prot_E-fasciculatus_F_contig13208.2418.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig13208.2418.1
Unique Nameprot_E-fasciculatus_F_contig13208.2418.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length211
Homology
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.470e-81
Identity = 137/173 (79.19%), Postives = 143/173 (82.66%), Query Frame = 0
Query:    3 HPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQARRG 175
            HP+LLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALG +                 +++LI            QGVVEYVDVNEENNCLVGLADGDLT+NHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQARRG
Sbjct:  619 HPFLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGVL----------------SLQDLI-----------KQGVVEYVDVNEENNCLVGLADGDLTINHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQARRG 764          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.640e-62
Identity = 111/169 (65.68%), Postives = 127/169 (75.15%), Query Frame = 0
Query:    4 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            P L   ++RFLRR+GMVGEFVSVYLH V+RAVYIASDGGRVCRPLLVVENG+T LT+ H+ Q+A G                +R +K+L+ +           GVVEYVDVNEENNCL+ L+D DLT  HTHLE+DPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:  592 PELFVRRLRFLRRQGMVGEFVSVYLHDVQRAVYIASDGGRVCRPLLVVENGQTLLTERHMAQLASG----------------VRGLKDLLRI-----------GVVEYVDVNEENNCLIALSDADLTERHTHLEVDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 733          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A7S4DBE3_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK)

HSP 1 Score: 195 bits (495), Expect = 7.260e-57
Identity = 98/172 (56.98%), Postives = 115/172 (66.86%), Query Frame = 0
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            +R P     + RFLRR+G+V EFVSVYLH+ +RAVY+A+DGGR+CRPLLVVE GR  LT  H++Q+  G                           L S       GVVEYVDVNEENNC + L + +LT  HTH+EIDPLTLLGVVAGL+PYPHHNQSPRNTYQCAMGKQA
Sbjct:  175 HRRPREFVRRFRFLRRQGLVTEFVSVYLHAPQRAVYLAADGGRLCRPLLVVEGGRPLLTALHMEQLRAG---------------------------LTSLGALLNDGVVEYVDVNEENNCYIALKEEELTPQHTHVEIDPLTLLGVVAGLVPYPHHNQSPRNTYQCAMGKQA 319          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.620e-56
Identity = 101/169 (59.76%), Postives = 121/169 (71.60%), Query Frame = 0
Query:    4 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            P  LA ++RFLRR+G VGEFVS+YLHS +RAVYIASDGGRVCRPLLVVE GR RLT  H+  +++G                +  + +L+             GVVEYVDVNEENNC + L + +LT +HTHLEIDPLT++GVVAGLIP+PHHNQSPRNTYQCAMGKQA
Sbjct:  558 PQDLARRLRFLRRRGCVGEFVSIYLHSGKRAVYIASDGGRVCRPLLVVEGGRLRLTTNHIRHLSMG----------------LGTLPDLLA-----------DGVVEYVDVNEENNCFIALKEEELTPSHTHLEIDPLTIMGVVAGLIPFPHHNQSPRNTYQCAMGKQA 699          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A7S2WH87_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH87_9STRA)

HSP 1 Score: 197 bits (502), Expect = 8.170e-55
Identity = 98/169 (57.99%), Postives = 122/169 (72.19%), Query Frame = 0
Query:    4 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            P L  + +R LRR+G VGEFVSVYLHSV+RAVY+ASDGGRVCRPLLVV+NG+  L + H+ Q+A G                +R +K+L+            + +VEY+DVNEENNCL+ L+D  LT  HTH+EIDPLT++GVV+GLIP+PHHNQSPRNTYQCAMGKQA
Sbjct:  555 PRLFVDMLRALRRRGRVGEFVSVYLHSVQRAVYVASDGGRVCRPLLVVKNGQPMLRQIHMQQLAAG----------------LRTLKDLM-----------REEIVEYIDVNEENNCLIALSDRMLTPEHTHMEIDPLTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQA 696          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A7S2DCI5_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCI5_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.900e-53
Identity = 95/169 (56.21%), Postives = 114/169 (67.46%), Query Frame = 0
Query:    4 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            P       R LRRKG+VGEFVSVYLHSV  A+Y+A+DGGRVCRPLLV   G+ RLT+ H+ Q+ LG                           L S +    +G+VEY+DVNEENNC+V L++ +LT  HTHLEIDPLTL+GVV+GLIP+PHHNQSPRNTY CAMGKQA
Sbjct:  426 PKRFVKYFRTLRRKGLVGEFVSVYLHSVHHAIYVATDGGRVCRPLLVCTKGKPRLTQVHMSQLGLG---------------------------LRSLTDLMKEGIVEYMDVNEENNCMVALSEKELTPEHTHLEIDPLTLMGVVSGLIPFPHHNQSPRNTYTCAMGKQA 567          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 191 bits (484), Expect = 2.210e-52
Identity = 99/169 (58.58%), Postives = 113/169 (66.86%), Query Frame = 0
Query:    4 PYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            P      +R LRRKG+V EFVSV LH V+RA+YIA+DGGRVCRPLLV E G  RLT   + Q++ G +  +           IRC                  GVVEYVDVNEENNCL+ LA   LT+ HTH+EIDPLT+LGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:  590 PLRFVRLLRLLRRKGLVAEFVSVCLHEVQRAIYIATDGGRVCRPLLVCEKGVPRLTNMMMRQLSSGLLTLAEL---------IRC------------------GVVEYVDVNEENNCLIALAQTQLTVKHTHMEIDPLTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 731          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A813AD60_9DINO (DNA-directed RNA polymerase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AD60_9DINO)

HSP 1 Score: 177 bits (449), Expect = 6.860e-52
Identity = 89/174 (51.15%), Postives = 116/174 (66.67%), Query Frame = 0
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENG--RTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            +R P  LA  +R LRR G++GEFVS+++H V +AV +A DGGR+CRPL++V+     +R+T  H+D++  G   F+  SL+S                         +  +EYVDVNEENNCL+ L + D+  N TH+EIDPLT+LGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:   72 HREPNTLAANMRLLRRNGLIGEFVSIFVHDVHKAVNVACDGGRICRPLIIVDQATQESRITADHIDEITNGTRDFN--SLLS-------------------------ESCIEYVDVNEENNCLIALREEDIGPNTTHVEIDPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQA 218          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 188 bits (477), Expect = 1.990e-51
Identity = 97/172 (56.40%), Postives = 116/172 (67.44%), Query Frame = 0
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            +R PY  A   R  RR G++GEFVSVY+H   RAV IASDGGR+CRP++VVE G+ RLT  H+  +A G V F+  SL+S                          GV+EY+DVNEENNCL+ L + D+T   THLEIDP+T+LGVVAGLIPYPHHNQSPRNTYQCAMGKQA
Sbjct:  846 HRRPYDFAKAFRIFRRAGILGEFVSVYVHDGLRAVNIASDGGRICRPVVVVEQGQPRLTARHMRDLAAGLVDFN--SLLST-------------------------GVLEYLDVNEENNCLIALREADITRATTHLEIDPVTILGVVAGLIPYPHHNQSPRNTYQCAMGKQA 990          
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 186 bits (472), Expect = 5.170e-51
Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = 0
Query:    1 YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLVVENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSFSRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGLIPYPHHNQSPRNTYQCAMGKQA 172
            +  P  L  +IR LRR+G +GEFVSVYL+ +++ VYIASDGGRVCRPLL+++ G+ +L + H++Q  LG                         V LP       QGV+EYVDVNEENNC + L + ++TL HTH+EIDP T+LG+VAGL+PYPHHNQSPRNTYQCAMGKQA
Sbjct:  340 HERPNELVERIRSLRRRGHIGEFVSVYLNVIQKGVYIASDGGRVCRPLLILDQGKLKLEQKHIEQ--LGKT-----------------------VSLPDLLA---QGVMEYVDVNEENNCFIALKESEITLEHTHMEIDPSTILGIVAGLVPYPHHNQSPRNTYQCAMGKQA 483          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13208.2418.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE1.470e-8179.19DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA1.640e-6265.68DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4DBE3_HETAK7.260e-5756.98DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A6U4JF41_9STRA3.620e-5659.76DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S2WH87_9STRA8.170e-5557.99DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A7S2DCI5_9STRA2.900e-5356.21DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
I2CNY0_NANGC2.210e-5258.58DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A813AD60_9DINO6.860e-5251.15DNA-directed RNA polymerase n=1 Tax=Symbiodinium s... [more]
A0A5A8CMB6_CAFRO1.990e-5156.40DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A482SPL4_9ARCH5.170e-5153.49DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 2..52
e-value: 1.4E-16
score: 60.5
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 146..194
e-value: 3.9E-12
score: 48.1
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 106..140
e-value: 1.1E-5
score: 25.9
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..172
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 3..172
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13208contigE-fasciculatus_F_contig13208:883..2375 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13208.2418.1mRNA_E-fasciculatus_F_contig13208.2418.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig13208 883..2376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig13208.2418.1 ID=prot_E-fasciculatus_F_contig13208.2418.1|Name=mRNA_E-fasciculatus_F_contig13208.2418.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=211bp
YRHPYLLANKIRFLRRKGMVGEFVSVYLHSVRRAVYIASDGGRVCRPLLV
VENGRTRLTKTHLDQMALGAVLFSRCSLISVEYVRIRCIKNLICVFLPSF
SRAPPQGVVEYVDVNEENNCLVGLADGDLTLNHTHLEIDPLTLLGVVAGL
IPYPHHNQSPRNTYQCAMGKQARRGEGGGHRGSYGRPAVRPGAPPEAHGH
HPGAGPRTLRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015712DNA-dir_RNA_pol_su2
IPR007647RNA_pol_Rpb2_5
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007646RNA_pol_Rpb2_4