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Homology
BLAST of mRNA_E-fasciculatus_F_contig1321.2422.1 vs. uniprot
Match: A0A6H5KNZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ8_9PHAE) HSP 1 Score: 243 bits (620), Expect = 5.310e-72 Identity = 241/366 (65.85%), Postives = 247/366 (67.49%), Query Frame = 2
Query: 254 MPRPSGFTDAELAAAAWRRNMKNTGANAQDVEQRERSAQTERKAXXXXXXXXXXXXXXXXXXXPSSSGSKKKSNRDKDGRSKRDAVARKSIRKSKXXXXXXXXXXXXXRSVSMGSVDSLGRQRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPASGRXXXXXXXXGEEMDDLEKEFGWRGAMARASRSPSITSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSLSSDGRVFFEDVDGERGVEPQAAGAEDPMARVGLLGMLGSTDDVPSDPRRPDHDDRDARWRGGSRAGFPPGARTGIGTSYTARGRGARGESSSELAMERGRHRDRRXXXXXXXRGGDSEEGEGEGVHGRGR 1351
MPRPSGFT+AELAAAAWRRNMKN GANAQDVEQRERSAQTER + XXXXXXXXXXXXXXX AVARKSIRKSK RSVSMGSVDSLGRQRV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX EM+DLEKEFGWRG R S S S RSLSSDGRVF ED DG R VEPQAAGAEDPMARVGLLGML STDDVP RDARWRGG RAGFPPGARTGIGTS TARGRGA GESSSELA +R RDRR XXXX GDSE+GE E +HGRGR
Sbjct: 1 MPRPSGFTEAELAAAAWRRNMKNKGANAQDVEQRERSAQTERGSERNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---AVARKSIRKSKSKRRERKKRGGRSRSVSMGSVDSLGRQRVRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXEMNDLEKEFGWRGMXGGGGRGWSSASSSGSSSG-----------------------RSLSSDGRVFVEDADGARDVEPQAAGAEDPMARVGLLGMLXSTDDVPXXXXXXXXXXRDARWRGG-RAGFPPGARTGIGTS-TARGRGASGESSSELAWKRACLRDRRERGXXXXXSGDSEDGEREELHGRGR 335
BLAST of mRNA_E-fasciculatus_F_contig1321.2422.1 vs. uniprot
Match: D8LIX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX5_ECTSI) HSP 1 Score: 197 bits (501), Expect = 1.920e-55 Identity = 196/367 (53.41%), Postives = 200/367 (54.50%), Query Frame = 2
Query: 254 MPRPSGFTDAELAAAAWRRNMKNTGANAQDVEQRERSAQTERKAXXXXXXXXXXXXXXXXXXXPSSSGSKKKSNRDKDGRSKRD-AVARKSIRKSKXXXXXXXXXXXXXRSVSMGSVDSLGRQRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPASGRXXXXXXXXGEEMDDLEKEFGWRGAMARASRSPSITSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSLSSDGRVFFEDVDGERGVEPQAAGAEDPMARVGLLGMLGSTDDVPSDPRRPDHDDRDARWRGGSRAGFPPGARTGIGTSYTARGRGARGESSSELAMERGRHRDRRXXXXXXXRGGDSEEGEGEGVHGRGR 1351
MPRPSGFTDAELAAAAWRRNMKN GANAQ +EQRE+SAQTERKA XXXXXXXXXXXXXXXXX AVARKSIRKSK RSVSMG S+TS XXXXXXXXXXXXXXXX RRSLSSDGRVFFEDVDGER VEPQAA AEDPMARVGLLGML STDDV RDARWRGG RAGFPPGARTGI TS TARGRGARGESSSELA ERGR R RR RGG SEEG GE +HGRGR
Sbjct: 1 MPRPSGFTDAELAAAAWRRNMKNKGANAQGIEQREQSAQTERKAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARKSIRKSKSKRRERKERGGRSRSVSMGR------------------------------------------------------------------------------------SVTS-----------GXXXXXXXXXXXXXXXXGRRSLSSDGRVFFEDVDGERDVEPQAARAEDPMARVGLLGMLXSTDDVXXXXXXXXXXXRDARWRGG-RAGFPPGARTGIATS-TARGRGARGESSSELAWERGRLRGRRERGRRGARGGVSEEGGGEDLHGRGR 270
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-20_001940.1 |
| Exons | 5 |
| Model size | 1354 |
| Cds size | 1101 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927824.8169599-UTR-E-fasciculatus_F_contig1321:13897..14150 | 1622927824.8169599-UTR-E-fasciculatus_F_contig1321:13897..14150 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1321 13898..14150 + |
| 1695995710.761229-UTR-E-fasciculatus_F_contig1321:13897..14150 | 1695995710.761229-UTR-E-fasciculatus_F_contig1321:13897..14150 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1321 13898..14150 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1321.2422.1 >prot_E-fasciculatus_F_contig1321.2422.1 ID=prot_E-fasciculatus_F_contig1321.2422.1|Name=mRNA_E-fasciculatus_F_contig1321.2422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=367bp
MPRPSGFTDAELAAAAWRRNMKNTGANAQDVEQRERSAQTERKAERKAER KAERKSERKSERKPSSSGSKKKSNRDKDGRSKRDAVARKSIRKSKSKRRE RKERAGRSRSVSMGSVDSLGRQRVRRRRRRRRHRSASAGGSGSSSPSRQR RRRRRDQGRGRPPASGRRRRSDDDDGEEMDDLEKEFGWRGAMARASRSPS ITSRSSSSSSSSGSSGGGGRGWSSASSSGGSSRRSLSSDGRVFFEDVDGE RGVEPQAAGAEDPMARVGLLGMLGSTDDVPSDPRRPDHDDRDARWRGGSR AGFPPGARTGIGTSYTARGRGARGESSSELAMERGRHRDRRERGRRGHRG GDSEEGEGEGVHGRGR* back to topmRNA from alignment at E-fasciculatus_F_contig1321:13898..18254+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1321.2422.1 ID=mRNA_E-fasciculatus_F_contig1321.2422.1|Name=mRNA_E-fasciculatus_F_contig1321.2422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4357bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1321:13898..18254+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GGACAATCCAATCTACAGCCACGCAGCTTCGGCTTGTCTAGCACGGCGCC
CAGTTCGGTGGGACCACGAGGCCGCAGGTGGCGCATAGGAGCTGAGCGTG
GCGTCTGCCGCGCAATTGGGTTGTGCTTGCAAAGAAAGGGCCCGTCCTCG
CGACGCTTTGCGGCGCTACTATCGATAGACTGTTGTCAATCTACCAATCA
GGTGTGTGCAGCACTGCAACTACGTCGCGCGTAGCGGTGGTACGTCTCTT
GCCATGCCGCGCCCTTCAGGCTTCACGGACGCTGAACTCGCAGCGGCGGC
ATGGCGGCGCAACATGAAGAACACGGGAGCCAACGCACAGGATGTCGAGG
TAATTCTTAATTTGTTGTTCAGCACGGGACTTACTCAATGATGTACCTAC
TGAAGGTAATACCCGTAGACCGGAGACCACTTCCGGGCACTACAGGCAGT
ACTCAGCAGTACATACATGTGTGCTGCTCTGTGTGTGTTTACGCCCCACC
CATGTATTCTGACGCCGTTGTGTTCCTTCGGTGTGTGTTTGGTGCATTAG
CCAATGTCGCACAGGAGGAAGGTCAATAGACTATTGTATGGAATTATTTT
TTCCGCTAACCTTGATACTCGGAGTACTCTCCCTTTCCGTGAGTGTTGCA
CTACAGTAGTACAGCAATACTGCTGCTGTACTGCTGTACAGATGCATACA
AGTAGCGACGTTGGTTTTTCGCCAATTTTGCAGTGTTATCTACTGTACCA
CTCCGGAAGGGTTCCAACCCACAGCCTGAGGTTCACGAGGTGCACAACTG
AATAATCGGGACTGGCACTTAGTTTAGCTTAGGGCGGAAGGGATACACTG
CTGTAGCCGGCTCCTGGTCCTCTTTGTGTCATATCCTTACGTCCTCATTC
GTGTGCTTTTATTATTAGCATCGACCGCGCTAACCGGCTGACCAATGAAA
AGACGTCAGTCTCATTCGTGTGCGTGTGTGTGTGGCTTCGTTTTCAGCAG
CGAGAGCGGAGCGCTCAAACAGAGCGCAAAGCGGAGCGCAAAGCGGAGCG
CAAAGCGGAGCGCAAATCAGAGCGCAAGTCGGAGCGCAAACCTTCTTCCT
CCGGAAGCAAGAAAAAGAGCAACAGAGACAAGGACGGCAGGAGCAAGCGG
GACGCCGTGGCTAGGAAATCGATCAGAAAAAGCAAGTCCAAGCGGCGAGA
GCGCAAGGAGCGCGCGGGCAGAAGCCGCAGCGTCAGCATGGGGTGCGTGC
ATCGATGTGTTTGTTTGTTTTTTCACGGCGTGTGCGTTTTTCCATAAGGG
GCACGGGATGAGAAGGAGGACCAAAAGCCCCCCCAGTACTACGGTGGGGC
CTTTGCTGCGGGGGCGGGGGTACTCTTATGTTTTGCATGCCTTCGCCGTT
AAACCATTCACCACGCGTCCTCGAGAGGACGGAGCATTGTTCTCATCGCT
GGAGGGCGGAGGTATACTCATAGTCGTGCATGCCGTAGTCGTTGGACCGT
TGACCTCGGTGGTGGGTACTGGGGGGGGGGGGTACTCGATGCCTCACGCT
TCTTCCCGTGTCCTCGTTCGCCCAGCACGTTCACGGCACGCTCCCGTTCC
GTTCAAAGTGATCCAAGCAAAAGGTTGATTGTTTTGCCAAGCCCATCTAC
TTTACATCGAGTACCCAAATGCGCCTCCACCCACAGTTGCTTGTTTCGAC
TCGCTACATTACACCCTGCGCCTGAAGCTGTGTCGGTCCACTTCGCAGCA
GGGGCGGTGCGCTGTACGTCGGCGACCCTCACGTACCCCCGCCAAACATC
GACGATACAACACCGTCATTCCTTAGTACCGTCATTCCTTAGTACAACCA
CAACAAGAACGACCTTCCTGACGTTCACAACGACATCTACCCACCCCCCG
CGTCTTACTAGGAAAAACAAATATACACACAGAAATACTACCCGTTCGAG
GTATAACCACAACCACAATGCTGGGCTGTTTTGTCATTCCGCACAGAAGC
GTCGACTCCCTCGGGCGGCAGCGCGTGAGGCGCCGCCGCCGCCGCCGCCG
CCATCGTTCCGCATCAGCCGGCGGTAGCGGTAGCAGCAGCCCTAGCCGAC
AACGACGCAGAAGAAGGCGCGACCAAGGAAGGGGCCGCCCACCCGCCTCC
GGCAGGAGAAGGCGATCCGACGACGATGATGGCGAGGAGATGGACGACTT
GGAGAAGGAGTTTGGTTGGAGGGGGGCGATGGCGAGGGCGTCAAGGAGCC
CTAGCATCACCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGCGGTAGCAGC
GGCGGGGGGGGGAGAGGCTGGAGCAGCGCTAGCAGCAGCGGCGGTAGCAG
CAGGAGAAGCTTGAGCAGCGACGGTCGGGTGAGTTTTTTTTTTTTACTGC
TGTAGCGACGCTGTCGCGTGGCAGCGTCGTTGAAAGTACCGTACTCTGGG
GAAGCGCGTAGTATCGGCATTTCTTTCTTCTTCCGCTGAACGCGCCGAAA
AAAGTTAGTTGTGTCACGATCGATCGCCAACCCCGCGGATCCGAAGAAGC
GATCTTGATCTTGAGGTCACTCCACTGAAGCCGGTGTGTCGGTCGCGCGA
TCGGCAGGCATTCCTCGGTGATAATCCATAAGGAAAGGATTGTAGACATA
ATTTTTGCTGTGTCCTGACCCTCTCTTGCACCCTAGCCGCCGCCGCTGTT
GAAATACTTGTATCGTGTAGTAAGAGGCGACCCGAATTGCGATTGATTCC
TGTGGTCCCGCAACCGTATCCTGTAGGTTTTTTTCGAGGACGTCGACGGG
GAAAGAGGTGTGGAGCCACAAGCCGCCGGGGCCGAGGATCCCATGGCTAG
GGTGGGGCTCCTCGGGATGCTCGGGTCAACAGACGATGTCCCTTCAGACC
CTCGAAGGTACCTATCTATCTTCCTGCGGTGCCCGCTTTTAAAAAAGTGA
AAACGTTTGCACTCACTATAACTGGAGGATGGTTTTGTTTTGGATGCTTG
AATCGGGGCAATGACTATGAAGATGGTGGTTGTATTCTAACTTATCATAT
TTTCCTCGAGTATTGCGTGCCGACGACTATGTGGTTCTGCGCCGGTGTGA
ACAGCAGTAGGGAGAGAAGGAAGTACTCATGCTGCATGTCGGCCATTACG
GAACATTTTGATGTCGAAACAACAAGAGAGGCCATGGTGTTTAGGGACGG
TGACATCGGAGACTGTGGAGTCGACCGCCATTATGGCGATGGGTGGCGAC
GGTAATGGTTGGGGGGAAGAGTACTGGTGATGGCCATATGGCCATGATGA
CTGGGAAGTGCGAGTAGGTACTGCTGTCGCACGCAGACAAATCACGGTTG
TGAAAGTTCAACGATCAACTCACGACTTCCCTGTGCGTTTTCGACCGTCG
CACGAAACACCCCCCCTTGTCCGCTTGGTGATGTGCCAGCCTGGTCCGGT
GATAAACCAGCGTGCTCCGTCCCAGCGTTGTAGGGATGCGAGGTCAATGG
TGTAACGACTACGGCATGCACGGCTATGAGAACACCTCCCCCGTCCCCAT
CATATCATTGCATTGTTTCCAACTCCCCGGCCTACCGTCTCGGTGTATTA
GGCGGTGCTCTAATCGCCACCCATCTTGAAATGAAAACGCGGCTTGATCA
TGATCTTTGAGATCCCGGTGGAAACCCCTTGATTTCGAGCAACGGGGTTC
GTCTACTAATAGGGCTTTTTTTTTCTTTTGTTTCCCGCAACGAAAGAAGC
GAGAGAGCGTGGCCATCATCTCACCCGTGTATGTATGCAGTCCCGTCCCT
TGGCTGGCTGTGCTACCACCACCACCACCTAGTCCCGTCCACATGGCACG
CCACACACTATTACCACTAGACTCATGCCCCCCCCCCGCCCCCCGTCACA
GCAAGTGTCTCGGTTGTGGAAAGACTTGAGACGTGGCTCCTTCTAAAAAA
TCTATGAGGACGCGTGCTCGGCGTTTTCATAAAATAACATCATCACCACC
ACCACCACCACCACCACCATTACGGCAACCTAGTGTCTGTCGGCAGTAGT
CCCCACCACCTCCCGCCCGCCGCCAACTCGCCGCCACGCTAAACCCTACA
CCCCACCCAGGCCCGACCACGACGACCGCGACGCGCGGTGGCGAGGGGGC
AGCAGGGCGGGCTTCCCCCCGGGAGCGCGAACCGGCATCGGAACCTCCTA
CACGGCCAGAGGCAGGGGGGCGCGCGGCGAATCGTCGAGCGAGCTGGCGA
TGGAGAGAGGTCGCCATCGCGACCGGCGGGAGCGAGGGCGGCGGGGGCAC
CGTGGCGGAGACTCGGAGGAGGGGGAGGGGGAGGGGGTACATGGCCGAGG
GAGGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1321:13898..18254+ >mRNA_E-fasciculatus_F_contig1321.2422.1 ID=mRNA_E-fasciculatus_F_contig1321.2422.1|Name=mRNA_E-fasciculatus_F_contig1321.2422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2202bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1321:13898..18254+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCCGCGCCCTTCAGGCTTCACGGACGCTGAACTCGCAGCGGCGGCATG GCGGCGCAACATGAAGAACACGGGAGCCAACGCACAGGATGTCGAGATGC CGCGCCCTTCAGGCTTCACGGACGCTGAACTCGCAGCGGCGGCATGGCGG CGCAACATGAAGAACACGGGAGCCAACGCACAGGATGTCGAGCAGCGAGA GCGGAGCGCTCAAACAGAGCGCAAAGCGGAGCGCAAAGCGGAGCGCAAAG CGGAGCGCAAATCAGAGCGCAAGTCGGAGCGCAAACCTTCTTCCTCCGGA AGCAAGAAAAAGAGCAACAGAGACAAGGACGGCAGGAGCAAGCGGGACGC CGTGGCTAGGAAATCGATCAGAAAAAGCAAGTCCAAGCGGCGAGAGCGCA AGGAGCGCGCGGGCAGAAGCCGCAGCGTCAGCATGGGCAGCGAGAGCGGA GCGCTCAAACAGAGCGCAAAGCGGAGCGCAAAGCGGAGCGCAAAGCGGAG CGCAAATCAGAGCGCAAGTCGGAGCGCAAACCTTCTTCCTCCGGAAGCAA GAAAAAGAGCAACAGAGACAAGGACGGCAGGAGCAAGCGGGACGCCGTGG CTAGGAAATCGATCAGAAAAAGCAAGTCCAAGCGGCGAGAGCGCAAGGAG CGCGCGGGCAGAAGCCGCAGCGTCAGCATGGGAAGCGTCGACTCCCTCGG GCGGCAGCGCGTGAGGCGCCGCCGCCGCCGCCGCCGCCATCGTTCCGCAT CAGCCGGCGGTAGCGGTAGCAGCAGCCCTAGCCGACAACGACGCAGAAGA AGGCGCGACCAAGGAAGGGGCCGCCCACCCGCCTCCGGCAGGAGAAGGCG ATCCGACGACGATGATGGCGAGGAGATGGACGACTTGGAGAAGGAGTTTG GTTGGAGGGGGGCGATGGCGAGGGCGTCAAGGAGCCCTAGCATCACCAGC AGGAGCAGCAGCAGCAGCAGCAGCAGCGGTAGCAGCGGCGGGGGGGGGAG AGGCTGGAGCAGCGCTAGCAGCAGCGGCGGTAGCAGCAGGAGAAGCTTGA GCAGCGACGGTCGGAAGCGTCGACTCCCTCGGGCGGCAGCGCGTGAGGCG CCGCCGCCGCCGCCGCCGCCATCGTTCCGCATCAGCCGGCGGTAGCGGTA GCAGCAGCCCTAGCCGACAACGACGCAGAAGAAGGCGCGACCAAGGAAGG GGCCGCCCACCCGCCTCCGGCAGGAGAAGGCGATCCGACGACGATGATGG CGAGGAGATGGACGACTTGGAGAAGGAGTTTGGTTGGAGGGGGGCGATGG CGAGGGCGTCAAGGAGCCCTAGCATCACCAGCAGGAGCAGCAGCAGCAGC AGCAGCAGCGGTAGCAGCGGCGGGGGGGGGAGAGGCTGGAGCAGCGCTAG CAGCAGCGGCGGTAGCAGCAGGAGAAGCTTGAGCAGCGACGGTCGGGTTT TTTTCGAGGACGTCGACGGGGAAAGAGGTGTGGAGCCACAAGCCGCCGGG GCCGAGGATCCCATGGCTAGGGTGGGGCTCCTCGGGATGCTCGGGTCAAC AGACGATGTCCCTTCAGACCCTCGAAGGTTTTTTTCGAGGACGTCGACGG GGAAAGAGGTGTGGAGCCACAAGCCGCCGGGGCCGAGGATCCCATGGCTA GGGTGGGGCTCCTCGGGATGCTCGGGTCAACAGACGATGTCCCTTCAGAC CCTCGAAGGCCCGACCACGACGACCGCGACGCGCGGTGGCGAGGGGGCAG CAGGGCGGGCTTCCCCCCGGGAGCGCGAACCGGCATCGGAACCTCCTACA CGGCCAGAGGCAGGGGGGCGCGCGGCGAATCGTCGAGCGAGCTGGCGATG GAGAGAGGTCGCCATCGCGACCGGCGGGAGCGAGGGCGGCGGGGGCACCG TGGCGGAGACTCGGAGGAGGGGGAGGGGGAGGGGGTACATGGCCGAGGGA GGTGAGCCCGACCACGACGACCGCGACGCGCGGTGGCGAGGGGGCAGCAG GGCGGGCTTCCCCCCGGGAGCGCGAACCGGCATCGGAACCTCCTACACGG CCAGAGGCAGGGGGGCGCGCGGCGAATCGTCGAGCGAGCTGGCGATGGAG AGAGGTCGCCATCGCGACCGGCGGGAGCGAGGGCGGCGGGGGCACCGTGG CGGAGACTCGGAGGAGGGGGAGGGGGAGGGGGTACATGGCCGAGGGAGGT GA back to top
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