mRNA_E-fasciculatus_F_contig13198.2409.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13198.2409.1
Unique NamemRNA_E-fasciculatus_F_contig13198.2409.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13198.2409.1 vs. uniprot
Match: D7FQW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQW3_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 2.650e-85
Identity = 163/216 (75.46%), Postives = 166/216 (76.85%), Query Frame = 1 
Query:    1 MMTADARLAMLIVVFLFAATXXXXXXXXXXXXXXXXNLHSRQPLASCFVGPAVAAGSIATRSERTPAASSKEQQQQHGRPTTADKDTYSPLARRVLLRRALARPKVRAGAGSSSPAATHSASRTAADVGSLFRLEVAQRMREMKLMTQPGVGPLAPVAGPXXXXXXXXLAETLATNKLEGDAAALEHQISLLSGRIASIADHLKVKSGAAVVEKGI 648
            M TADARLAMLIVVFLF AT                     +PL SCFVGPAVAAGSIATRSE TPAASSKEQQQQHGRPTT  KDT SPLARRVLLRRALARPK RAGA SSSPAAT   SRTAADVGSLFRLEVAQRM+EMKLMTQPGVGPLAPVAGP        LAETLA NKLEGDAAALEHQISLLS RIASIADHLK     AV  KG+
Sbjct:    1 MTTADARLAMLIVVFLFTATVATAALGADGSD------RRSRPLTSCFVGPAVAAGSIATRSESTPAASSKEQQQQHGRPTTG-KDTCSPLARRVLLRRALARPKARAGAESSSPAATRPGSRTAADVGSLFRLEVAQRMKEMKLMTQPGVGPLAPVAGPAAAAAS--LAETLAKNKLEGDAAALEHQISLLSARIASIADHLKTTPTDAVSRKGL 207
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13198.2409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQW3_ECTSI2.650e-8575.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13198contigE-fasciculatus_F_contig13198:1054..3682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionS15/NS1, RNA-binding
Ec32 orthologEc-02_003120.1
Exons2
Model size657
Cds size657
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.3806648-CDS-E-fasciculatus_F_contig13198:1053..13121622927822.3806648-CDS-E-fasciculatus_F_contig13198:1053..1312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13198 1054..1312 -
1695995709.742454-CDS-E-fasciculatus_F_contig13198:1053..13121695995709.742454-CDS-E-fasciculatus_F_contig13198:1053..1312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13198 1054..1312 -
1622927822.3922465-CDS-E-fasciculatus_F_contig13198:3284..36821622927822.3922465-CDS-E-fasciculatus_F_contig13198:3284..3682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13198 3285..3682 -
1695995709.752961-CDS-E-fasciculatus_F_contig13198:3284..36821695995709.752961-CDS-E-fasciculatus_F_contig13198:3284..3682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13198 3285..3682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13198.2409.1prot_E-fasciculatus_F_contig13198.2409.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13198 1054..3682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13198.2409.1

>prot_E-fasciculatus_F_contig13198.2409.1 ID=prot_E-fasciculatus_F_contig13198.2409.1|Name=mRNA_E-fasciculatus_F_contig13198.2409.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=219bp
MMTADARLAMLIVVFLFAATAATAALGADSSSSSSSNLHSRQPLASCFVG
PAVAAGSIATRSERTPAASSKEQQQQHGRPTTADKDTYSPLARRVLLRRA
LARPKVRAGAGSSSPAATHSASRTAADVGSLFRLEVAQRMREMKLMTQPG
VGPLAPVAGPAAAAAAASLAETLATNKLEGDAAALEHQISLLSGRIASIA
DHLKVKSGAAVVEKGISS*
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mRNA from alignment at E-fasciculatus_F_contig13198:1054..3682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13198.2409.1 ID=mRNA_E-fasciculatus_F_contig13198.2409.1|Name=mRNA_E-fasciculatus_F_contig13198.2409.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2629bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13198:1054..3682- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGACGGCGGACGCTCGGCTGGCAATGCTGATTGTAGTGTTTCTGTT
CGCAGCAACGGCGGCAACGGCAGCTCTCGGGGCGGATAGCAGCAGCAGCA
GCAGCAGCAACCTCCACAGCAGGCAGCCGTTGGCTTCCTGCTTCGTAGGG
CCCGCGGTCGCTGCAGGCTCGATCGCAACGAGGTCGGAGCGTACCCCAGC
AGCCAGCTCTAAGGAACAGCAGCAGCAGCATGGGAGACCAACGACAGCCG
ACAAGGACACTTATTCTCCGTTGGCCAGGCGGGTGCTCTTGAGACGCGCC
CTTGCGAGGCCAAAGGTCCGGGCGGGGGCCGGGAGCTCGAGCCCGGCGGC
GACACATTCTGCTTCGAGGACGGCGGCGGACGTGGGGAGCCTATTCCGGT
AAGCAGAAAAGTCACGCAGGAACAAAGCAGAAGAGGTCAAGGTTGGGAGG
GACGCCACACTGCCCAGCACTTAGTTTAGCGTGCATCAGTACCACCAAGA
CTCGTCTGCGTTTTGCAACTGATGATCTTCGGCTAGAAGTAACTGGGCAT
GGAGCACTGCATGTTTTTGCAGCGATTGCGCCGATGTATTCGGAGGGGGT
AGTGCCATGTTCTCGAAATTCGTGTCGCTTGACGCATGTTGAAGTTCGTC
GGTTTGCCGAATGCAGTCGTTGGGGAATTACATTCACGGAGTTTTCGGCA
GTAGGGAGTCTGCTGCATACTCGTCCAAAGGCAAGATTTTGAAAATGGGA
CTACAGCGGTAGTGGCAATCGTTTCCGTGTTGCTACTACTGCTGTGCGTA
CTCGGAAAGACTGCTGCAGCCGCATCTGGAAGACAGGGCCTTCCTCACAC
GCATGCGCACGAGAACACAACATCTGGTACACACACCCGTCATATTGCCG
GTGACACAAACTTTCTCCGCCAAATATCCCGCGTTTCCCTTGCGTATGCA
TACGTGCTTCATGACACATGATTAACACATCGGCGCAAACATCGAAAATC
TGGACCCGAGGGTCACTTTATTTATTCAATTAGCATCAACCGCGCTACTA
CTGCTGTACATCCGACGGACCAATGACAAAAAATGCAGTATTTTTTCTTG
CGGGATAACAAACGCGCACACCAGTCGTAGCGTTGAACTGCCAGGGAAGA
CGCAGGAGTTTGACGACAGCAGTGTCCTGCTTCTAGAGAACAAGGAAAAT
ACTCAATACGACCAATAGTATTTTGTATGCGAATCAGAGTGGGTGGGGAC
GTTACATGCAGATACCCCCCGGGTTCTGTGGTAAGGCGTTTTCGCTGAGG
CGTGCTGCTTTCTCGTGTGCATCTGGGCCTGGATACCGCCGAGGGATGGC
GGACACCCTGTAACCGTCGTGTTCGTCTTCGGGCTTCTCGTACATACTAC
TGCTGTCGGTGACATAGGATACAACACCCACAGAAACCACACCCGTAACG
AATGTACAGAAAACCCGTGATCTAGTTCTTCAGCTCTGGAAAAGGCGCCG
ATAATATCGCACGGTCACAGAAGATATTATCGCCTCCGAAGTTCAGCCGC
ATTTATGTATCCATGTAGCCCCCTATCACACCGCTTGCACCTGTGGTGTG
GTAGCCCGTGATCACGCAAAAAGCGCCTGCAACCCTGCGCTTGAGCTAGA
CCGACAACACAGCGGAGATTAACGAAGCACACAACACTGCTGATGAAAGC
ATCGCGGCTCAGACTGCAGTGAGGCAGACTCCAGCGGAGACTTGTAGTTT
GTCAGACCCTAGCGGAGGCGCTACGCCCAACTACGATAAAGCACGTACTT
GCTCAGAGGCCCGCACCCCCCGTTATTATCACACACCCTGAAGGGTGGCG
TCTTGTGGGAACAGTCCATGATGCACGTGTAACGTATCACACCCCGCGAT
TAAACACACACCCTCGTTTTCACACACCCTGTAGGCTGGGTCGGGTGGGC
GCACTTCATCCCACGGGTGACAGTATCACACCCCCATGTTCGTCGCACCG
TCTTGTTTATCACACCCCCTTGGGGGGGAGTCCTGTGTGACGTTTTGTCA
AACGGGTCACGCACGATATCACACCCTCAACAGAATTCCACACACGTGTT
CTGGTTTGTTGATCGAAAATTGTCGTCACATGTTTAGGGTGTTGTATCGT
ACGTCACCTACGGTAAATACCGCCTGCCTGCCACCCGTTGGTCGGGCATG
TCGCACTCGCACGTGCCAGCACGTACTCGCTCAGCAGGTATGAATTGTCT
ACCGCTCCGAGATGCTGTCTAAGCCGTTGCCACGAGCTGTCGGTTCTACG
TGTCCGTTGATTTTTACCTCCCGTCCCTGTCGCCGGAATGAACAAAAAAA
CAACTGCTACCTATCTTTAGGTTGGAGGTTGCCCAGCGCATGAGGGAGAT
GAAGCTCATGACGCAGCCCGGAGTTGGCCCGCTCGCGCCGGTGGCGGGGC
CTGCCGCTGCGGCCGCCGCCGCTAGCCTCGCGGAGACGCTGGCCACGAAC
AAGCTCGAGGGGGACGCGGCTGCGCTGGAGCATCAGATCTCCTTGCTCTC
TGGGAGGATCGCAAGCATCGCGGACCACCTCAAGGTGAAAAGCGGAGCGG
CAGTAGTGGAAAAAGGCATCAGCTCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13198:1054..3682-

>mRNA_E-fasciculatus_F_contig13198.2409.1 ID=mRNA_E-fasciculatus_F_contig13198.2409.1|Name=mRNA_E-fasciculatus_F_contig13198.2409.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13198:1054..3682- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGACGGCGGACGCTCGGCTGGCAATGCTGATTGTAGTGTTTCTGTT
CGCAGCAACGGCGGCAACGGCAGCTCTCGGGGCGGATAGCAGCAGCAGCA
GCAGCAGCAACCTCCACAGCAGGCAGCCGTTGGCTTCCTGCTTCGTAGGG
CCCGCGGTCGCTGCAGGCTCGATCGCAACGAGGTCGGAGCGTACCCCAGC
AGCCAGCTCTAAGGAACAGCAGCAGCAGCATGGGAGACCAACGACAGCCG
ACAAGGACACTTATTCTCCGTTGGCCAGGCGGGTGCTCTTGAGACGCGCC
CTTGCGAGGCCAAAGGTCCGGGCGGGGGCCGGGAGCTCGAGCCCGGCGGC
GACACATTCTGCTTCGAGGACGGCGGCGGACGTGGGGAGCCTATTCCGAT
GATGACGGCGGACGCTCGGCTGGCAATGCTGATTGTAGTGTTTCTGTTCG
CAGCAACGGCGGCAACGGCAGCTCTCGGGGCGGATAGCAGCAGCAGCAGC
AGCAGCAACCTCCACAGCAGGCAGCCGTTGGCTTCCTGCTTCGTAGGGCC
CGCGGTCGCTGCAGGCTCGATCGCAACGAGGTCGGAGCGTACCCCAGCAG
CCAGCTCTAAGGAACAGCAGCAGCAGCATGGGAGACCAACGACAGCCGAC
AAGGACACTTATTCTCCGTTGGCCAGGCGGGTGCTCTTGAGACGCGCCCT
TGCGAGGCCAAAGGTCCGGGCGGGGGCCGGGAGCTCGAGCCCGGCGGCGA
CACATTCTGCTTCGAGGACGGCGGCGGACGTGGGGAGCCTATTCCGGTTG
GAGGTTGCCCAGCGCATGAGGGAGATGAAGCTCATGACGCAGCCCGGAGT
TGGCCCGCTCGCGCCGGTGGCGGGGCCTGCCGCTGCGGCCGCCGCCGCTA
GCCTCGCGGAGACGCTGGCCACGAACAAGCTCGAGGGGGACGCGGCTGCG
CTGGAGCATCAGATCTCCTTGCTCTCTGGGAGGATCGCAAGCATCGCGGA
CCACCTCAAGGTGAAAAGCGGAGCGGCAGTAGTGGAAAAAGGCATCAGCT
CATGAGTTGGAGGTTGCCCAGCGCATGAGGGAGATGAAGCTCATGACGCA
GCCCGGAGTTGGCCCGCTCGCGCCGGTGGCGGGGCCTGCCGCTGCGGCCG
CCGCCGCTAGCCTCGCGGAGACGCTGGCCACGAACAAGCTCGAGGGGGAC
GCGGCTGCGCTGGAGCATCAGATCTCCTTGCTCTCTGGGAGGATCGCAAG
CATCGCGGACCACCTCAAGGTGAAAAGCGGAGCGGCAGTAGTGGAAAAAG
GCATCAGCTCATGA
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