mRNA_E-fasciculatus_F_contig13187.2404.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13187.2404.1
Unique NamemRNA_E-fasciculatus_F_contig13187.2404.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: D8LQW6_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW6_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.020e-45
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTER---QPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            WHHL+TGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTER   QPPTVKGGAKSGKACEHWDRLGEDL LIQGL
Sbjct:   51 WHHLDTGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERPEGQPPTVKGGAKSGKACEHWDRLGEDLRLIQGL 129          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A7C2TT33_9BACT (Glycosyl hydrolase family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2TT33_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 2.130e-20
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENT--ERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W  ++T   ++ FP GFLWGV+TAAHQ+EGG DNN WS WE    E   P +K G K+G AC+HW+R  ED+ L+Q L
Sbjct:   32 WQKIDTS--KIHFPAGFLWGVATAAHQVEGGCDNNNWSEWETARDENGKPRIKNGQKAGLACDHWNRYKEDIALMQEL 107          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A7Y5G079_9BACT (Glycoside hydrolase family 1 protein (Fragment) n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5G079_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.020e-19
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENT--ERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W   E   +++RFP  FLWGV+TAAHQ+EG  DNN WS WEN       P +K G K+G AC+HW+R  ED+ L+Q L
Sbjct:   31 WDWDEIDVNDIRFPSNFLWGVATAAHQVEGNCDNNNWSAWENAVDASGQPRIKHGQKAGLACDHWNRYREDIKLMQAL 108          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A7Y5FKC5_9BACT (Glycoside hydrolase family 1 protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5FKC5_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-19
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENT--ERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W H++T    +RFP+ FLWGV+T+AHQ+EGG DNN WS WE +      P +K G ++G+ACEHW R  ED+ L++ L
Sbjct:   33 WDHIDT--KRIRFPQHFLWGVATSAHQVEGGCDNNNWSAWEQSVDASGQPRIKQGQRAGRACEHWQRYREDIQLMKAL 108          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A3A0DJS8_9BACT (Glycoside hydrolase family 1 protein n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0DJS8_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 5.200e-19
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENT--ERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W   E   ++++FP  FLWGV+TAAHQ+EG  DNN WS WEN       P +K G K+G AC+HW+R  ED+ L+Q L
Sbjct:   31 WDWDEIDVNDIKFPSNFLWGVATAAHQVEGNCDNNNWSAWENAVDASGQPRIKHGQKAGLACDHWNRYREDIKLMQAL 108          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A7Z9Q278_9BACT (Glycoside hydrolase family 1 protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9Q278_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-18
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENT--ERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W   ET    L FP GF+WGV+TAAHQ+EGG  NN WS WENT  E   P +  G KSG AC+HW+R  ED+GLI+ L
Sbjct:   32 WEKEETKT--LSFPPGFVWGVATAAHQVEGGCTNN-WSEWENTPDENGNPRIHKGNKSGMACDHWNRYREDIGLIESL 106          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A0G4I1C0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I1C0_9ALVE)

HSP 1 Score: 87.0 bits (214), Expect = 2.760e-18
Identity = 34/68 (50.00%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   27 DELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            D L FP+ F+WG +T++HQ+EGG DNN W RWE  +  PP +K  AK G AC+HW+R+ +D+ L++ L
Sbjct:   70 DCLEFPDDFVWGTATSSHQVEGGCDNNNWFRWEMEDHDPPRIKTKAKCGDACDHWNRVEQDIQLMRNL 137          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A7S4D568_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D568_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 5.420e-18
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENTE-RQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W  ++T   +L FP  FLWG STA+HQIEGG DNN WS +E  + +  P +K G + G AC+HW+R+ EDLGL+Q L
Sbjct:  141 WSKIDTR--KLAFPRDFLWGTSTASHQIEGGCDNNNWSAFERRQVKGEPAIKNGDRVGAACDHWNRVDEDLGLMQEL 215          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A7C1BLS1_9BACT (Glycosyl hydrolase family protein n=4 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7C1BLS1_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.710e-17
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 3
Query:   27 DELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWENT--ERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            ++L FP+GF+WGV+T++HQ+EG  DNN W  WEN+  E   P VK G KSG AC+HW+R  ED+ LI+ L
Sbjct:   35 EDLLFPDGFIWGVATSSHQVEGYCDNNDWYIWENSIDEVGKPRVKNGQKSGVACDHWNRYREDIELIKEL 104          
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Match: A0A2M7U9C8_9BACT (Glycoside hydrolase family 1 protein n=4 Tax=Candidatus Marinimicrobia TaxID=62680 RepID=A0A2M7U9C8_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.710e-17
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    3 WHHLETGADELRFPEGFLWGVSTAAHQIEGGNDNNQWSRWEN--TERQPPTVKGGAKSGKACEHWDRLGEDLGLIQGL 230
            W    T   E+ FP+ FLWGV+TAAHQ+EGG  NN WSRWEN  T    P +K G  +G ACE+W R  ED+ LI+ L
Sbjct:   38 WDWEWTDTSEVAFPKRFLWGVATAAHQVEGGCTNNNWSRWENGATTDGSPHIKTGEVTGAACENWTRYPEDIELIREL 115          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13187.2404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW6_ECTSI1.020e-4593.67Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
A0A7C2TT33_9BACT2.130e-2052.56Glycosyl hydrolase family protein n=1 Tax=bacteriu... [more]
A0A7Y5G079_9BACT1.020e-1951.28Glycoside hydrolase family 1 protein (Fragment) n=... [more]
A0A7Y5FKC5_9BACT2.030e-1950.00Glycoside hydrolase family 1 protein n=1 Tax=candi... [more]
A0A3A0DJS8_9BACT5.200e-1950.00Glycoside hydrolase family 1 protein n=2 Tax=candi... [more]
A0A7Z9Q278_9BACT1.340e-1856.41Glycoside hydrolase family 1 protein n=1 Tax=Candi... [more]
A0A0G4I1C0_9ALVE2.760e-1850.00Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S4D568_HETAK5.420e-1851.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7C1BLS1_9BACT1.710e-1754.29Glycosyl hydrolase family protein n=4 Tax=Candidat... [more]
A0A2M7U9C8_9BACT1.710e-1752.56Glycoside hydrolase family 1 protein n=4 Tax=Candi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13187contigE-fasciculatus_F_contig13187:1340..2246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13187.2404.1prot_E-fasciculatus_F_contig13187.2404.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13187 1340..2235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927821.7563314-CDS-E-fasciculatus_F_contig13187:1339..14751622927821.7563314-CDS-E-fasciculatus_F_contig13187:1339..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13187 1340..1475 +
1695995709.3116798-CDS-E-fasciculatus_F_contig13187:1339..14751695995709.3116798-CDS-E-fasciculatus_F_contig13187:1339..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13187 1340..1475 +
1622927821.7673392-CDS-E-fasciculatus_F_contig13187:2152..22351622927821.7673392-CDS-E-fasciculatus_F_contig13187:2152..2235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13187 2153..2235 +
1695995709.322979-CDS-E-fasciculatus_F_contig13187:2152..22351695995709.322979-CDS-E-fasciculatus_F_contig13187:2152..2235Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13187 2153..2235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927821.785596-UTR-E-fasciculatus_F_contig13187:2235..22461622927821.785596-UTR-E-fasciculatus_F_contig13187:2235..2246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13187 2236..2246 +
1695995709.3419423-UTR-E-fasciculatus_F_contig13187:2235..22461695995709.3419423-UTR-E-fasciculatus_F_contig13187:2235..2246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13187 2236..2246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13187.2404.1

>prot_E-fasciculatus_F_contig13187.2404.1 ID=prot_E-fasciculatus_F_contig13187.2404.1|Name=mRNA_E-fasciculatus_F_contig13187.2404.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=73bp
GGTTWRPVPTSCGSRRVSCGAFRPRRTRSRGATTTTSGADGRTPRGSRQR
SRAGLRAARRASTGIGSGRTWG*
back to top

mRNA from alignment at E-fasciculatus_F_contig13187:1340..2246+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13187.2404.1 ID=mRNA_E-fasciculatus_F_contig13187.2404.1|Name=mRNA_E-fasciculatus_F_contig13187.2404.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=907bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13187:1340..2246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGCACCACCTGGAGACCGGTGCCGACGAGCTGCGGTTCCCGGAGGGT TTCCTGTGGGGCGTTTCGACCGCGGCGCACCAGATCGAGGGGGGCAACGA CAACAACCAGTGGAGCCGATGGGAGAACACCGAGAGGTGAGTTAAATTTT TCGTCGTCTGTTTTTTTTAGTACAACACAGCATGCTTTCTCTTTGTCTTC ACATCCACGGTAGTAGCGGTGATGTACATGCCATGCCTCGATTTCTCGTT ATAACCAGTAGCGGGGTACACATGACCGTGCATGCCGTTGTAATAGTTTG AATCAGTTGGGGGGGGTGCTTTCTTGCGGTTTGGTTGTGCTACTACTTTT CCATGTTCCGTGTGTGCGGTGTAGGGAAGTTCCAGTACCGCGAGTAAGTC GCGTATCCCTTTTCCACGCACACATGTATTTTTTTGTGGCATGCGGAACG TTTTCTGTGTGACCACGGATTGGAGCTGCGCGGCAGAAATAAGCTGTGCA CGCTGATTCATCGTAATGAATTAAAAAAAAAAAACAGGTTCCTCATGACC TTTTTTCTTTCGCGCGTACCATGTATGCGTGCCTCCGCAAGAAACAAAAC ACCCGTGTGCGTGCGGGGTCTAGAGGGGTCAGAAGTGGGCGCAAAGTGAA ACTCACAGAAGAACCAACAATGCTTGCCCCGACCGACCTCCACTGAAGCG AAACGATTTCATCACAGCACAGCAAACACAACACAACGCTTTCCCCTCTA TGGAGTTGAACCAAAAAAATCGGCGTGCACGGCTGGCCACATTCGCGAAA TTTATTAAACCAGGCAGCCGCCAACGGTCAAGGGCGGGGCTAAGAGCGGC AAGGCGTGCGAGCACTGGGATCGGCTCGGGGAGGACCTGGGGCTGATTCA AGGGCTC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13187:1340..2246+

>mRNA_E-fasciculatus_F_contig13187.2404.1 ID=mRNA_E-fasciculatus_F_contig13187.2404.1|Name=mRNA_E-fasciculatus_F_contig13187.2404.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13187:1340..2246+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGGCACCACCTGGAGACCGGTGCCGACGAGCTGCGGTTCCCGGAGGGT
TTCCTGTGGGGCGTTTCGACCGCGGCGCACCAGATCGAGGGGGGCAACGA
CAACAACCAGTGGAGCCGATGGGAGAACACCGAGAGGGTGGCACCACCTG
GAGACCGGTGCCGACGAGCTGCGGTTCCCGGAGGGTTTCCTGTGGGGCGT
TTCGACCGCGGCGCACCAGATCGAGGGGGGCAACGACAACAACCAGTGGA
GCCGATGGGAGAACACCGAGAGGCAGCCGCCAACGGTCAAGGGCGGGGCT
AAGAGCGGCAAGGCGTGCGAGCACTGGGATCGGCTCGGGGAGGACCTGGG
GCTGAGCAGCCGCCAACGGTCAAGGGCGGGGCTAAGAGCGGCAAGGCGTG
CGAGCACTGGGATCGGCTCGGGGAGGACCTGGGGCTGA
back to top