mRNA_E-fasciculatus_F_contig13211.2423.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13211.2423.1
Unique NamemRNA_E-fasciculatus_F_contig13211.2423.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5K4F4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.330e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 HIGKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            H GKEGY  +VVE  CDH+GRI AATK YPGAENDK +I+ D        E+PWKS K+KL NADGTETEYTG
Sbjct:  100 HTGKEGYTSLVVECTCDHSGRIIAATKTYPGAENDKKVIARDKSIWRVRDEDPWKSYKFKLYNADGTETEYTG 172          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.690e-24
Identity = 49/71 (69.01%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    7 GKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            GKEGY  VVVEA CDH GRI AATK YPG+ENDKTII  D        EEPW S+KYKL NADG+ETEY G
Sbjct:   73 GKEGYPTVVVEATCDHTGRIIAATKSYPGSENDKTIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKG 143          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5K337_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K337_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.740e-24
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 HIGKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            H GKEG   +VVE  CDH+GRI AATK YPGAENDKT+I+ D        EEPWKS K+KL NADGTETEYTG
Sbjct:   66 HTGKEGDTSLVVECTCDHSGRIIAATKTYPGAENDKTVIARDKSIWRIRDEEPWKSYKFKLYNADGTETEYTG 138          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5JJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.970e-23
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 GKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEY 189
            GKEGY  VVVEA CDH GRI AATK YPG+ENDKTII  D        EEPW ++KYKL NADG+ETEY
Sbjct:   73 GKEGYPTVVVEATCDHTGRIIAATKSYPGSENDKTIIQRDKSIWRIRDEEPWNTLKYKLYNADGSETEY 141          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5KW69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW69_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.090e-23
Identity = 48/71 (67.61%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    7 GKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            GKEGY  VVVEA CDH GRI AATK YPG+ NDKTII  D        EEPW S+KYKL NADG+ETEY G
Sbjct:   73 GKEGYPTVVVEATCDHTGRIIAATKSYPGSANDKTIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKG 143          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5K1K5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.240e-23
Identity = 47/71 (66.20%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    7 GKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            GKEGY  VVVEA CDH G I AATK YPG+ENDK+II  D        EEPW S+KYKL NADG+ETEY G
Sbjct:   73 GKEGYPTVVVEATCDHTGHIIAATKSYPGSENDKSIIQRDKSIWRIRDEEPWSSLKYKLYNADGSETEYKG 143          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.400e-23
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    7 GKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISC--------DEEPWKSMKYKLRNADGTETEYTG 195
            GKEGY  +VVE  CDH+GRI AATK YPGAENDKT+I+         DEEPWKS K+KL NADGTETE TG
Sbjct:   84 GKEGYTSLVVECTCDHSGRIIAATKTYPGAENDKTVIARGKFIWRIRDEEPWKSYKFKLYNADGTETECTG 154          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.160e-18
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 HIGKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            H GKEGY  VV EA+CDHAGRI A+TK YPGAENDKT++  D        EEPW S KY++ +  G  TE+TG
Sbjct:   71 HKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTG 143          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.570e-18
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 HIGKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            H GKEGY  VV EA+CDHAGRI A+TK YPGAENDKT++  D        EEPW S KY++ +  G  TE+TG
Sbjct:  303 HKGKEGYTTVVFEAICDHAGRILASTKGYPGAENDKTVVQRDLSVRRVEGEEPWVSYKYEMYDETGDVTEHTG 375          
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.060e-17
Identity = 44/62 (70.97%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   40 AMCDHAGRI--PAATKCYPGAENDKTIISCD--------EEPWKSMKYKLRNADGTETEYTG 195
            A+ D AGR   P   KCYPGAENDKTIIS D        EEPWKSMKYKLRNADGTETEYTG
Sbjct:   78 AVRDVAGRRCPPLELKCYPGAENDKTIISRDKSVWRIRDEEPWKSMKYKLRNADGTETEYTG 139          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13211.2423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K4F4_9PHAE6.330e-2465.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K604_9PHAE8.690e-2469.01Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K337_9PHAE8.740e-2467.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM8_9PHAE1.970e-2368.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW69_9PHAE2.090e-2367.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K5_9PHAE3.240e-2366.20Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU81_9PHAE6.400e-2367.61DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KRU1_9PHAE1.160e-1857.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0H2_9PHAE4.570e-1857.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV01_ECTSI7.060e-1770.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13211contigE-fasciculatus_F_contig13211:109..303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHarbinger transposase-derived nuclease domain
Ec32 orthologEc-00_003910.1
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.9593463-CDS-E-fasciculatus_F_contig13211:108..3031622927824.9593463-CDS-E-fasciculatus_F_contig13211:108..303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13211 109..303 +
1695995710.820241-CDS-E-fasciculatus_F_contig13211:108..3031695995710.820241-CDS-E-fasciculatus_F_contig13211:108..303Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13211 109..303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13211.2423.1prot_E-fasciculatus_F_contig13211.2423.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13211 109..303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13211.2423.1

>prot_E-fasciculatus_F_contig13211.2423.1 ID=prot_E-fasciculatus_F_contig13211.2423.1|Name=mRNA_E-fasciculatus_F_contig13211.2423.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=65bp
HIGKEGYAFVVVEAMCDHAGRIPAATKCYPGAENDKTIISCDEEPWKSMK
YKLRNADGTETEYTG
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mRNA from alignment at E-fasciculatus_F_contig13211:109..303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13211.2423.1 ID=mRNA_E-fasciculatus_F_contig13211.2423.1|Name=mRNA_E-fasciculatus_F_contig13211.2423.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13211:109..303+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACATCGGCAAGGAGGGCTATGCCTTTGTCGTTGTGGAGGCGATGTGTGA CCATGCTGGCCGCATTCCTGCGGCCACGAAGTGCTACCCCGGCGCCGAGA ATGACAAGACAATCATCTCTTGCGACGAGGAACCCTGGAAGAGCATGAAG TACAAGCTCAGGAACGCCGACGGCACAGAGACGGAGTACACAGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13211:109..303+

>mRNA_E-fasciculatus_F_contig13211.2423.1 ID=mRNA_E-fasciculatus_F_contig13211.2423.1|Name=mRNA_E-fasciculatus_F_contig13211.2423.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13211:109..303+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACATCGGCAAGGAGGGCTATGCCTTTGTCGTTGTGGAGGCGATGTGTGA
CCATGCTGGCCGCATTCCTGCGGCCACGAAGTGCTACCCCGGCGCCGAGA
ATGACAAGACAATCATCTCTTGCGACGAGGAACCCTGGAAGAGCATGAAG
TACAAGCTCAGGAACGCCGACGGCACAGAGACGGAGTACACAGGACACAT
CGGCAAGGAGGGCTATGCCTTTGTCGTTGTGGAGGCGATGTGTGACCATG
CTGGCCGCATTCCTGCGGCCACGAAGTGCTACCCCGGCGCCGAGAATGAC
AAGACAATCATCTCTTGCGACGAGGAACCCTGGAAGAGCATGAAGTACAA
GCTCAGGAACGCCGACGGCACAGAGACGGAGTACACAGGA
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