mRNA_E-fasciculatus_F_contig13191.2406.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13191.2406.1
Unique NamemRNA_E-fasciculatus_F_contig13191.2406.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5JUI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.910e-9
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = -1 
Query:    1 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTSL 129
            G   + RSFR+TPRTKHIDVKFH VRSL  DG+V+   ISTSL
Sbjct:  212 GALKLTRSFRITPRTKHIDVKFHHVRSLVTDGVVDVKQISTSL 254
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5L217_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L217_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-8
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = -1 
Query:    1 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTSL 129
            G   + RSFR+TPRTKHIDVKFH VRSL  DG+V+   ISTSL
Sbjct:  764 GALKLTRSFRITPRTKHIDVKFHHVRSLVTDGVVDVKQISTSL 806
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5K4G1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.310e-8
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = -1 
Query:    1 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTSL 129
            G   + RSFR+TPRTKHIDVK H VRSL ADG+V+   ISTSL
Sbjct:  810 GALKLPRSFRITPRTKHIDVKLHHVRSLVADGVVDVKKISTSL 852
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5L3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.860e-7
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = -1 
Query:    1 IDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTSL 117
            + RSFR+TPRT HIDVKFH VRSL AD +V+   ISTSL
Sbjct:  299 LTRSFRITPRTTHIDVKFHHVRSLVADEVVDVKQISTSL 337
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5JHU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 7.440e-7
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = -1 
Query:    1 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTSL 129
            G   + RSF + PRTKHID KFH VRSL ADG+V+   ISTSL
Sbjct:  329 GALKLTRSFHMIPRTKHIDAKFHHVRSLVADGVVDVKQISTSL 371
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5JUY1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 6.000e-6
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = -1 
Query:    1 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTSL 129
            G   + RSFR+TPRT HIDV FH  RSL ADG+V    ISTSL
Sbjct: 1612 GALKLTRSFRITPRTGHIDVTFHHERSLVADGVVGVKQISTSL 1654
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5KGD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.960e-6
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = -1 
Query:    7 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYIST 129
            G   + RSFR+TPRTK+IDV FH VRSL  DG+V+   IST
Sbjct: 1249 GALTLTRSFRITPRTKYIDVMFHHVRSLVTDGVVDVKQIST 1289
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BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Match: A0A6H5KTJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.080e-5
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = -1 
Query:    4 GCSPIDRSFRVTPRTKHIDVKFHQVRSLAADGIVEAMYISTS 129
            G   + RSFR+TPRTKHIDVKF+ V SL ADG+V+    STS
Sbjct: 1224 GALKLTRSFRITPRTKHIDVKFYHVWSLVADGVVDVKQRSTS 1265
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13191.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JUI6_9PHAE8.910e-967.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L217_9PHAE1.710e-867.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K4G1_9PHAE4.310e-867.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3E4_9PHAE6.860e-769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHU1_9PHAE7.440e-762.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY1_9PHAE6.000e-662.79Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KGD6_9PHAE7.960e-660.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTJ8_9PHAE1.080e-561.90Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13191contigE-fasciculatus_F_contig13191:1827..2372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13191.2406.1prot_E-fasciculatus_F_contig13191.2406.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13191 1840..2163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.2315388-UTR-E-fasciculatus_F_contig13191:1826..18391622927822.2315388-UTR-E-fasciculatus_F_contig13191:1826..1839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13191 1827..1839 +
1695995709.6683164-UTR-E-fasciculatus_F_contig13191:1826..18391695995709.6683164-UTR-E-fasciculatus_F_contig13191:1826..1839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13191 1827..1839 +
1622927822.2528765-UTR-E-fasciculatus_F_contig13191:2163..23721622927822.2528765-UTR-E-fasciculatus_F_contig13191:2163..2372Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13191 2164..2372 +
1695995709.6881516-UTR-E-fasciculatus_F_contig13191:2163..23721695995709.6881516-UTR-E-fasciculatus_F_contig13191:2163..2372Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13191 2164..2372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927822.2433343-CDS-E-fasciculatus_F_contig13191:1839..21631622927822.2433343-CDS-E-fasciculatus_F_contig13191:1839..2163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13191 1840..2163 +
1695995709.6774454-CDS-E-fasciculatus_F_contig13191:1839..21631695995709.6774454-CDS-E-fasciculatus_F_contig13191:1839..2163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13191 1840..2163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13191.2406.1

>prot_E-fasciculatus_F_contig13191.2406.1 ID=prot_E-fasciculatus_F_contig13191.2406.1|Name=mRNA_E-fasciculatus_F_contig13191.2406.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
MYMASTIPSAASDLTWWNFTSMCLVLGVTRKLRSIGEQPSVVLPHDGGCF
FLSLTYGVQQVAEVFLMVLHTPWIKPRTLLRVKRSPLQTLQSLYGYSLSC
SSKVAGV*
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mRNA from alignment at E-fasciculatus_F_contig13191:1827..2372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13191.2406.1 ID=mRNA_E-fasciculatus_F_contig13191.2406.1|Name=mRNA_E-fasciculatus_F_contig13191.2406.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13191:1827..2372+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCGACGTCGAGATGTACATGGCTTCCACAATTCCATCGGCTGCCAGCG
ACCTTACTTGGTGGAACTTCACATCAATGTGCTTGGTCCTGGGGGTAACG
CGAAAGCTGCGATCAATCGGAGAGCAACCGAGTGTTGTCCTCCCACACGA
CGGCGGTTGCTTCTTCCTGAGTCTGACATATGGTGTCCAGCAGGTGGCGG
AAGTGTTCTTGATGGTGTTGCACACCCCTTGGATAAAGCCACGAACTCTG
CTTCGAGTGAAGAGGTCGCCACTCCAGACACTGCAGTCGCTGTACGGCTA
TTCTCTCAGCTGTAGCTCCAAAGTAGCTGGCGTGTGATGATGCGAGGTCA
GGTAGGCAAACACACAAGAGTGATTGTATTATCCACACTCGGACGCCCCA
AGCTGTCTTCACCTGACGGTTGCCGACTTGGCAACGCCTTCACGAACACC
GATTCAAACGCATGCTGTAGAATACAGTCGTTCTTGTACTGCAAGCACTC
TAACAACGTGTGGGGAAGGAAGGGACGCGATATTCCACACAGCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13191:1827..2372+

>mRNA_E-fasciculatus_F_contig13191.2406.1 ID=mRNA_E-fasciculatus_F_contig13191.2406.1|Name=mRNA_E-fasciculatus_F_contig13191.2406.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13191:1827..2372+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACATGGCTTCCACAATTCCATCGGCTGCCAGCGACCTTACTTGGTG
GAACTTCACATCAATGTGCTTGGTCCTGGGGGTAACGCGAAAGCTGCGAT
CAATCGGAGAGCAACCGAGTGTTGTCCTCCCACACGACGGCGGTTGCTTC
TTCCTGAGTCTGACATATGGTGTCCAGCAGGTGGCGGAAGTGTTCTTGAT
GGTGTTGCACACCCCTTGGATAAAGCCACGAACTCTGCTTCGAGTGAAGA
GGTCGCCACTCCAGACACTGCAGTCGCTGTACGGCTATTCTCTCAGCTGT
AGCTCCAAAGTAGCTGGCGTGTGAATGTACATGGCTTCCACAATTCCATC
GGCTGCCAGCGACCTTACTTGGTGGAACTTCACATCAATGTGCTTGGTCC
TGGGGGTAACGCGAAAGCTGCGATCAATCGGAGAGCAACCGAGTGTTGTC
CTCCCACACGACGGCGGTTGCTTCTTCCTGAGTCTGACATATGGTGTCCA
GCAGGTGGCGGAAGTGTTCTTGATGGTGTTGCACACCCCTTGGATAAAGC
CACGAACTCTGCTTCGAGTGAAGAGGTCGCCACTCCAGACACTGCAGTCG
CTGTACGGCTATTCTCTCAGCTGTAGCTCCAAAGTAGCTGGCGTGTGA
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