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Homology
BLAST of mRNA_E-fasciculatus_F_contig1318.2399.1 vs. uniprot
Match: D8LD48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD48_ECTSI) HSP 1 Score: 284 bits (727), Expect = 6.710e-86 Identity = 186/246 (75.61%), Postives = 197/246 (80.08%), Query Frame = 1
Query: 19 MAVFPRVQQQGRHGSRGGGRGTVSSSSSSVSAAKATTPLRTATAKQRASSGARSSPRLHLTQKRTPANARRGSGPVANQFASNQRQASPTKGRTSSVGAHRAGSGARTTSRKATKTAXXXXXXXXXXXXXSSPADGVAKVMIDLKGDVTAIIDKAMEKVETECGTFVTTALESCSAGVSGREGDDETAAAAFLEMETRQASMATRRSDMLKEVESNGSSLSAVVERCRAALDSLQQAESRKLKSGV 756
MAVFPRVQQQGRHGSRGGGRGT RT TAK+RASS RSSPRLHLTQKRTPANARRGSGPV N+FASNQRQ++ KGRTSSVGAHR SG XXXXXXXXXXXXX SPAD VAKVMIDLKGD TA+IDKAM KVE ECGTFV T LESCSAGVSGRE DETAAAA E+ETRQAS+A+RRS+MLKEVESN S+LSAVVERCRAALDSLQQAESRKLKSG+
Sbjct: 1 MAVFPRVQQQGRHGSRGGGRGTXXXXXXXXXXXXXXXXRRTVTAKKRASSSVRSSPRLHLTQKRTPANARRGSGPVGNRFASNQRQSTKAKGRTSSVGAHRDSSGGXXXXXX--XXXXXXXXXXXXXXXXXSPADDVAKVMIDLKGDSTAVIDKAMGKVEAECGTFVMTVLESCSAGVSGREEHDETAAAALREIETRQASLASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRKLKSGL 244
BLAST of mRNA_E-fasciculatus_F_contig1318.2399.1 vs. uniprot
Match: A0A6H5LLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS0_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.370e-51 Identity = 126/161 (78.26%), Postives = 136/161 (84.47%), Query Frame = 1
Query: 274 QASPTKGRTSSVGAHRAGSGARTTSRKATKTAXXXXXXXXXXXXXSSPADGVAKVMIDLKGDVTAIIDKAMEKVETECGTFVTTALESCSAGVSGREGDDETAAAAFLEMETRQASMATRRSDMLKEVESNGSSLSAVVERCRAALDSLQQAESRKLKSGV 756
Q + KGRTSSVGAHR SG RT XXXXXXXXXXXXXSSPADGVAK+MIDLKGD+TA+IDKAM KVE ECGTFVTT LESCSAGVSGRE ETAAAA EM+TRQASMA+RRS+MLKEV SN S+LSAVVERCRAALD+LQQAESRKLKSG+
Sbjct: 13 QRTKAKGRTSSVGAHRDSSGGRTXXXX--XXXXXXXXXXXXXXXXSSPADGVAKLMIDLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEHYETAAAALREMKTRQASMASRRSEMLKEVASNSSNLSAVVERCRAALDNLQQAESRKLKSGL 171
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_000440.1 |
| Exons | 5 |
| Model size | 2721 |
| Cds size | 822 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1318.2399.1 >prot_E-fasciculatus_F_contig1318.2399.1 ID=prot_E-fasciculatus_F_contig1318.2399.1|Name=mRNA_E-fasciculatus_F_contig1318.2399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=274bp
MAVFPRVQQQGRHGSRGGGRGTVSSSSSSVSAAKATTPLRTATAKQRASS GARSSPRLHLTQKRTPANARRGSGPVANQFASNQRQASPTKGRTSSVGAH RAGSGARTTSRKATKTASAAAAAGGGARKKSSPADGVAKVMIDLKGDVTA IIDKAMEKVETECGTFVTTALESCSAGVSGREGDDETAAAAFLEMETRQA SMATRRSDMLKEVESNGSSLSAVVERCRAALDSLQQAESRKLKSGVSVLP PLTQFPVFCREGKGGYLGRTTSA* back to topmRNA from alignment at E-fasciculatus_F_contig1318:3542..7985+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1318.2399.1 ID=mRNA_E-fasciculatus_F_contig1318.2399.1|Name=mRNA_E-fasciculatus_F_contig1318.2399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4444bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1318:3542..7985+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GGCCAAAGACTCGTTCCGATGGCGGTTTTTCCAAGGGTGCAGCAGCAGGG
GCGTCACGGCAGTCGTGGTGGCGGCAGAGGCACGGTTTCGTCTTCGTCGT
CGTCCGTTTCCGCCGCCAAGGCAACGACCCCGCTGCGAACGGCAACCGCC
AAGCAGGTGACAGAATGTGGCACAGGAGCGGATGGGCTAACCGCCTGGCT
CGTGCGGGTGTTTGCGTCCGCGAGGGAAGACATTGTTCCAATGGGTGTTG
GTGCATTGTGGCTCTGACGCAAGATATGACCTGCTACCGTCGCGAGTTCT
TCCCGTACATCGGCCTGTAGACTATACCGTGGCGCAAAGGGGATGGGATC
AACGACGCCAAGTGTTAGATGAGTACGGGCAGAGGGAGGTACTGGATAGA
GACATCGGAATGTTTTTTTTTGTGAAGACAGCAACAACAACGACAACAAT
GTATATATTTTCCGCACCATAGCTTTGATAGCTTTCCCCACGAGAAATGT
GGTCCCGACACCTGTCCCTCTTCGTCCATCTCTCCGATCTCAGAGGGCAT
CCAGCGGCGCCCGGTCCTCTCCCAGGCTTCACCTCACACAAAAGCGAACC
CCAGCTAACGCTAGACGCGGCTCTGGCCCAGTCGCAAACCAGTTCGCTTC
CAACCAACGTCAGGCAAGCCCAAGTACTACTCGCGTCCAAAGGGAGCTGG
AGTACACTGGTGGTGTAAAAAGAAAGGAAGACTCTACATAATGCTCGCGG
GTTTGTACCCACCGCACGCTACCTACGACACCATAAAATGCTTTGTCGTT
GTCCACCTTCCTAGTACACCCTCGAGAGTAACCTCCCCTACCGTTCGGTA
GACGAAAGCTTTTTCACCACCCGGCCCCCGCCCCACCGTCCTCTCTCCCC
AATTTTTCCTGCTGCTATTGAGCTGGACATGTTTGACTATTTACGGTGTC
ACGTACTCAGGAGACGCGTCTTAGCTTCCATGTTTTCATCCCATCCAGCT
TTGTTAATCTTGTTCTTGCTGGCGACTCCCGCGCCGTCTACATCATGTGC
CACCCGAACGTGTTGTTAACCCGCGACGCACAGAAATCGAAAGCCAAGGG
ACGGACTTCCTCTGTTGGTGCACACCGCGCCGGCAGTGGCGCTCGCACCA
CATCAAGGAAGGCAACGAAAACGGCCTCGGCAGCGGCAGCGGCGGGCGGA
GGAGCGCGGAAAAAGTCGTCGCCGGCAGACGGCGTGGCGAAGGTCATGAT
TGATCTCAAGGGAGATGTCACCGCTATCATTGACAAGGCCATGGAGAAGG
TGGAGACTGAGTGCGGCACCTTTGGTGAGAGCGAACGATGATTTTGTTGC
GTTTCGGGACTCGGGCTTCTCTCAACTACAGTAGCGTTCACCCATCTTTC
TGATGGTGGTACTGCATCTGCACGGTGGGTTGCCGGTACAATGTAGGGCG
GGTTCCATATCTTGGCACGGGTGAAGCAATCAAGGTGTGCGATTCTCTGA
ATATGGCGGGTGAATCGACTTGGCACATTCCCGCCTTCTACCTCTTCTGT
AAGTACCCACTGAAGTCATTTCTCCTTGTGGGTTGCTTACCCAACCAAAA
GGAGTGCATGCTGTACCCCGTGCGACAACCACAATGTCCTGTTGCCATCT
GGTGCGTGGTGGCAGTGACGACGGCGCTGGAAAGCTGCTCCGCTGGCGTC
TCCGGGCGGGAGGGAGACGACGAGACGGCGGCCGCGGCATTCCTCGAGAT
GGAGACAAGGCAGGCCTCGATGGCTACCCGGCGTTCGGATATGCTCAAGG
AGGTCGAGTGAGTTGCTCCCCGTTCCTGTTATCTCAGCTCAGCTCAGCTC
CGTCTCACATCTAAATATCTCATCTCATTTCTCCGAAAAAGCTCTCATCT
TGTTGTTGCGTCAACTGATCTCGGACAATCTGAGGCCGTCTCATGTCTAT
GTCATTTCAGCTCGTTATATCGAGCTGCTGTCCCTACCTCTTTGCTGAGG
GCGTGCATATCCTCCAGGTATTACATCCCATTCCTACCTACAGTACACGA
GTTTTTAAATCTTTCTCGCCTTGTTACACGGGATTATCCTCGCGCGATCT
CGTCGGTTTCAGCCCTGAAACGGGTTACCTCTTCCTCAACTCTCGCAAGT
CCAGCTCTTCCCCAACTTTTGTCTCGACTTTTCCGAAGCCCATCTGAAGA
TTACAATAGCGTCACTTCTGTCTGCTCTCGCAAGAATCTGCACTTCATGC
TGTATGCATATCCGCTTTTAATTTTTGCTGAAAGTCTTTGAACAATCTTC
TTCGAGCTTCGGCGAAGTAGGCACTTTCAATGCGTACAGCTATTCTCGTT
CTCATACCCGACGTTTTTTTCCCCGTTGCCAGGAGCAACGGCAGCAGTTT
GTCAGCGGTCGTCGAGCGCTGTAGAGCTGCCCTGGACAGTCTGCAGCAGG
CGGAGAGCCGCAAGCTCAAGAGCGGCGTGAGTGTACTACCCCCCCTCACA
CAATTTCCGGTGTTCTGTCGCGAAGGGAAGGGTGGCTATTTAGGCCGAAC
AACAAGTGCTTAGAAAGCTCAAGATCGACCGCGTCCAATGCCGCCGAGGA
AATAGGCGTCATAAACTACGCTTGTTCTGGAGGAAAACGACGGCAAAACG
TCGCCGCGGGCATGATGCTAGATATTGTACGGTGCACGAAACCACTTGAA
AGGCGATCTGACGGTAGGCTGGGCCCAAAGTGAATTTTAGGGGAACTGTT
GTTGACGCAACACCATGTGATCACCCTCGCCCCCTCGGCTGTACTTGGAC
GTAACCCAACAATACATCGGGTCGTAGGAGCTTAATCATGTGCTTATTGT
GTTTCTTTCATCGAAGTCTTGTCTTTACCACACCGTGTGGCACCTTTATG
TTGCACGCCCCAAAATGACGTCACATGCAATTTTAGGAGAGGGTTGGGTA
TCAATGTGGACAGGGCAGTAGGGGTGACGTCTTGTGCCAAAGCCTTTCGC
GCAGGAACGACCAAATCAAGGAACGCTACCTGTGAAACTTGGCTCTTTTT
TGGCTTTTGTGCTACGGGACGGGTTGTAAACGTCAGATACTTCTACGCAC
GCTGTCAACTAAAGGTTTCGGCCCCCGTATCGTGGTGTCTGTACAGCTGT
GCATTCGCTTGGCAACATTGCCTGCGACCCGAAACGCTTTCGCATCCTAC
ACGTATCCACCCGCAGCTAGATCGAGCAACGGGGACGAAGAGCTGATCTG
AATCGAGACCAGTGAGAGGAGCCAAGCGGAAACGAATTTCCAGGCTCGTC
GCGCCACGATACGTTGGCGGAAAGTCTGAAATTTTCGAAAATTCACCAGT
CGTGTTGGTGTCAGCCTTTTTTCGAACGACGGGGAGAAAGTACTTCATGA
CCATTGGCATTTCACGTACGTGCGTAGAGTGTGAGCTGGGTTAGAGTTTC
GAAGGAAATTGTCGTTCCGAAGAGAGGGGTAGGGGTAAAATTTCCTTCCC
GTGGTCACCACTACTTCAGCACACTTGTTGTAGCTCATGTTGGTTGCATG
CGACTATCTGTTGCGCAAACGTATCCTCTTTAGCATCTTTCCGAGTGCTG
GTGTGGCCTAGTGGGTGCAACGTAGAGACATTGAGGTTACCTGTTTCAGA
GTGGGACTTCTCGGGGAAGATTCTAGCCCCGCAGATTGGAGACATTACAA
TACGTCGTTCGGACTGGACCTATCACTATCCATATGGTGGCTGGTGGATA
GCGTCGCCCCGTTGGTCTCTTTCTCCTCTTCCCCTTCGGGACTCTGGTGG
TTTGTCAACGAGCCTTGATTACGTGAGCCAAGCTATACGGACATAGGTCC
TGGCAAGCCGACAGGGGCCGACACGTAAAGTACGGGGAGCTGCGCCAGCC
ATCGCATGTCGGGGGTATCACTACACCGATGTCTTCGTGTTCAGCACACG
CATGACGCTTGGTACGTTGGTGTCGCTTAGCATGTCCATCAGCCTTTCCA
ATCAAACCATGGGTGATTGCGGAGGCACTCCTTGAGTGTTATTTTGGTCG
GGTGAGCGCAGGGCCAATAGGGAACAGACAGTGGGGGTAAGAACCGAATG
AATGGCGTTGGAACGTCAGGGTCGGAGAAGGAGTGGGTTTGATGCAAGGA
CAACTGATACCTCTCTGAAGGAGGGTGTTCAAGCGCATCTTGGTAGTCGC
CGCATGCCCTCCACACGAGAAGACATTCGAAGTGAGATCACTGTAGTACA
GCAGTAGTGCATCGTTTCGGATCCTTAGTGGGCTAGCTGGTGAAGGATGC
CATCATAGCGGTTGGTGCAGAGTGCTCTGGTTCTGGCTCTCTACATGCTG
CGCCAGCTGGATGCGAACCTCTACTGTCGATTCCAGGTGGTTAAAGTGGA
TGTTTTTTGTACAAAGATTATTACACCAGTGTGCTGCAGCATGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1318:3542..7985+ >mRNA_E-fasciculatus_F_contig1318.2399.1 ID=mRNA_E-fasciculatus_F_contig1318.2399.1|Name=mRNA_E-fasciculatus_F_contig1318.2399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1644bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1318:3542..7985+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGCGGTTTTTCCAAGGGTGCAGCAGCAGGGGCGTCACGGCAGTCGTGG TGGCGGCAGAGGCACGGTTTCGTCTTCGTCGTCGTCCGTTTCCGCCGCCA AGGCAACGACCCCGCTGCGAACGGCAACCGCCAAGCAGATGGCGGTTTTT CCAAGGGTGCAGCAGCAGGGGCGTCACGGCAGTCGTGGTGGCGGCAGAGG CACGGTTTCGTCTTCGTCGTCGTCCGTTTCCGCCGCCAAGGCAACGACCC CGCTGCGAACGGCAACCGCCAAGCAGAGGGCATCCAGCGGCGCCCGGTCC TCTCCCAGGCTTCACCTCACACAAAAGCGAACCCCAGCTAACGCTAGACG CGGCTCTGGCCCAGTCGCAAACCAGTTCGCTTCCAACCAACGTCAGGCAA GCCCAAAGGGCATCCAGCGGCGCCCGGTCCTCTCCCAGGCTTCACCTCAC ACAAAAGCGAACCCCAGCTAACGCTAGACGCGGCTCTGGCCCAGTCGCAA ACCAGTTCGCTTCCAACCAACGTCAGGCAAGCCCAACCAAGGGACGGACT TCCTCTGTTGGTGCACACCGCGCCGGCAGTGGCGCTCGCACCACATCAAG GAAGGCAACGAAAACGGCCTCGGCAGCGGCAGCGGCGGGCGGAGGAGCGC GGAAAAAGTCGTCGCCGGCAGACGGCGTGGCGAAGGTCATGATTGATCTC AAGGGAGATGTCACCGCTATCATTGACAAGGCCATGGAGAAGGTGGAGAC TGAGTGCGGCACCTTTGCCAAGGGACGGACTTCCTCTGTTGGTGCACACC GCGCCGGCAGTGGCGCTCGCACCACATCAAGGAAGGCAACGAAAACGGCC TCGGCAGCGGCAGCGGCGGGCGGAGGAGCGCGGAAAAAGTCGTCGCCGGC AGACGGCGTGGCGAAGGTCATGATTGATCTCAAGGGAGATGTCACCGCTA TCATTGACAAGGCCATGGAGAAGGTGGAGACTGAGTGCGGCACCTTTGTG ACGACGGCGCTGGAAAGCTGCTCCGCTGGCGTCTCCGGGCGGGAGGGAGA CGACGAGACGGCGGCCGCGGCATTCCTCGAGATGGAGACAAGGCAGGCCT CGATGGCTACCCGGCGTTCGGATATGCTCAAGGAGGTCGATGACGACGGC GCTGGAAAGCTGCTCCGCTGGCGTCTCCGGGCGGGAGGGAGACGACGAGA CGGCGGCCGCGGCATTCCTCGAGATGGAGACAAGGCAGGCCTCGATGGCT ACCCGGCGTTCGGATATGCTCAAGGAGGTCGAGAGCAACGGCAGCAGTTT GTCAGCGGTCGTCGAGCGCTGTAGAGCTGCCCTGGACAGTCTGCAGCAGG CGGAGAGCCGCAAGCTCAAGAGCGGCGTGAGTGTACTACCCCCCCTCACA CAATTTCCGGTGTTCTGTCGCGAAGGGAAGGGTGGCTATTTAGGCCGAAC AACAAGTGCTTAGGAGCAACGGCAGCAGTTTGTCAGCGGTCGTCGAGCGC TGTAGAGCTGCCCTGGACAGTCTGCAGCAGGCGGAGAGCCGCAAGCTCAA GAGCGGCGTGAGTGTACTACCCCCCCTCACACAATTTCCGGTGTTCTGTC GCGAAGGGAAGGGTGGCTATTTAGGCCGAACAACAAGTGCTTAG back to top
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