mRNA_E-fasciculatus_F_contig13175.2395.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13175.2395.1
Unique NamemRNA_E-fasciculatus_F_contig13175.2395.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.440e-25
Identity = 57/67 (85.07%), Postives = 58/67 (86.57%), Query Frame = 2 
Query:   95 LVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCLLGS 295
            LVPLVI V DYVLTP   VERKSLSDLF SMSSGRLY QVEA+LKHYKVPVLLIE NPDKA CLLGS
Sbjct: 1021 LVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDKAFCLLGS 1087
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.210e-21
Identity = 51/60 (85.00%), Postives = 52/60 (86.67%), Query Frame = 2 
Query:   95 LVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDK 274
            LVPLVI V DYVLTP   VERKSLSDLF SMSSGRLY QVEA+LKHYKVPVLLIE NPDK
Sbjct:  930 LVPLVIAVGDYVLTPQICVERKSLSDLFQSMSSGRLYNQVEAMLKHYKVPVLLIEFNPDK 989
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A8H5LR26_9AGAR (ERCC4 domain-containing protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5LR26_9AGAR)

HSP 1 Score: 79.3 bits (194), Expect = 3.630e-15
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 2 
Query:   71 LTYCTRLALVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCL 286
            L +  +L ++P  +TV DY+LTP   VERKSLSDL  S SSGRLY Q E +  HYK PVLLIE   DKA  L
Sbjct:  809 LLHAAKLLVIPATLTVGDYILTPEICVERKSLSDLVSSFSSGRLYTQCERMSVHYKTPVLLIEFEEDKAFSL 880
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A6A0A349_HAELA (DNA repair endonuclease UVH1 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A349_HAELA)

HSP 1 Score: 73.9 bits (180), Expect = 4.530e-15
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:   95 LVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDK 274
            LVPL I V DYVL+P   VERK+L DL  S++SGRLY Q EA+ KHYK PVLLIE   D+
Sbjct:   42 LVPLTIEVGDYVLSPTMCVERKALPDLVSSLASGRLYSQAEAMCKHYKTPVLLIEFEGDR 101
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A7S1ZPP4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPP4_TRICV)

HSP 1 Score: 76.3 bits (186), Expect = 4.930e-15
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:   89 LALVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCLLGS 295
            + L P+ +TV D+VL+    VERKS+SDLF S +SGRLY Q E++ KHYK P LLIE +P K+ CL  S
Sbjct:   40 MRLAPVTLTVGDFVLSSVHCVERKSISDLFGSFASGRLYTQAESMSKHYKCPCLLIEFDPAKSFCLQNS 108
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A1Q3EM22_LENED (DNA repair protein rad16 n=3 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EM22_LENED)

HSP 1 Score: 79.0 bits (193), Expect = 4.940e-15
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:   71 LTYCTRLALVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKA 277
            L + + L ++P  +TV DY+LTP   VERKSLSDL  S +SGRLY Q E +  HYK+PVLLIE + DKA
Sbjct:  751 LLHASHLLVIPATLTVGDYILTPEICVERKSLSDLVSSFNSGRLYTQCELMSVHYKIPVLLIEFDEDKA 819
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: UPI001C7A71BF (uncharacterized protein n=2 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A71BF)

HSP 1 Score: 78.6 bits (192), Expect = 6.750e-15
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:   71 LTYCTRLALVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCL 286
            L +   L +VP  +TV DY+LTP   VERKSLSDL  S SSGRLY Q E +  HYK PVLLIE   DKA  L
Sbjct:  792 LLHAANLVVVPATLTVGDYILTPEICVERKSLSDLVSSFSSGRLYTQCELMSAHYKNPVLLIEFEEDKAFSL 863
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A2P6TJX7_CHLSO (DNA repair endonuclease UVH1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJX7_CHLSO)

HSP 1 Score: 78.6 bits (192), Expect = 6.790e-15
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:   89 LALVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCLLGS 295
            L +VPL + V DYVL+P   VERKS+SDL  S++SGRLY Q EA+ KHYK PVLLIE   DKA  L  S
Sbjct:  935 LEVVPLTLEVGDYVLSPEICVERKSISDLKGSLASGRLYHQAEAMTKHYKTPVLLIEFEGDKAFALQAS 1003
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BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: A0A061R063_9CHLO (DNA excision repair protein ERCC-4 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R063_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 9.230e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:  101 PLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCLLGS 295
            P+ + V DYVLTP   +ERK++ DL  S  SGRLY Q EA+ +HYK PVLLIE +PD+A  L G+
Sbjct:    1 PVTLEVGDYVLTPEICLERKAIPDLIQSFQSGRLYQQAEAMCRHYKTPVLLIEFDPDRAFALQGA 65
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Match: E1ZFN1_CHLVA (ERCC4 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZFN1_CHLVA)

HSP 1 Score: 78.2 bits (191), Expect = 9.270e-15
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:   89 LALVPLVITVDDYVLTPPTSVERKSLSDLFLSMSSGRLYVQVEAILKHYKVPVLLIEINPDKAVCLLGS 295
            L +VPL + V DYVL+P    ERKS+SDL  S++SGRLY Q EA+ KHYK PVLLIE   DKA  L  S
Sbjct:  955 LEVVPLTLEVGDYVLSPDICAERKSISDLRASLASGRLYHQAEAMTKHYKTPVLLIEFEGDKAFALQAS 1023
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13175.2395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE1.440e-2585.07ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FH45_ECTSI2.210e-2185.00ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8H5LR26_9AGAR3.630e-1556.94ERCC4 domain-containing protein n=1 Tax=Tetrapyrgo... [more]
A0A6A0A349_HAELA4.530e-1563.33DNA repair endonuclease UVH1 (Fragment) n=1 Tax=Ha... [more]
A0A7S1ZPP4_TRICV4.930e-1555.07Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1Q3EM22_LENED4.940e-1556.52DNA repair protein rad16 n=3 Tax=Lentinula edodes ... [more]
UPI001C7A71BF6.750e-1558.33uncharacterized protein n=2 Tax=Marasmius oreades ... [more]
A0A2P6TJX7_CHLSO6.790e-1560.87DNA repair endonuclease UVH1 n=1 Tax=Chlorella sor... [more]
A0A061R063_9CHLO9.230e-1555.38DNA excision repair protein ERCC-4 (Fragment) n=1 ... [more]
E1ZFN1_CHLVA9.270e-1559.42ERCC4 domain-containing protein n=1 Tax=Chlorella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13175contigE-fasciculatus_F_contig13175:1930..3570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size296
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13175.2395.1prot_E-fasciculatus_F_contig13175.2395.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13175 2100..3570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.840999-UTR-E-fasciculatus_F_contig13175:1929..19511622927820.840999-UTR-E-fasciculatus_F_contig13175:1929..1951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13175 1930..1951 -
1695995708.8436644-UTR-E-fasciculatus_F_contig13175:1929..19511695995708.8436644-UTR-E-fasciculatus_F_contig13175:1929..1951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13175 1930..1951 -
1622927820.859678-UTR-E-fasciculatus_F_contig13175:2095..20991622927820.859678-UTR-E-fasciculatus_F_contig13175:2095..2099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13175 2096..2099 -
1695995708.8553212-UTR-E-fasciculatus_F_contig13175:2095..20991695995708.8553212-UTR-E-fasciculatus_F_contig13175:2095..2099Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13175 2096..2099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.8806343-CDS-E-fasciculatus_F_contig13175:2099..21581622927820.8806343-CDS-E-fasciculatus_F_contig13175:2099..2158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 2100..2158 -
1695995708.8649871-CDS-E-fasciculatus_F_contig13175:2099..21581695995708.8649871-CDS-E-fasciculatus_F_contig13175:2099..2158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 2100..2158 -
1622927820.893616-CDS-E-fasciculatus_F_contig13175:2639..27631622927820.893616-CDS-E-fasciculatus_F_contig13175:2639..2763Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 2640..2763 -
1695995708.8730414-CDS-E-fasciculatus_F_contig13175:2639..27631695995708.8730414-CDS-E-fasciculatus_F_contig13175:2639..2763Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 2640..2763 -
1622927820.9072316-CDS-E-fasciculatus_F_contig13175:3483..35701622927820.9072316-CDS-E-fasciculatus_F_contig13175:3483..3570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 3484..3570 -
1695995708.8828313-CDS-E-fasciculatus_F_contig13175:3483..35701695995708.8828313-CDS-E-fasciculatus_F_contig13175:3483..3570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13175 3484..3570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13175.2395.1

>prot_E-fasciculatus_F_contig13175.2395.1 ID=prot_E-fasciculatus_F_contig13175.2395.1|Name=mRNA_E-fasciculatus_F_contig13175.2395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp
GGRRKAQASLRVVVDLREFRSVLPNLLHQACAGPVGHNGRRLRLDAPDLR
RTKEPVRLVPVHVVRQAVRAGGSNTEALQGARLADRDQP*
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mRNA from alignment at E-fasciculatus_F_contig13175:1930..3570-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13175.2395.1 ID=mRNA_E-fasciculatus_F_contig13175.2395.1|Name=mRNA_E-fasciculatus_F_contig13175.2395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1641bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:1930..3570- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCGTCGTAAGGCACAGGCGTCTCTCAGGGTAGTCGTCGACCTCCG
GGAGTTCCGCAGCGTTCTTCCTAACCTACTGCACCAGGTAGATTGTACAA
CGCGGCGGCAGGTTCACCTTCTTTTTTGTTTGCGTGTTAAGACCAGTAGC
AACAGCAACAACCATCGACAACAACGACGACACAATATCCAACAGCACAA
CAGCTGCGTCAGACTTGATTGTTCTCATAAAGTGTGTGCCCTCGTTTGAG
TGCATAGAGTGAACCGGTGTGTCCTGCGCGGGCGTCAGAAGGTATTGAGC
AGAGACCGGAACGATGGCTCATGTGAAATCAACAATATCAGGAACAGCAG
CAGCAGCACCAGCAGCAGTAGCAACACCTCGTACATCTCTTTCGAGGCAG
AAAGATCACGGAGTGCTGTTACGTGTGTCGTTGTGGGTGTGCGCTATGTT
ATCTTGTGCGAGCGTGTCATCGTTTGTCGTATGCCGTATTCCTCTGTCCG
CCTGAACTCTCACTCTTAGCCCCCTCCCCCGGCCGTCTCCCCCCCGTGCC
TCACACGCACACACCCTTCTAGTTCTCTCCCTTTCCCCGTCTCCACCTCA
CCCATCTCCATCTCCATCCTACGGCCTCCCGCCTCGTGCGTTCCACCATC
TCCTCGTCTGGCCTCCATGTCTCTGTCGTGCGTCACACAAATGTCTCCCT
TCTCCCCATCTCCGCCTGGTCAATGGTCTAGCGCAACCGCCTACACCAGG
CATGCAAAACATGAGAACCCCCCCCGCGACCCCCTCCCCCCCCGTTCTTC
AGCAAAGGCTTGCGCTGGTCCCGTTGGTCATAACGGTCGACGACTACGTC
TTGACGCCCCCGACCTCCGTCGAACGAAAGAGCCTGTCCGACTTGTTCCT
GTCCATGTCGTCCGGCAGGCTGTACGTGCAGGTTTGCAGTTATTTATTGA
GGGGAGTGGTGGCAATTGCCGGAGGAATCACCATGCTTGTAGTTGATGTT
TCGGTTGTTGGTGGTTGGGGTACCCGTCATGGTTGGAGTTGACTTCGTGC
CGTGGCCTGGATGCCGTTGTTGCTGATGGTGTTGTTGTCTTTGTGTTTTG
ATTGTTGCTATCAAGGATACCGTCTCTTTTAGTTTTAGCTACTTTCTTCA
TCGTTCACCTCCTTCTTTCTTGCTTGTTGCCACGAACTCCTCGGTATCCA
AGGCTGTTGCATCGAGGACTGTGGCGGAAGATGATAATCGCCTTAAAAAA
ATTGCGTCTTGCTCAGCAATTAAATCGTTAGACTGTTTGGTTCGGAGATG
ACAAAAAACTACAACATGCGAAAGCAAAACAGTCTCGTTCCGGGTCTATT
TGTGGAGGTGGCCTGTGGGTGCCGTCTATTCCTTCGTCGAATCGCGCGTG
TCATGTCCTCAGGTGGAAGCAATACTGAAGCACTACAAGGTGCCCGTCTT
GCTGATCGAGATCAACCCTGATAAGGTGCGTTGGTTGGCCTGCAGTTGTT
GATGAAATCCCCCGTCGTGCTTGTCGAGTTCAGCCGTTATATTATGCGCT
CGTACCATGGACCATCGTCACCGCTATTGGTTTCACCACTTACTTTCCTT
GCTTCGTCCCACCACGCAGGCGGTCTGTCTACTGGGGTCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13175:1930..3570-

>mRNA_E-fasciculatus_F_contig13175.2395.1 ID=mRNA_E-fasciculatus_F_contig13175.2395.1|Name=mRNA_E-fasciculatus_F_contig13175.2395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13175:1930..3570- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCGTCGTAAGGCACAGGCGTCTCTCAGGGTAGTCGTCGACCTCCG
GGAGTTCCGCAGCGTTCTTCCTAACCTACTGCACCAGGGGGGGCGTCGTA
AGGCACAGGCGTCTCTCAGGGTAGTCGTCGACCTCCGGGAGTTCCGCAGC
GTTCTTCCTAACCTACTGCACCAGGCTTGCGCTGGTCCCGTTGGTCATAA
CGGTCGACGACTACGTCTTGACGCCCCCGACCTCCGTCGAACGAAAGAGC
CTGTCCGACTTGTTCCTGTCCATGTCGTCCGGCAGGCTGTACGTGCAGGC
TTGCGCTGGTCCCGTTGGTCATAACGGTCGACGACTACGTCTTGACGCCC
CCGACCTCCGTCGAACGAAAGAGCCTGTCCGACTTGTTCCTGTCCATGTC
GTCCGGCAGGCTGTACGTGCAGGTGGAAGCAATACTGAAGCACTACAAGG
TGCCCGTCTTGCTGATCGAGATCAACCCTGAGTGGAAGCAATACTGAAGC
ACTACAAGGTGCCCGTCTTGCTGATCGAGATCAACCCTGA
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