mRNA_E-fasciculatus_F_contig13203.2416.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13203.2416.1
Unique NamemRNA_E-fasciculatus_F_contig13203.2416.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13203.2416.1 vs. uniprot
Match: A0A6H5JZ55_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ55_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 3.080e-139
Identity = 217/260 (83.46%), Postives = 226/260 (86.92%), Query Frame = 1 
Query:    1 GALAVGAVAASVVSPYSSYDGGGNGMVVWREGQQEMSAKVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAIVLDVVNDNLVTDSIIGTTGSIGLKTAATGESKWWNVSRGGTIQAIIELVTPDSAGGGSTGTHPNAAYSRSXXXXXXXXXXXXXXXXXXXXXXYGGGRVATINPSPHVAVAHATPVAAAGAPGNAYGGATPVAAAMSDPPPSYE 780
            GALAVGAVAASVVSPY+SYDGG NGMVVWREGQQEMSA VNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLA+VLDVVNDNLV DSIIGTTGSIGL+TAATGESKWWN+S GGTIQAIIEL+TP+S GGG TGTHPN AYSR+                      YGGGRVAT+NP PHVAVAHATPVAA GAPGNAYGGA P A AMS+PPPSYE
Sbjct:  146 GALAVGAVAASVVSPYTSYDGGRNGMVVWREGQQEMSAPVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAVVLDVVNDNLVADSIIGTTGSIGLQTAATGESKWWNISSGGTIQAIIELITPESGGGGGTGTHPNTAYSRNSAAAADPAVASSRPSGGS----YGGGRVATVNPPPHVAVAHATPVAA-GAPGNAYGGAAPGAMAMSNPPPSYE 400
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BLAST of mRNA_E-fasciculatus_F_contig13203.2416.1 vs. uniprot
Match: D8LMN7_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN7_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 1.680e-138
Identity = 223/262 (85.11%), Postives = 231/262 (88.17%), Query Frame = 1 
Query:    1 GALAVGAVAASVVSPYSSYDGGGNGMVVWREGQQEMSAKVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKSVFTFYVPATVTLDTLAIVLDVVNDNLVTDSIIGTTGSIGLKTAATGESKWWNVSRGGTIQAIIELVTPDSAGGGSTGTHPNAAYSRSXXXXXXXXXXXXXXXXXXXXXXYGGGRVATINPSPHVAVAHATPVAAAGAPGNAYGGATPVAAAMSDPPPSYEVS 786
            GALAVGAVAASVVSPY+SYDGG NGMVVWREGQQEMSA VNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMA+SVFTFYVPATVTL+TLA+VLDVVNDNLV DSIIGTTGSIGLKTAATGESKWWNVS GGT+QAIIEL+TP+S G     THPN AYSRSXXXXXX                Y GGRVAT+NPSPHVAVAHATPVAA GAPGNAYGGATPVA AMSDPPPSYE S
Sbjct:  128 GALAVGAVAASVVSPYTSYDGGRNGMVVWREGQQEMSAPVNMVTVRVCQAQNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMARSVFTFYVPATVTLETLAVVLDVVNDNLVADSIIGTTGSIGLKTAATGESKWWNVSSGGTLQAIIELITPESGGXXXXXTHPNIAYSRSXXXXXXPAVASSRPSGGS----YNGGRVATVNPSPHVAVAHATPVAA-GAPGNAYGGATPVATAMSDPPPSYEQS 384
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13203.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ55_9PHAE3.080e-13983.46C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LMN7_ECTSI1.680e-13885.11C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13203contigE-fasciculatus_F_contig13203:393..3718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size807
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13203.2416.1prot_E-fasciculatus_F_contig13203.2416.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13203 393..3718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.2802887-CDS-E-fasciculatus_F_contig13203:392..7731622927824.2802887-CDS-E-fasciculatus_F_contig13203:392..773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 393..773 -
1695995710.4524455-CDS-E-fasciculatus_F_contig13203:392..7731695995710.4524455-CDS-E-fasciculatus_F_contig13203:392..773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 393..773 -
1622927824.2948847-CDS-E-fasciculatus_F_contig13203:1372..15701622927824.2948847-CDS-E-fasciculatus_F_contig13203:1372..1570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 1373..1570 -
1695995710.4604864-CDS-E-fasciculatus_F_contig13203:1372..15701695995710.4604864-CDS-E-fasciculatus_F_contig13203:1372..1570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 1373..1570 -
1622927824.3099966-CDS-E-fasciculatus_F_contig13203:2599..26951622927824.3099966-CDS-E-fasciculatus_F_contig13203:2599..2695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 2600..2695 -
1695995710.4684205-CDS-E-fasciculatus_F_contig13203:2599..26951695995710.4684205-CDS-E-fasciculatus_F_contig13203:2599..2695Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 2600..2695 -
1622927824.32176-CDS-E-fasciculatus_F_contig13203:3586..37181622927824.32176-CDS-E-fasciculatus_F_contig13203:3586..3718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 3587..3718 -
1695995710.481721-CDS-E-fasciculatus_F_contig13203:3586..37181695995710.481721-CDS-E-fasciculatus_F_contig13203:3586..3718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13203 3587..3718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13203.2416.1

>prot_E-fasciculatus_F_contig13203.2416.1 ID=prot_E-fasciculatus_F_contig13203.2416.1|Name=mRNA_E-fasciculatus_F_contig13203.2416.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=269bp
GALAVGAVAASVVSPYSSYDGGGNGMVVWREGQQEMSAKVNMVTVRVCQA
QNLKKVQMIGKQDPYVRAKLLFNGHKIGECRSSTHTDGGRNPTWQNMAKS
VFTFYVPATVTLDTLAIVLDVVNDNLVTDSIIGTTGSIGLKTAATGESKW
WNVSRGGTIQAIIELVTPDSAGGGSTGTHPNAAYSRSSAAAAAAAPAAAS
SRPSGGGGSYGGGRVATINPSPHVAVAHATPVAAAGAPGNAYGGATPVAA
AMSDPPPSYEVSARACALS
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mRNA from alignment at E-fasciculatus_F_contig13203:393..3718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13203.2416.1 ID=mRNA_E-fasciculatus_F_contig13203.2416.1|Name=mRNA_E-fasciculatus_F_contig13203.2416.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13203:393..3718- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGCGCTGGCGGTGGGCGCGGTGGCGGCCTCGGTGGTCTCGCCGTACTC
GAGCTACGACGGGGGGGGGAACGGCATGGTGGTGTGGCGGGAAGGGCAGC
AGGAGATGTCGGCGAAAGTCAACATGGTGACGGTGAGGAGGAAAAACGGT
CTTTATTTTGTTGTTTTTTGCTTCAGGTTCCCTCCTGCGTAGTAGTTTTT
TGTTTGGTTATTTTGTCATGTGTCCTATTGTAGTCTGGTACGGGGCGTAT
GGCTGCTGAAAGCAAAAAAGTATTTTGCATCGGAGGCGATTATTGCGACG
CGTTGTTTTGTTTTTGTTGAATCTGTGCTGCTTTTGTGGTGGGCCGAAGC
ACCTTCGCGTGGGATGATTTGACCCGCGTAGAGCGATTTTCCGTTGAGGT
ACGAAGACAGCTAGCTGGTGGCCGAGCCTTCTTCCATTGAAGAGACGTAT
GAGCCCCTAGGTAGGGGCTGTAGTGCACTGTCGTGTGTGCGGCACCAGTT
GCTGTGTCTCTGCTTGGCCTATAGGTCCCGCGTTTTGGCTTGATGGGCGT
TTGCTGGTGAACGATATTTTCCCCGTGTGTTGGAACAATTCGGCGATTTC
GGTCGACTTTCGGTTACAGGAAGTGCCTCCCGTTCAGAGCGGCTGAACGG
CACTGTGGCCATGTCCAAGGCTGCTTGCGCGCCTCTGACACACGCTCTAC
ATACATGGACACCGGTATTTTGCTTCGGTTTGTTGGTTCTTCACACATCC
CCAAACAACATGGTGTCCTACCTGGGGTGCTGCCGTGTGCACGTATCCAC
CTGATTCTTGTACACGACCGTTAACATTTTCCACCTGCATCTCGAGTTTT
GTCCTATCCCACTACCTTATTCCGCCATGGGCCGTTATTCTCTATGGTAC
GGTAAAAACATACCATGTTCTACAGTAGTGCAAAAAATGGCTGTTGTACG
GTCGTTGCACGGTTCGGGCACACGAACTTTATAACACCAGCAATGGGGCG
CGCCCTTCCTTCCGCTTTCGCAGGTTCGTGTCTGTCAGGCGCAGAACCTC
AAGAAGGTCCAGATGATCGGGAAGCAAGACCCCTACGTCCGCGCAAAGCT
GTTGTTCAACGGCCACAAGGTGGGTAAAATTTTGGGGAGCGCGTTCGAAA
CTCATTTCGTATTGTTCGTGCTTGGGTTTCTTCCCAAGTTTTGTGGTGAT
ACATTACTTGGATTGACTTCCATTATTCCTTCGGTTTTGGTCTCGTGTGA
CGACCGTGGTCGGCTAGCCTTCAAGTGGCGATACGTCATGCCATGCTCAA
CGAATTTGTGTCTGACCGACTGGCCGTGGACAACAACCACCGCCACCCAA
GGATCTGCGGTCATCACAGAAACCATTTCGCCGCAAGGTTTTTTACCAAT
CAGAAATGTTCCGTGTACCGTACCACCTTTCCGTTGGGGTGGGCACGCTC
CCAAGGGAGGAGAGGAGGAGGGGTCACAACAGCATGGCATCCCGGCGGTG
CCTTGCACCTCCGTGGAGACGTAAGCGGAGTCAATACGACATATCCATGG
TGTGGGTTCTGTGCGGACCCACCGTTTCGCGTTGCGCAGTTTTTTTCGTT
CAGTGTAGAGGTAGAGTTTTTATCGCGTTGTTTTCGAGAGGCGATTTTTT
TTGTTGACGACATTCGAGAGAGCGGCTGCTTGTGCCGCCATCGTACTTGC
CGGTGTTGCCCTGCGTCCCACTCGGACTCTCTGACTGGCCACAGAAGCCC
CCTATCGGCTAGAATCTTGTCGACTCGACTCGCATGCCTTCAAGCGCAAC
ACGGTGGGAACTAATTAATTGCTCTTGACCCCGCCGCCCTTGCTGTCTGC
TGCACACGGGGACTCTATTACTCGATGCACGAAATGTTTCGGTTCTGTGA
AAGGTGTACCCTTCTTTGGGTAGTTGGCTATTATATTGCACGAAATGTTT
CGGTTCTGTGAAAGGTGTACCCTTCTTTGGGTAGTTGGCTATTATATTAA
TAGTGACCACGGAAGACGTCCGCGTCAGTCGGGCCAACACGGACATTAGA
AGGTACAGTACTGAGCGAAGACCCCGGAACGGTTTTTGGCGTGAAGATAT
CACCAACAACAATTTTCGTGTTGTTTCCTTCTTTGTCTTTTTTGTTAGAT
CGGCGAGTGTCGGAGCTCGACCCACACCGACGGTGGCCGGAACCCAACCT
GGCAAAACATGGCCAAGAGCGTCTTCACCTTCTACGTCCCGGCGACGGTC
ACCCTCGACACGCTGGCCATCGTGCTTGACGTGGTGAACGACAACCTGGT
CACCGACAGCATCATCGGCACGACGGGGAGCATCGGTCTCAAGACGGTAA
GGCTAAGAGCGTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCCCTCTCCCTCTCCCTCTCTCTCTCTCTATCTATCTATCTCCGC
CCCTATCTCTATCTCTAGCTCCCTCTCCCTGTCTCTCCCTCTCTCTCTCT
CGCTCGCTTTTTGCTTGTCGATCGATTTTTTTTGTTCTCCGCGACAATGC
CTCCTATTTCCTTCGCCCCCCATCTCGCGATAGTAGCTCGGAGAGTCATC
GCCCCACATTTTTCGTTCTGGAGCAGACAGCAACAACGGCCGCAGTACCA
TGTCTCTCTTTCCCGTCCTTGGGAGTAGGTCATGCATGATGCATGATTCT
CATGATGCTCATGATTCTCCTCTTGTCCTTGGCACCATTTTTTTATGCCG
AAGTAGATGTGTGCGGCACGATTATAACTCTCGTGAAACTGTCACGTATA
TACGTTGTAGCGAGAAACCGACCGCTGAAACACAACGGCAAGCCAAGAAA
CGCATACCCACCCCATGGTCAATGGTCTAGCCGCTAAGGCATGCAAGACA
TGAGTAACCCCCCCTCGCCCACCCTGCCACCGCTGGCTTGATCAGGCAGC
CACGGGGGAGTCAAAGTGGTGGAACGTATCACGCGGCGGAACCATCCAGG
CGATCATCGAGCTCGTCACCCCCGACTCTGCGGGGGGGGGAAGCACCGGG
ACGCACCCCAACGCCGCCTACTCCAGGAGCAGCGCGGCGGCGGCGGCGGC
CGCCCCAGCGGCGGCGTCCTCCCGACCAAGCGGCGGAGGCGGCAGCTACG
GCGGGGGTCGAGTCGCCACGATTAACCCGTCCCCCCACGTCGCGGTCGCT
CACGCCACCCCGGTGGCGGCGGCGGGGGCTCCGGGGAATGCGTACGGTGG
GGCCACCCCGGTGGCGGCGGCTATGTCGGACCCCCCTCCGTCCTACGAGG
TGAGCGCGCGCGCGTGCGCTCTCTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13203:393..3718-

>mRNA_E-fasciculatus_F_contig13203.2416.1 ID=mRNA_E-fasciculatus_F_contig13203.2416.1|Name=mRNA_E-fasciculatus_F_contig13203.2416.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1614bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13203:393..3718- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGCGCTGGCGGTGGGCGCGGTGGCGGCCTCGGTGGTCTCGCCGTACTC
GAGCTACGACGGGGGGGGGAACGGCATGGTGGTGTGGCGGGAAGGGCAGC
AGGAGATGTCGGCGAAAGTCAACATGGTGACGGGAGCGCTGGCGGTGGGC
GCGGTGGCGGCCTCGGTGGTCTCGCCGTACTCGAGCTACGACGGGGGGGG
GAACGGCATGGTGGTGTGGCGGGAAGGGCAGCAGGAGATGTCGGCGAAAG
TCAACATGGTGACGGTTCGTGTCTGTCAGGCGCAGAACCTCAAGAAGGTC
CAGATGATCGGGAAGCAAGACCCCTACGTCCGCGCAAAGCTGTTGTTCAA
CGGCCACAAGGTTCGTGTCTGTCAGGCGCAGAACCTCAAGAAGGTCCAGA
TGATCGGGAAGCAAGACCCCTACGTCCGCGCAAAGCTGTTGTTCAACGGC
CACAAGATCGGCGAGTGTCGGAGCTCGACCCACACCGACGGTGGCCGGAA
CCCAACCTGGCAAAACATGGCCAAGAGCGTCTTCACCTTCTACGTCCCGG
CGACGGTCACCCTCGACACGCTGGCCATCGTGCTTGACGTGGTGAACGAC
AACCTGGTCACCGACAGCATCATCGGCACGACGGGGAGCATCGGTCTCAA
GACGATCGGCGAGTGTCGGAGCTCGACCCACACCGACGGTGGCCGGAACC
CAACCTGGCAAAACATGGCCAAGAGCGTCTTCACCTTCTACGTCCCGGCG
ACGGTCACCCTCGACACGCTGGCCATCGTGCTTGACGTGGTGAACGACAA
CCTGGTCACCGACAGCATCATCGGCACGACGGGGAGCATCGGTCTCAAGA
CGGCAGCCACGGGGGAGTCAAAGTGGTGGAACGTATCACGCGGCGGAACC
ATCCAGGCGATCATCGAGCTCGTCACCCCCGACTCTGCGGGGGGGGGAAG
CACCGGGACGCACCCCAACGCCGCCTACTCCAGGAGCAGCGCGGCGGCGG
CGGCGGCCGCCCCAGCGGCGGCGTCCTCCCGACCAAGCGGCGGAGGCGGC
AGCTACGGCGGGGGTCGAGTCGCCACGATTAACCCGTCCCCCCACGTCGC
GGTCGCTCACGCCACCCCGGTGGCGGCGGCGGGGGCTCCGGGGAATGCGT
ACGGTGGGGCCACCCCGGTGGCGGCGGCTATGTCGGACCCCCCTCCGTCC
TACGAGGTGAGCGCGCGCGCGTGCGCTCTCTCGGCAGCCACGGGGGAGTC
AAAGTGGTGGAACGTATCACGCGGCGGAACCATCCAGGCGATCATCGAGC
TCGTCACCCCCGACTCTGCGGGGGGGGGAAGCACCGGGACGCACCCCAAC
GCCGCCTACTCCAGGAGCAGCGCGGCGGCGGCGGCGGCCGCCCCAGCGGC
GGCGTCCTCCCGACCAAGCGGCGGAGGCGGCAGCTACGGCGGGGGTCGAG
TCGCCACGATTAACCCGTCCCCCCACGTCGCGGTCGCTCACGCCACCCCG
GTGGCGGCGGCGGGGGCTCCGGGGAATGCGTACGGTGGGGCCACCCCGGT
GGCGGCGGCTATGTCGGACCCCCCTCCGTCCTACGAGGTGAGCGCGCGCG
CGTGCGCTCTCTCG
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