mRNA_E-fasciculatus_F_contig13171.2391.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13171.2391.1
Unique NamemRNA_E-fasciculatus_F_contig13171.2391.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A6H5LAX6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAX6_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 5.050e-94
Identity = 161/177 (90.96%), Postives = 167/177 (94.35%), Query Frame = 1 
Query:    1 MASSPPGSSEGSSLLGNTTSTSLNQPFMAGYDSGGSPSSSPVFPADDAALPPSIPRTASELEAAEGARQEAVAAQAKIPEAPRAPLTGKGLLALSLATVFGYLCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVELLLDEQAGR 531
            MASSPPGSSE SSLL N TSTSL QPFMAGY++GGSPSS PV PAD AALPPSIPRTASELEAAE  RQEAVAAQAK+PEAPRAPLTGKGLLALSLATVFGYLC+GVL+YTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKP TKLFACFYILIGVAMVAAFLSKLVELLLD+QAGR
Sbjct:   43 MASSPPGSSERSSLLANATSTSLTQPFMAGYNNGGSPSS-PVLPAD-AALPPSIPRTASELEAAEEERQEAVAAQAKVPEAPRAPLTGKGLLALSLATVFGYLCIGVLVYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPVTKLFACFYILIGVAMVAAFLSKLVELLLDKQAGR 217
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A2E8JTU4_9BACT (Potassium transporter n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=A0A2E8JTU4_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 5.610e-14
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  316 GVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVE 504
            GV+ Y    G S +DA YFCV+TLTTVGYGDL+   PA +LF  FY+L GV ++AAF   LV 
Sbjct:   36 GVVFYHYTEGFSLIDAFYFCVITLTTVGYGDLTPVTPAGRLFTAFYVLAGVGIIAAFAQLLVR 98
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A365P0X3_9FLAO (Two pore domain potassium channel family protein n=1 Tax=Flavobacterium tibetense TaxID=2233533 RepID=A0A365P0X3_9FLAO)

HSP 1 Score: 73.2 bits (178), Expect = 1.600e-13
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:  286 LATVFGYLCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVELLLDEQAGR 531
            L T  G +  G ++Y  L G +++D+LYFCV+TLTTVGYGD S      KLF  FYI++G+ ++  F++ +     DE+  +
Sbjct:   20 LLTTIGIIVFGTIVYHYLEGWNYIDSLYFCVITLTTVGYGDFSPQTDEGKLFTIFYIILGLGIILGFINTVHNHYRDEKLNK 101
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A7C3K578_9BACT (Two pore domain potassium channel family protein n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=A0A7C3K578_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 2.930e-13
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  313 LGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVE 504
            +G + Y  + G+S+LD++YFCV+TLTTVGYGD++    A K+F  FYIL GVA++A+ LS L++
Sbjct:   90 IGAVFYHRVEGLSWLDSIYFCVITLTTVGYGDITPQTSAGKIFTIFYILFGVAIIASSLSYLLK 153
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A399YRK8_9CHLR (Two pore domain potassium channel family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399YRK8_9CHLR)

HSP 1 Score: 71.2 bits (173), Expect = 4.210e-13
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  307 LCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKL 498
            L +GVL+Y  L G S LDALYFCV+TL T+GYGDL+   P  KLF  FY++ G+ ++  F  ++
Sbjct:    2 LLVGVLVYHWLEGWSLLDALYFCVITLATIGYGDLTPTTPEAKLFTIFYVINGIGILLGFFDRI 65
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: UPI001A93772E (ion channel n=1 Tax=Enterococcus sp. MJM16 TaxID=2815321 RepID=UPI001A93772E)

HSP 1 Score: 72.0 bits (175), Expect = 4.450e-13
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  277 ALSLATVFGYLCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSK 495
            A+ LA +F  L +G + Y  + GMS+LDALYF V+TL TVGYGDLS H    KLF   Y+LIGV ++ A ++ 
Sbjct:   26 AIMLAVLF-ILMIGTIFYHNIEGMSYLDALYFSVMTLATVGYGDLSPHTALGKLFTIVYVLIGVGIITAVIAN 97
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: R2QX44_9ENTE (Ion_trans_2 domain-containing protein n=1 Tax=Enterococcus malodoratus ATCC 43197 TaxID=1158601 RepID=R2QX44_9ENTE)

HSP 1 Score: 71.2 bits (173), Expect = 9.240e-13
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  277 ALSLATVFGYLCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVELLLD 516
            A+ LA +F  L +G + Y  + GM++LDALYF V+TL TVGYGDLS H    KLF+  Y+L+GV ++ A ++     L++
Sbjct:   26 AIMLAVLF-ILMIGTVFYHNIEGMTYLDALYFSVMTLATVGYGDLSPHTALGKLFSIVYVLVGVGIITALIANFNRALVE 104
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: UPI001CC5E46A (two-pore potassium channel 5-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5E46A)

HSP 1 Score: 75.5 bits (184), Expect = 9.800e-13
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  304 YLCLGVLMYT----TLAGM---SFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVELLLDEQ 522
            YLCLGVL+Y+      +G    + +DALYFC+VT+ T+GYGD++   PATKLFAC ++L+G   +   LS +V  ++D Q
Sbjct:  141 YLCLGVLIYSFNRDNFSGFETHAMVDALYFCIVTMCTIGYGDIAPLTPATKLFACAFVLVGFGFIGILLSGMVNYVVDLQ 220
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A2E6BRS0_9BACT (Ion_trans_2 domain-containing protein n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=A0A2E6BRS0_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 1.090e-12
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  331 TTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKLVE 504
            TT    S +DA YFCV+TLTTVGYGDL+   PA +LF  FY+L GV ++AAF   LV 
Sbjct:   10 TTPKXFSXIDAFYFCVITLTTVGYGDLTPVTPAGRLFTAFYVLAGVGIIAAFAQLLVR 67
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BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Match: A0A2A8SH65_9BACI (Transporter n=3 Tax=Bacillus TaxID=1386 RepID=A0A2A8SH65_9BACI)

HSP 1 Score: 70.9 bits (172), Expect = 1.090e-12
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  301 GYLCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACFYILIGVAMVAAFLSKL-VELLLDEQAGR 531
            G L  G + Y+T+  M  +DALYF VVTLTTVGYGD S      KLF  FYI IG+ +VA F+ KL + + L ++  R
Sbjct:   33 GTLMTGTIFYSTVEKMRVIDALYFSVVTLTTVGYGDFSPKTDFGKLFTIFYIFIGLGLVAGFIRKLAINIQLPDRLSR 110
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13171.2391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAX6_9PHAE5.050e-9490.96EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2E8JTU4_9BACT5.610e-1455.56Potassium transporter n=1 Tax=Candidatus Saccharib... [more]
A0A365P0X3_9FLAO1.600e-1340.24Two pore domain potassium channel family protein n... [more]
A0A7C3K578_9BACT2.930e-1351.56Two pore domain potassium channel family protein n... [more]
A0A399YRK8_9CHLR4.210e-1350.00Two pore domain potassium channel family protein n... [more]
UPI001A93772E4.450e-1350.68ion channel n=1 Tax=Enterococcus sp. MJM16 TaxID=2... [more]
R2QX44_9ENTE9.240e-1345.00Ion_trans_2 domain-containing protein n=1 Tax=Ente... [more]
UPI001CC5E46A9.800e-1346.25two-pore potassium channel 5-like n=1 Tax=Telopea ... [more]
A0A2E6BRS0_9BACT1.090e-1256.90Ion_trans_2 domain-containing protein n=1 Tax=Cand... [more]
A0A2A8SH65_9BACI1.090e-1248.72Transporter n=3 Tax=Bacillus TaxID=1386 RepID=A0A2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13171contigE-fasciculatus_F_contig13171:1895..3461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue1.5e-76
Seed eggNOG ortholog2880.D7FN95
KEGG koko:K05389
KEGG TC1.A.1.7
EggNOG free text desc.potassium channel activity
EggNOG OGsKOG1418@1,KOG1418@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categoryother localisation
Exons3
Model size543
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13171.2391.1prot_E-fasciculatus_F_contig13171.2391.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13171 1895..3461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.3287086-CDS-E-fasciculatus_F_contig13171:1894..20581622927820.3287086-CDS-E-fasciculatus_F_contig13171:1894..2058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 1895..2058 -
1695995708.7311985-CDS-E-fasciculatus_F_contig13171:1894..20581695995708.7311985-CDS-E-fasciculatus_F_contig13171:1894..2058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 1895..2058 -
1622927820.348687-CDS-E-fasciculatus_F_contig13171:2540..28961622927820.348687-CDS-E-fasciculatus_F_contig13171:2540..2896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 2541..2896 -
1695995708.7435346-CDS-E-fasciculatus_F_contig13171:2540..28961695995708.7435346-CDS-E-fasciculatus_F_contig13171:2540..2896Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 2541..2896 -
1622927820.3679729-CDS-E-fasciculatus_F_contig13171:3438..34611622927820.3679729-CDS-E-fasciculatus_F_contig13171:3438..3461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 3439..3461 -
1695995708.7536821-CDS-E-fasciculatus_F_contig13171:3438..34611695995708.7536821-CDS-E-fasciculatus_F_contig13171:3438..3461Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 3439..3461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13171.2391.1

>prot_E-fasciculatus_F_contig13171.2391.1 ID=prot_E-fasciculatus_F_contig13171.2391.1|Name=mRNA_E-fasciculatus_F_contig13171.2391.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp
MASSPPGSSEGSSLLGNTTSTSLNQPFMAGYDSGGSPSSSPVFPADDAAL
PPSIPRTASELEAAEGARQEAVAAQAKIPEAPRAPLTGKGLLALSLATVF
GYLCLGVLMYTTLAGMSFLDALYFCVVTLTTVGYGDLSAHKPATKLFACF
YILIGVAMVAAFLSKLVELLLDEQAGRPFA*
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mRNA from alignment at E-fasciculatus_F_contig13171:1895..3461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13171.2391.1 ID=mRNA_E-fasciculatus_F_contig13171.2391.1|Name=mRNA_E-fasciculatus_F_contig13171.2391.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1567bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13171:1895..3461- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCCTCTCCGCCCGGCAGGTGTGTCGTGTGCTGCGTTTCCCGCCG
AACGCTCCTTGTGTAAATGACAGAACGCTCCTTGTGTTCCTGGAACGGGA
GTGCGGTGTGGGATTTGATTGATCCCCGGGTTTTTACCGCAAGTGAATTC
GGATCTAGACGATGTTGTGCCATTGAAGAGAACCCGATCCCCCGATAAGC
ACAGCCCAGAAGGAAGGGGAAGAAAGAGCAAGGAATGTGTCAAGTACGTC
AGCACGTCGAACCAGACGTGTGTCGCTTTTAGAGTCGGAACGAGTGGCGT
TTTGCGTCGAAAAGGGGAAGATGCGTGGAAACGTCAAAATCGTGAAATCT
ACTAACACCGTAGCAAAGAACGCCCTTTGGTGTAGAAGTAGAACAGAATC
GAAAATAGTTTTTGTGTCGTTTTTTGGAGTCGGAACAAGCGGTGTTCCAG
GTCGACAAGTGAAAAGATTCGTGGCTACCGGTCAAACTTCGAAATCGCCG
CACAAACTAACACCCCGCGCTGTTGCGGCCGCCGTTGACGCGCTCGCGTG
CAAACAAACCCGCAGCTCGGAGGGGTCCAGCCTCCTGGGCAACACCACCA
GCACCAGCCTGAACCAGCCCTTCATGGCCGGCTACGACAGCGGCGGCAGC
CCGTCGTCGTCCCCCGTCTTCCCCGCGGACGACGCGGCCTTGCCGCCGTC
GATACCCCGCACGGCCTCGGAGCTGGAAGCGGCGGAGGGCGCGAGGCAGG
AGGCGGTGGCCGCCCAGGCGAAGATCCCCGAGGCTCCTCGCGCGCCCCTC
ACCGGGAAGGGTTTGCTGGCCCTGTCGCTTGCCACCGTGTTCGGCTACCT
GTGCCTTGGGGTCCTGATGTACACGACCCTCGCGGGGATGAGCTTCTTGG
ACGCGCTGTACTTCTGCGTCGGTAGGGCGGGCGTTTCTTTTTTTATATCG
GTCGTTCGTTTTTTTTTCGCGGTTTACTACGTACAGAGTGCGTCGGAGGG
TTTGTATCGCGTTCTACTATTAATATGGTGCTTTTGCGCGTCTTGTTTTT
TGCATGCCCAAACATTTCGACCCTCGAACTGGCCTTCGTCTGCTCGTCGC
CACGGTTTGACGTTCCCGCTTTTACTATCTGTGTGTTTTTTTTCTTGTGG
CGCTGACATGGTTGTATTTGCTGGTCACCCCAGTCGACACACTTGCCTCA
GAATTACCAAACCGGTATGTATCCCCGCACATAGGTTTATTTTTGTTCCC
GACATCGTCTCTGCATGGGCGCTCCTCCCACGGATGAGCTACCGTGGTTT
GACGGACGAAAAGAGTACATGATGAGCAACACCGAAAACCCTCAACCTGA
CCCTCCCCATCAATCCCGTGTTGTGCTGGCGCGATCGCTTCCTTGCCTCC
CAGTTACCCTGACGACCGTGGGCTACGGGGACCTGAGCGCTCACAAGCCG
GCGACGAAGCTGTTCGCTTGTTTCTACATCCTCATCGGCGTGGCCATGGT
GGCAGCCTTTCTGTCGAAGCTCGTGGAGCTCCTTCTGGACGAGCAGGCAG
GCCGCCCGTTTGCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13171:1895..3461-

>mRNA_E-fasciculatus_F_contig13171.2391.1 ID=mRNA_E-fasciculatus_F_contig13171.2391.1|Name=mRNA_E-fasciculatus_F_contig13171.2391.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13171:1895..3461- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCCTCTCCGCCCGGCAGATGGCTTCCTCTCCGCCCGGCAGCTCG
GAGGGGTCCAGCCTCCTGGGCAACACCACCAGCACCAGCCTGAACCAGCC
CTTCATGGCCGGCTACGACAGCGGCGGCAGCCCGTCGTCGTCCCCCGTCT
TCCCCGCGGACGACGCGGCCTTGCCGCCGTCGATACCCCGCACGGCCTCG
GAGCTGGAAGCGGCGGAGGGCGCGAGGCAGGAGGCGGTGGCCGCCCAGGC
GAAGATCCCCGAGGCTCCTCGCGCGCCCCTCACCGGGAAGGGTTTGCTGG
CCCTGTCGCTTGCCACCGTGTTCGGCTACCTGTGCCTTGGGGTCCTGATG
TACACGACCCTCGCGGGGATGAGCTTCTTGGACGCGCTGTACTTCTGCGT
CGCTCGGAGGGGTCCAGCCTCCTGGGCAACACCACCAGCACCAGCCTGAA
CCAGCCCTTCATGGCCGGCTACGACAGCGGCGGCAGCCCGTCGTCGTCCC
CCGTCTTCCCCGCGGACGACGCGGCCTTGCCGCCGTCGATACCCCGCACG
GCCTCGGAGCTGGAAGCGGCGGAGGGCGCGAGGCAGGAGGCGGTGGCCGC
CCAGGCGAAGATCCCCGAGGCTCCTCGCGCGCCCCTCACCGGGAAGGGTT
TGCTGGCCCTGTCGCTTGCCACCGTGTTCGGCTACCTGTGCCTTGGGGTC
CTGATGTACACGACCCTCGCGGGGATGAGCTTCTTGGACGCGCTGTACTT
CTGCGTCGTTACCCTGACGACCGTGGGCTACGGGGACCTGAGCGCTCACA
AGCCGGCGACGAAGCTGTTCGCTTGTTTCTACATCCTCATCGGCGTGGCC
ATGGTGGCAGCCTTTCTGTCGAAGCTCGTGGAGCTCCTTCTGGACGAGCA
GGCAGGCCGCCCGTTTGCATGATTACCCTGACGACCGTGGGCTACGGGGA
CCTGAGCGCTCACAAGCCGGCGACGAAGCTGTTCGCTTGTTTCTACATCC
TCATCGGCGTGGCCATGGTGGCAGCCTTTCTGTCGAAGCTCGTGGAGCTC
CTTCTGGACGAGCAGGCAGGCCGCCCGTTTGCATGA
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