mRNA_E-fasciculatus_F_contig13192.2407.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13192.2407.1
Unique NamemRNA_E-fasciculatus_F_contig13192.2407.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13192.2407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13192contigE-fasciculatus_F_contig13192:460..1108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size649
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13192.2407.1prot_E-fasciculatus_F_contig13192.2407.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13192 524..1039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.2881691-UTR-E-fasciculatus_F_contig13192:459..5231622927822.2881691-UTR-E-fasciculatus_F_contig13192:459..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13192 460..523 +
1695995709.6969874-UTR-E-fasciculatus_F_contig13192:459..5231695995709.6969874-UTR-E-fasciculatus_F_contig13192:459..523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13192 460..523 +
1622927822.3093972-UTR-E-fasciculatus_F_contig13192:1039..11081622927822.3093972-UTR-E-fasciculatus_F_contig13192:1039..1108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13192 1040..1108 +
1695995709.7147455-UTR-E-fasciculatus_F_contig13192:1039..11081695995709.7147455-UTR-E-fasciculatus_F_contig13192:1039..1108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13192 1040..1108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.2979352-CDS-E-fasciculatus_F_contig13192:523..10391622927822.2979352-CDS-E-fasciculatus_F_contig13192:523..1039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13192 524..1039 +
1695995709.705728-CDS-E-fasciculatus_F_contig13192:523..10391695995709.705728-CDS-E-fasciculatus_F_contig13192:523..1039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13192 524..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13192.2407.1

>prot_E-fasciculatus_F_contig13192.2407.1 ID=prot_E-fasciculatus_F_contig13192.2407.1|Name=mRNA_E-fasciculatus_F_contig13192.2407.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=172bp
MAAPAENTLPTASFSTARNTKNEKTDTKGVSRPSKTHQNTKIPALRPKTD
EKGVSRPSKTLRRRFDRQKHRKKKIKETIASAPPQPEHEYHGGPQQGNIG
YVGRVMKGGWVSVYATRVKTSMHTSSKAMQPPVDTPPNLHAVFHKPTDTN
TYAKIQTTNKISSFIPFNTAR*
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mRNA from alignment at E-fasciculatus_F_contig13192:460..1108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13192.2407.1 ID=mRNA_E-fasciculatus_F_contig13192.2407.1|Name=mRNA_E-fasciculatus_F_contig13192.2407.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=649bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13192:460..1108+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAAGAACGCCTAGTACATACGCTGCACGAAAGACAACTAACCGAAATA
TCACCAAACCACGTATGGCGGCCCCCGCCGAAAACACATTACCAACGGCG
TCGTTTTCGACCGCCAGAAATACCAAAAACGAAAAAACAGATACGAAAGG
TGTTTCTCGACCGTCGAAAACACACCAAAACACAAAGATACCGGCCCTCA
GGCCAAAAACAGATGAGAAAGGTGTTTCTCGACCGTCGAAAACACTACGG
CGTCGCTTTGACCGCCAAAAACACAGAAAAAAAAAAATCAAAGAAACAAT
AGCTAGCGCCCCCCCCCAGCCGGAACACGAGTATCATGGCGGCCCTCAAC
AGGGAAACATTGGTTATGTAGGGCGGGTAATGAAGGGAGGGTGGGTCAGC
GTCTACGCCACACGCGTCAAAACGTCGATGCACACGTCGTCGAAAGCGAT
GCAACCACCGGTCGATACCCCCCCCAATCTGCACGCAGTATTCCACAAGC
CAACCGATACCAACACATACGCTAAAATCCAGACTACGAACAAAATAAGC
TCCTTCATCCCATTCAACACAGCGCGATAACGACAAAAACAGAAAGAATA
ACATAGCATGTTGTCTACCAGCGTGCCCCATAGCATCAAAAATAGGCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13192:460..1108+

>mRNA_E-fasciculatus_F_contig13192.2407.1 ID=mRNA_E-fasciculatus_F_contig13192.2407.1|Name=mRNA_E-fasciculatus_F_contig13192.2407.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13192:460..1108+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCCCCCGCCGAAAACACATTACCAACGGCGTCGTTTTCGACCGC
CAGAAATACCAAAAACGAAAAAACAGATACGAAAGGTGTTTCTCGACCGT
CGAAAACACACCAAAACACAAAGATACCGGCCCTCAGGCCAAAAACAGAT
GAGAAAGGTGTTTCTCGACCGTCGAAAACACTACGGCGTCGCTTTGACCG
CCAAAAACACAGAAAAAAAAAAATCAAAGAAACAATAGCTAGCGCCCCCC
CCCAGCCGGAACACGAGTATCATGGCGGCCCTCAACAGGGAAACATTGGT
TATGTAGGGCGGGTAATGAAGGGAGGGTGGGTCAGCGTCTACGCCACACG
CGTCAAAACGTCGATGCACACGTCGTCGAAAGCGATGCAACCACCGGTCG
ATACCCCCCCCAATCTGCACGCAGTATTCCACAAGCCAACCGATACCAAC
ACATACGCTAAAATCCAGACTACGAACAAAATAAGCTCCTTCATCCCATT
CAACACAGCGCGATAAATGGCGGCCCCCGCCGAAAACACATTACCAACGG
CGTCGTTTTCGACCGCCAGAAATACCAAAAACGAAAAAACAGATACGAAA
GGTGTTTCTCGACCGTCGAAAACACACCAAAACACAAAGATACCGGCCCT
CAGGCCAAAAACAGATGAGAAAGGTGTTTCTCGACCGTCGAAAACACTAC
GGCGTCGCTTTGACCGCCAAAAACACAGAAAAAAAAAAATCAAAGAAACA
ATAGCTAGCGCCCCCCCCCAGCCGGAACACGAGTATCATGGCGGCCCTCA
ACAGGGAAACATTGGTTATGTAGGGCGGGTAATGAAGGGAGGGTGGGTCA
GCGTCTACGCCACACGCGTCAAAACGTCGATGCACACGTCGTCGAAAGCG
ATGCAACCACCGGTCGATACCCCCCCCAATCTGCACGCAGTATTCCACAA
GCCAACCGATACCAACACATACGCTAAAATCCAGACTACGAACAAAATAA
GCTCCTTCATCCCATTCAACACAGCGCGATAA
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