mRNA_E-fasciculatus_F_contig13206.2417.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13206.2417.1
Unique NamemRNA_E-fasciculatus_F_contig13206.2417.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13206.2417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13206contigE-fasciculatus_F_contig13206:1522..2051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13206.2417.1prot_E-fasciculatus_F_contig13206.2417.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13206 1663..2034 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.3567562-UTR-E-fasciculatus_F_contig13206:1521..16621622927824.3567562-UTR-E-fasciculatus_F_contig13206:1521..1662Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13206 1522..1662 +
1695995710.4946291-UTR-E-fasciculatus_F_contig13206:1521..16621695995710.4946291-UTR-E-fasciculatus_F_contig13206:1521..1662Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13206 1522..1662 +
1622927824.3825843-UTR-E-fasciculatus_F_contig13206:2034..20511622927824.3825843-UTR-E-fasciculatus_F_contig13206:2034..2051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13206 2035..2051 +
1695995710.5142314-UTR-E-fasciculatus_F_contig13206:2034..20511695995710.5142314-UTR-E-fasciculatus_F_contig13206:2034..2051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13206 2035..2051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.3704164-CDS-E-fasciculatus_F_contig13206:1662..20341622927824.3704164-CDS-E-fasciculatus_F_contig13206:1662..2034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13206 1663..2034 +
1695995710.504614-CDS-E-fasciculatus_F_contig13206:1662..20341695995710.504614-CDS-E-fasciculatus_F_contig13206:1662..2034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13206 1663..2034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13206.2417.1

>prot_E-fasciculatus_F_contig13206.2417.1 ID=prot_E-fasciculatus_F_contig13206.2417.1|Name=mRNA_E-fasciculatus_F_contig13206.2417.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
MSRPIHERRAALCRGARRVGAQNWTGFTTLAHSQTLPVPQRWYHPLAMQY
TRGSLASRAFWKEGQHQSFTNYEGTFAGRPFYRPWSCHEPWMRRYDIALH
VLSVGKLNVPSREELEWLSYDNS*
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mRNA from alignment at E-fasciculatus_F_contig13206:1522..2051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13206.2417.1 ID=mRNA_E-fasciculatus_F_contig13206.2417.1|Name=mRNA_E-fasciculatus_F_contig13206.2417.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=530bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13206:1522..2051+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGGGTGGCTGGGGGAGTGCATTACGCAGGACATGACTGATTCCCCC
ACAGGTTTTCCTCTACTTGTGAATGTCACTGCTGTATGGCGGCCACTAGC
GGTAAACCTTCCAGTCCGGTAGTGTGCGAAACAAAAAAGTAATGTCTCGG
CCAATACACGAGAGACGTGCAGCGCTTTGCCGAGGGGCACGAAGAGTAGG
AGCGCAAAATTGGACCGGCTTCACTACGCTTGCCCACAGTCAAACGTTAC
CGGTACCGCAACGTTGGTATCATCCCCTGGCAATGCAATATACTCGCGGT
TCACTCGCTTCCAGGGCGTTTTGGAAGGAAGGGCAACATCAATCATTCAC
GAATTACGAGGGAACCTTCGCGGGACGTCCTTTTTACCGGCCGTGGTCCT
GCCACGAACCGTGGATGCGTAGATATGACATTGCTCTCCATGTCTTGTCC
GTGGGCAAGTTGAATGTGCCGTCCCGTGAAGAGCTGGAGTGGCTGTCTTA
CGACAATTCATAGCGAGGGTAGCCTTTCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13206:1522..2051+

>mRNA_E-fasciculatus_F_contig13206.2417.1 ID=mRNA_E-fasciculatus_F_contig13206.2417.1|Name=mRNA_E-fasciculatus_F_contig13206.2417.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13206:1522..2051+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTCGGCCAATACACGAGAGACGTGCAGCGCTTTGCCGAGGGGCACG
AAGAGTAGGAGCGCAAAATTGGACCGGCTTCACTACGCTTGCCCACAGTC
AAACGTTACCGGTACCGCAACGTTGGTATCATCCCCTGGCAATGCAATAT
ACTCGCGGTTCACTCGCTTCCAGGGCGTTTTGGAAGGAAGGGCAACATCA
ATCATTCACGAATTACGAGGGAACCTTCGCGGGACGTCCTTTTTACCGGC
CGTGGTCCTGCCACGAACCGTGGATGCGTAGATATGACATTGCTCTCCAT
GTCTTGTCCGTGGGCAAGTTGAATGTGCCGTCCCGTGAAGAGCTGGAGTG
GCTGTCTTACGACAATTCATAGATGTCTCGGCCAATACACGAGAGACGTG
CAGCGCTTTGCCGAGGGGCACGAAGAGTAGGAGCGCAAAATTGGACCGGC
TTCACTACGCTTGCCCACAGTCAAACGTTACCGGTACCGCAACGTTGGTA
TCATCCCCTGGCAATGCAATATACTCGCGGTTCACTCGCTTCCAGGGCGT
TTTGGAAGGAAGGGCAACATCAATCATTCACGAATTACGAGGGAACCTTC
GCGGGACGTCCTTTTTACCGGCCGTGGTCCTGCCACGAACCGTGGATGCG
TAGATATGACATTGCTCTCCATGTCTTGTCCGTGGGCAAGTTGAATGTGC
CGTCCCGTGAAGAGCTGGAGTGGCTGTCTTACGACAATTCATAG
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