                EPV KFR RGRIGRGGRV++DRVPV    P  E  + +PE    VV SS     + P+       +      L  +E + +E+    DDQ+E L
Sbjct:  334 GEDTALLPSFMDNFMNRTKASMSGRVEPALPAFTVRGI------------------------------CEPVTKFRCRGRIGRGGRVVFDRVPVYE--PENEYSI-EPEA--YVVTSSVPHKYEVPWDVLDLEHISANCPRLAVNEAKLQEVYMGADDQDETL 461
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13215.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLB0_ECTSI1.210e-10795.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT95_9STRA6.160e-631.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13215contigE-fasciculatus_F_contig13215:1291..3555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue1.3e-88
Seed eggNOG ortholog2880.D8LLB0
Preferred nameEPC1
KEGG koko:K11322
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.internal peptidyl-lysine acetylation
EggNOG OGsKOG2261@1,KOG2261@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size948
Cds size948
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13215.2426.1prot_E-fasciculatus_F_contig13215.2426.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13215 1291..3555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927825.2817264-CDS-E-fasciculatus_F_contig13215:1290..15541622927825.2817264-CDS-E-fasciculatus_F_contig13215:1290..1554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13215 1291..1554 -
1695995710.931576-CDS-E-fasciculatus_F_contig13215:1290..15541695995710.931576-CDS-E-fasciculatus_F_contig13215:1290..1554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13215 1291..1554 -
1622927825.304605-CDS-E-fasciculatus_F_contig13215:2290..24801622927825.304605-CDS-E-fasciculatus_F_contig13215:2290..2480Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13215 2291..2480 -
1695995710.9409788-CDS-E-fasciculatus_F_contig13215:2290..24801695995710.9409788-CDS-E-fasciculatus_F_contig13215:2290..2480Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13215 2291..2480 -
1622927825.3270648-CDS-E-fasciculatus_F_contig13215:3061..35551622927825.3270648-CDS-E-fasciculatus_F_contig13215:3061..3555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13215 3062..3555 -
1695995710.9505217-CDS-E-fasciculatus_F_contig13215:3061..35551695995710.9505217-CDS-E-fasciculatus_F_contig13215:3061..3555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13215 3062..3555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13215.2426.1

>prot_E-fasciculatus_F_contig13215.2426.1 ID=prot_E-fasciculatus_F_contig13215.2426.1|Name=mRNA_E-fasciculatus_F_contig13215.2426.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=316bp
QQQFERSRDGERTSSRKSKKRKERERASRAAGGGGGGDPGGGGSMGGEDH
YGEEDEDGDGYWGGGGGASGGGVAGVGEDGGGSFGIIPGSHVTVLPSFMD
DLKTRESIPVRTVVEPTLAVYTALGGGDAKGKGRGGGRERERAGGPGGGK
GKARVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAP
VVVHSSYVQFPFKPPSAHVLHPPMVNLNADERRYREICAMDDDQEEMLEP
LGLGLLGNSSGAPSASAAAAAAAAAATAGGGDPRAAAAAAAAAAAAASSS
SSSSSAPKIKYAIEV*
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mRNA from alignment at E-fasciculatus_F_contig13215:1291..3555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13215.2426.1 ID=mRNA_E-fasciculatus_F_contig13215.2426.1|Name=mRNA_E-fasciculatus_F_contig13215.2426.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2265bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13215:1291..3555- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGTTCGAGCGGAGCCGGGATGGGGAGCGGACTTCCTCCCGCAA
GTCCAAGAAGAGAAAGGAGAGAGAACGGGCATCGAGAGCGGCCGGCGGCG
GCGGGGGGGGGGACCCCGGTGGCGGCGGCAGCATGGGGGGGGAAGACCAC
TACGGGGAAGAGGACGAGGACGGCGACGGCTACTGGGGGGGGGGGGGGGG
AGCGTCGGGAGGAGGCGTCGCCGGCGTCGGGGAGGACGGGGGGGGATCGT
TCGGGATCATCCCCGGGTCCCACGTCACCGTGCTGCCGTCCTTCATGGAC
GACCTCAAGACGAGGGAGAGCATACCGGTCCGGACGGTGGTGGAGCCAAC
TCTGGCGGTGTACACGGCGTTAGGGGGGGGCGACGCCAAGGGCAAAGGCA
GGGGGGGGGGCAGAGAAAGAGAAAGAGCGGGCGGCCCGGGGGGAGGGAAA
GGGAAGGCGCGCGTGGGAGTGGAGCCGGTGTACAAATTCAGACTGTGAGT
TTTGGAGACGGGGAGTGTCGGTGTTTTTGTTGTTGGTCATGTTTCTCGTG
TGGAAGGCGGTTTGCGGGCTCGCGTTTACGTTTATCGGTTGCGGTGGTGC
GGGCTGCTTGTTCCTCGGGTTTTATTGGAGCTTTTGTTGTCTCTGTTGCT
GGAGGTGCTGCTGCCAATGGGTGTGCGGAGTGCGGAGGACGTGAGGTTTC
GTTTTTTGCTGTTTTCTTTTCGTGTGTCCTGGCGGTCCTCTTCAGTAGCG
CACCCTCTCGTCGGAGCACTTGTGACTTGCGAGGAGACCCTTCTCGCGGC
AGGCACCCTCCCAGCTTGCGGTCTCTCGTGCGCGATTTGTCTCTTGACGT
CGCCACGTTTTTGTAACGGGTTACATTGGCTGTTTTCTCGTTCTTTTTAC
ACTGTTTTTTCATGCCTTTCTTGGTACAGACGTGTCTCACCTTTGCGCCC
GGTGTGTTGCTGCAACTGACTTACTGTTTCGCCGTTTGTTCTTGAACCAC
TATGCTTGTCCGTCATCACCGCCCTTACCACTCACCGCCTTCACCACTCA
CCGCCTTCACCACCACCACCACCAGACGAGGCAGGATCGGGCGAGGAGGG
AGGGTAATCTGGGACCGCGTCCCAGTGAGGGGGGCCGTACCCGCGAGAGA
GGACGGCCTAGCAGACCCGGAAGAGGCGCCTGTGGTGGTGCACAGCAGCT
ACGTCCAGTTCCCCTTCAAGCCTCCGTCGGCTCACGTCCTGCACCCGCCG
ATGGTCAACCTCAACGTGAGTGGGATCATCGTTGACGTGGGTGTGTGTTT
GTCGTGAGTAGCAGTGCCCGCGCTATAACCCCGGCTGACCGATGAACAAG
ACGTGTGTGTATGTTTGTTGTTGGCATTTTGCCGCGCTAACCGGCTGGCC
GGTGATAGACATTTACGTGTCTCATTGCGGCTATTACGCTTCTGAAGGCC
ATGTGTGTGTTGCTGTTTTTTTTGCAAGGGTTTTGTGGAGGGGATGCGGA
GGGAGCGGGGGTCGGACGGAAGGATGAGGGGGTATTGTTTTGGGTACCCC
TTGCACCCCGCTGTAAGGCGGAGGACGAGTTGATCAACTGTTCATCTGTT
TGCAACCGGAGGCGCACGCGACCCCAGGGGCAGTGTAGGGGTATCGGTGA
GATCAAAGGCAGTCACTTGGGATGACACCGGGCGGTCCTTACCTTGTTTT
CCTGCTAGTTCGGGGTGGATTTGAAGAACACAGGAAGAAGGCTCGTGGTG
TTTTTCGATGGCGAATGGGCGGGTAAATGATTGACTTGGGACGCCTTGGT
GGAGGCACCGACTTTCTACGATTTCCCGAAATTTGTCGCAACCGACCTCC
AACAGCACCACCACGCACTGCTGCAGTATCACCAGCTGAGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCGCTCCCCCGTGCCCCCCCTCCCGTGGT
TGCTCTCACCCGTCGTTGGCTCTCCTCTCACCCGGTCACACTGGCGTGCA
GGCCGACGAGCGGCGGTACCGCGAGATCTGCGCGATGGACGACGACCAGG
AGGAGATGTTGGAACCTCTTGGCTTGGGGCTGCTGGGGAACTCGTCAGGA
GCGCCTTCCGCTTCGGCGGCGGCGGCAGCGGCGGCGGCAGCGGCGACGGC
GGGAGGAGGCGACCCTAGAGCGGCGGCGGCGGCGGCAGCAGCAGCAGCAG
CGGCAGCATCGTCGTCGTCGTCATCGTCGTCCGCACCCAAGATTAAGTAC
GCCATTGAGGTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13215:1291..3555-

>mRNA_E-fasciculatus_F_contig13215.2426.1 ID=mRNA_E-fasciculatus_F_contig13215.2426.1|Name=mRNA_E-fasciculatus_F_contig13215.2426.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1896bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13215:1291..3555- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAGTTCGAGCGGAGCCGGGATGGGGAGCGGACTTCCTCCCGCAA
GTCCAAGAAGAGAAAGGAGAGAGAACGGGCATCGAGAGCGGCCGGCGGCG
GCGGGGGGGGGGACCCCGGTGGCGGCGGCAGCATGGGGGGGGAAGACCAC
TACGGGGAAGAGGACGAGGACGGCGACGGCTACTGGGGGGGGGGGGGGGG
AGCGTCGGGAGGAGGCGTCGCCGGCGTCGGGGAGGACGGGGGGGGATCGT
TCGGGATCATCCCCGGGTCCCACGTCACCGTGCTGCCGTCCTTCATGGAC
GACCTCAAGACGAGGGAGAGCATACCGGTCCGGACGGTGGTGGAGCCAAC
TCTGGCGGTGTACACGGCGTTAGGGGGGGGCGACGCCAAGGGCAAAGGCA
GGGGGGGGGGCAGAGAAAGAGAAAGAGCGGGCGGCCCGGGGGGAGGGAAA
GGGAAGGCGCGCGTGGGAGTGGAGCCGGTGTACAAATTCAGACTCAGCAG
CAGTTCGAGCGGAGCCGGGATGGGGAGCGGACTTCCTCCCGCAAGTCCAA
GAAGAGAAAGGAGAGAGAACGGGCATCGAGAGCGGCCGGCGGCGGCGGGG
GGGGGGACCCCGGTGGCGGCGGCAGCATGGGGGGGGAAGACCACTACGGG
GAAGAGGACGAGGACGGCGACGGCTACTGGGGGGGGGGGGGGGGAGCGTC
GGGAGGAGGCGTCGCCGGCGTCGGGGAGGACGGGGGGGGATCGTTCGGGA
TCATCCCCGGGTCCCACGTCACCGTGCTGCCGTCCTTCATGGACGACCTC
AAGACGAGGGAGAGCATACCGGTCCGGACGGTGGTGGAGCCAACTCTGGC
GGTGTACACGGCGTTAGGGGGGGGCGACGCCAAGGGCAAAGGCAGGGGGG
GGGGCAGAGAAAGAGAAAGAGCGGGCGGCCCGGGGGGAGGGAAAGGGAAG
GCGCGCGTGGGAGTGGAGCCGGTGTACAAATTCAGACTACGAGGCAGGAT
CGGGCGAGGAGGGAGGGTAATCTGGGACCGCGTCCCAGTGAGGGGGGCCG
TACCCGCGAGAGAGGACGGCCTAGCAGACCCGGAAGAGGCGCCTGTGGTG
GTGCACAGCAGCTACGTCCAGTTCCCCTTCAAGCCTCCGTCGGCTCACGT
CCTGCACCCGCCGATGGTCAACCTCAACACGAGGCAGGATCGGGCGAGGA
GGGAGGGTAATCTGGGACCGCGTCCCAGTGAGGGGGGCCGTACCCGCGAG
AGAGGACGGCCTAGCAGACCCGGAAGAGGCGCCTGTGGTGGTGCACAGCA
GCTACGTCCAGTTCCCCTTCAAGCCTCCGTCGGCTCACGTCCTGCACCCG
CCGATGGTCAACCTCAACGCCGACGAGCGGCGGTACCGCGAGATCTGCGC
GATGGACGACGACCAGGAGGAGATGTTGGAACCTCTTGGCTTGGGGCTGC
TGGGGAACTCGTCAGGAGCGCCTTCCGCTTCGGCGGCGGCGGCAGCGGCG
GCGGCAGCGGCGACGGCGGGAGGAGGCGACCCTAGAGCGGCGGCGGCGGC
GGCAGCAGCAGCAGCAGCGGCAGCATCGTCGTCGTCGTCATCGTCGTCCG
CACCCAAGATTAAGTACGCCATTGAGGTGTAGGCCGACGAGCGGCGGTAC
CGCGAGATCTGCGCGATGGACGACGACCAGGAGGAGATGTTGGAACCTCT
TGGCTTGGGGCTGCTGGGGAACTCGTCAGGAGCGCCTTCCGCTTCGGCGG
CGGCGGCAGCGGCGGCGGCAGCGGCGACGGCGGGAGGAGGCGACCCTAGA
GCGGCGGCGGCGGCGGCAGCAGCAGCAGCAGCGGCAGCATCGTCGTCGTC
GTCATCGTCGTCCGCACCCAAGATTAAGTACGCCATTGAGGTGTAG
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