mRNA_E-fasciculatus_F_contig13186.2403.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13186.2403.1
Unique NamemRNA_E-fasciculatus_F_contig13186.2403.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13186.2403.1 vs. uniprot
Match: D7FQ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ02_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 4.050e-58
Identity = 107/124 (86.29%), Postives = 115/124 (92.74%), Query Frame = 1 
Query:    1 EGDRDGLAQELRDLQGVFESFRAASAELACDSSERTASALMRERKRASLRAAIWQWRAITLKSDLGTAVMLADRLKLRQAKRGAFGAWLDLCRRRSHARALVSRLLQRKTEVDQRGVLRHWARQ 372
            EGDRD +AQELRDLQGVFE+F+A SAE A DSSERTASA +RER+RASLRAAIWQWRAITL+SDLGTA+MLADRLKLRQAKRGAFGAWLDLCRRRSHARAL+SRLL RKT VDQR  LRHWARQ
Sbjct:  549 EGDRDRVAQELRDLQGVFENFQATSAERAYDSSERTASAFIRERQRASLRAAIWQWRAITLRSDLGTAMMLADRLKLRQAKRGAFGAWLDLCRRRSHARALMSRLLHRKTAVDQRRTLRHWARQ 672
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BLAST of mRNA_E-fasciculatus_F_contig13186.2403.1 vs. uniprot
Match: A0A6H5K0I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.650e-25
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   19 LAQELRDLQGVFESFRAASAELACDSSERTASALMRERKRASLRAAIWQWRAITLK--SDLGTAVMLADRLKLRQAKRGAFGAW 264
            L QEL  LQGVF++F+A SAE A DSSERTASA +RER+RASLRAAIWQWRAITL+  S+LGTA+MLADRLKLRQAKR     W
Sbjct:   12 LHQELHHLQGVFDNFQATSAERAYDSSERTASAFVRERQRASLRAAIWQWRAITLRASSELGTAMMLADRLKLRQAKRRTLRHW 95
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13186.2403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ02_ECTSI4.050e-5886.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0I6_9PHAE1.650e-2573.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13186contigE-fasciculatus_F_contig13186:571..2989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size379
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13186.2403.1prot_E-fasciculatus_F_contig13186.2403.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13186 571..2987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927821.6440651-CDS-E-fasciculatus_F_contig13186:570..5971622927821.6440651-CDS-E-fasciculatus_F_contig13186:570..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 571..597 +
1695995709.2475789-CDS-E-fasciculatus_F_contig13186:570..5971695995709.2475789-CDS-E-fasciculatus_F_contig13186:570..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 571..597 +
1622927821.6558561-CDS-E-fasciculatus_F_contig13186:1486..16451622927821.6558561-CDS-E-fasciculatus_F_contig13186:1486..1645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 1487..1645 +
1695995709.2574747-CDS-E-fasciculatus_F_contig13186:1486..16451695995709.2574747-CDS-E-fasciculatus_F_contig13186:1486..1645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 1487..1645 +
1622927821.6768336-CDS-E-fasciculatus_F_contig13186:2001..20581622927821.6768336-CDS-E-fasciculatus_F_contig13186:2001..2058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 2002..2058 +
1695995709.279319-CDS-E-fasciculatus_F_contig13186:2001..20581695995709.279319-CDS-E-fasciculatus_F_contig13186:2001..2058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 2002..2058 +
1622927821.6916263-CDS-E-fasciculatus_F_contig13186:2608..26881622927821.6916263-CDS-E-fasciculatus_F_contig13186:2608..2688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 2609..2688 +
1695995709.2903202-CDS-E-fasciculatus_F_contig13186:2608..26881695995709.2903202-CDS-E-fasciculatus_F_contig13186:2608..2688Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 2609..2688 +
1622927821.7108865-CDS-E-fasciculatus_F_contig13186:2935..29871622927821.7108865-CDS-E-fasciculatus_F_contig13186:2935..2987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 2936..2987 +
1695995709.3031132-CDS-E-fasciculatus_F_contig13186:2935..29871695995709.3031132-CDS-E-fasciculatus_F_contig13186:2935..2987Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13186 2936..2987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13186.2403.1

>prot_E-fasciculatus_F_contig13186.2403.1 ID=prot_E-fasciculatus_F_contig13186.2403.1|Name=mRNA_E-fasciculatus_F_contig13186.2403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=125bp
EGDRDGLAQELRDLQGVFESFRAASAELACDSSERTASALMRERKRASLR
AAIWQWRAITLKSDLGTAVMLADRLKLRQAKRGAFGAWLDLCRRRSHARA
LVSRLLQRKTEVDQRGVLRHWARQT
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mRNA from alignment at E-fasciculatus_F_contig13186:571..2989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13186.2403.1 ID=mRNA_E-fasciculatus_F_contig13186.2403.1|Name=mRNA_E-fasciculatus_F_contig13186.2403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2419bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13186:571..2989+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGGGATAGGGACGGTCTTGCCCAGGTGGGTGGGGTCGACGGGATCGT
ATGAGGCCGGGCGTGTGTTTCTTGATTGGTGTTGTCTTGGCAGCCCCGTG
CCAGCTGGGAGGCTGGAGGACACAAAGATGGTGTATTTTCTAGAAGGCCC
TCTTGAATTATGATCAACGCGACCGGTTCGTCCAATGCCAGTATCAAACG
AAACGTCATGTGCGCATATGTGGGTGTTTCTTATATTGTGTCATCACCCG
CTCGAATCGGCTGACCAATAAAGAGACATTGGTTTCCGCGGGCGAATAAC
GGCAGAACCCTTTCAAGTCCACGTGCTCACCTGACAGCTTGGGTGGGCGG
CGGAGTATGCTTGCGTTCATGTCTAGACGTAATTGCGTCGAGAAACTCTC
TTGTTTAGCGGGCCAGGTGGAGAATTTGGTAGCAGTTGTGAGGGAATAAA
GGTACCGCCTCGACCGATTTCGGGCATCACATACACGTCCGGTCTGCACT
CGCAAGCGTTTGCGTCGGCGGCGACTGCTGTTGCCTGCAGCCGAGATGTC
ATCGGTTACAAGTTTTATGCTGAGAATTAGACATTTCTTGTTGCCCTGAA
GCATAATGAACAGACGCCGAATGCTGTTTCGTAAGACAACGGGTGTAGAT
GCTGCAAAGGCGTATCTACGGGTCATGAGGCATGCACGAGGCTTGTTTTG
CTTCATATTTGTCATGGAATCGAGTAAAAGATGAACGTTTCGCATTGAGA
AAGCATTTCTGTGCGCTGGGTGTTCTTTTTTTTCTGTCTACTCGTAATTT
ACATGTTTTTTCCAGGAGAAAAAAACCCTTACCAAATGTCGTTCTCCGCT
AAATGTTACTTCAAACCACGTTATTTCCGCGTGTTCTGCTTGTGCCTTTG
TTTTTTCTTTCACCAGGAGTTGCGCGACTTGCAAGGCGTTTTCGAGAGTT
TTCGAGCCGCGTCGGCGGAGCTCGCGTGCGACTCTTCGGAGCGAACTGCC
TCCGCCTTGATGCGGGAGAGGAAAAGGGCGTCGTTGCGCGCCGCCATCTG
GCAGTGGAGAGCAATCACCCTCAAGGTACGGGGAGACTACATAGCGGGGG
AACTTGGGTGGCGAACGCCTCCGCCTAAGATCAGACGAGCAGTTTGCGAG
TCATTGGACGCTCTATAGAAAAGCGGTGGGACGTGCTTTCAAGCCAAACT
ATACTAGGAGGCCGTAAGGGTTTGCAGTGACAAGGTTTGTCTTAATTGTG
GCATGCTCAGCACCGGTTACCCCGAAATCCGATGCGGTCCCCGCCCTCAA
AGGGCATCGGACAGAGGGTGGATGATAGAGCGTGTGAGCCAACACTGAAA
CCTACACCCCGCCCGTTTCCATTCCCCGCTTGAACGCTGTGCCGTGCTTT
GATGTCGCGAACTCGGATGGTGCACGTGCAGTCGGACTTGGGGACGGCGG
TGATGCTGGCCGATAGACTAAAGCTCCGGCAAGCGAAGGTAAATGAAGGC
GGCGGAACAGCTTCTTTCAACGTTTTCCTCGCATCTTTTGTTTATGTTCT
CTGCACCGTCTTTCCCTAGCCGCCGGGGTCTAACTGAAAGCGTCCCCCCG
CTCCCCCTCAAGCTCCTCGTGCGATGCGTGCGATTGTTTTTCGCGCTGTT
GTTGCATGAAGCGTGTCGAAACGGCACTACACCTGCTGGACTCCCATATA
CCTTGCCGTGTTTTCTATCCTACGACTGTCTCGTGATCTAGACTAACGTT
CACGGTTTTGCCCGGGTCCACCCACATCGACCTTTCGTGTCCCTTTGTAG
AGTCGAGGCACATGTGCACCCACGCAAGAGTACGCACGAGGTTACTATGT
ACCCACCTCCCGCGTTTCCGGCCACCGGCACAACATACGAGACGAAACGA
GCAGCTTACCCCCCTTCTCCAAGTACCCTCCTCCGGAATATACGACACCT
TTTTCGTGCCCCCTTCTCCCTTCTGATCCCCATGTCGACTCCCCACCTCC
CCCGCCGTTGTTGTGGTTGCGTGCGTGCTTTACTCCAGCGCGGTGCGTTC
GGCGCGTGGTTGGACCTTTGCCGGCGACGCTCGCACGCTCGCGCGCTGGT
GTCAAGGCTTCTCCAGCGGTGAGTGTAATTTTCATCCTCGGTTCAGGTTT
GTTTTCTTGTTTGCACTCTGTCTACCCGTTTCAATTTCTGTCTCGTTTCA
CGGCGCTCCCATACACGCAATCCGTTGCCATGGTGATTCTAAAACCCGTG
TCTCCGCCTGACTGCCCCCCCCCCCTCCTGCCCAAACGAACGCACGCATG
ATACGTTCCGTTTACAATGGCCCCAAACCAAACGAAAAATACACACACAC
ACACACACAAAATAGGAAAACGGAGGTCGATCAGCGAGGAGTTTTGCGCC
ACTGGGCCCGTCAAACCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13186:571..2989+

>mRNA_E-fasciculatus_F_contig13186.2403.1 ID=mRNA_E-fasciculatus_F_contig13186.2403.1|Name=mRNA_E-fasciculatus_F_contig13186.2403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13186:571..2989+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGGGGGATAGGGACGGTCTTGCCCAGGAGGGGGATAGGGACGGTCTTGC
CCAGGAGTTGCGCGACTTGCAAGGCGTTTTCGAGAGTTTTCGAGCCGCGT
CGGCGGAGCTCGCGTGCGACTCTTCGGAGCGAACTGCCTCCGCCTTGATG
CGGGAGAGGAAAAGGGCGTCGTTGCGCGCCGCCATCTGGCAGTGGAGAGC
AATCACCCTCAAGGAGTTGCGCGACTTGCAAGGCGTTTTCGAGAGTTTTC
GAGCCGCGTCGGCGGAGCTCGCGTGCGACTCTTCGGAGCGAACTGCCTCC
GCCTTGATGCGGGAGAGGAAAAGGGCGTCGTTGCGCGCCGCCATCTGGCA
GTGGAGAGCAATCACCCTCAAGTCGGACTTGGGGACGGCGGTGATGCTGG
CCGATAGACTAAAGCTCCGGCAAGCGAAGTCGGACTTGGGGACGGCGGTG
ATGCTGGCCGATAGACTAAAGCTCCGGCAAGCGAAGCGCGGTGCGTTCGG
CGCGTGGTTGGACCTTTGCCGGCGACGCTCGCACGCTCGCGCGCTGGTGT
CAAGGCTTCTCCAGCGCGCGGTGCGTTCGGCGCGTGGTTGGACCTTTGCC
GGCGACGCTCGCACGCTCGCGCGCTGGTGTCAAGGCTTCTCCAGCGGAAA
ACGGAGGTCGATCAGCGAGGAGTTTTGCGCCACTGGGCCCGTCAAACCGA
AAACGGAGGTCGATCAGCGAGGAGTTTTGCGCCACTGGGCCCGTCAAACC
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