mRNA_E-fasciculatus_F_contig13171.2390.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13171.2390.1
Unique NamemRNA_E-fasciculatus_F_contig13171.2390.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13171.2390.1 vs. uniprot
Match: A0A6H5LAX6_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAX6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.110e-32
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:   52 AQAMGVEDPDTAVKTQGGSGATN----SAHQDSTGDNNESGVASRMNVEVGLGVFYFLLLVGVGTTVFMVYGHMSVIDAFYLTVVSSSTVGY 315
            AQAMGV+ PDTA+KTQ GSGATN    +A QD+ GDN++  + + +NVEVGLGVFYF+LLVGVGTTVFMVYGHMSVIDAFYLTVVSSSTVGY
Sbjct:  231 AQAMGVDYPDTAMKTQWGSGATNGGTPAAQQDTAGDNDDIALVNSINVEVGLGVFYFVLLVGVGTTVFMVYGHMSVIDAFYLTVVSSSTVGY 322
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13171.2390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAX6_9PHAE1.110e-3276.09EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13171contigE-fasciculatus_F_contig13171:1..1177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue5.5e-23
Seed eggNOG ortholog2880.D7FN95
KEGG koko:K05389
KEGG TC1.A.1.7
EggNOG free text desc.potassium channel activity
EggNOG OGsKOG1418@1,KOG1418@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCalcium-activated outward-rectifying potassium channel, putative
Ec32 orthologEc-15_003460.1
Exons3
Model size315
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13171.2390.1prot_E-fasciculatus_F_contig13171.2390.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13171 1..1177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927820.23676-CDS-E-fasciculatus_F_contig13171:0..1351622927820.23676-CDS-E-fasciculatus_F_contig13171:0..135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 1..135 -
1695995708.6996002-CDS-E-fasciculatus_F_contig13171:0..1351695995708.6996002-CDS-E-fasciculatus_F_contig13171:0..135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 1..135 -
1622927820.260293-CDS-E-fasciculatus_F_contig13171:765..8521622927820.260293-CDS-E-fasciculatus_F_contig13171:765..852Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 766..852 -
1695995708.7109115-CDS-E-fasciculatus_F_contig13171:765..8521695995708.7109115-CDS-E-fasciculatus_F_contig13171:765..852Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 766..852 -
1622927820.276039-CDS-E-fasciculatus_F_contig13171:1084..11771622927820.276039-CDS-E-fasciculatus_F_contig13171:1084..1177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 1085..1177 -
1695995708.7206745-CDS-E-fasciculatus_F_contig13171:1084..11771695995708.7206745-CDS-E-fasciculatus_F_contig13171:1084..1177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13171 1085..1177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13171.2390.1

>prot_E-fasciculatus_F_contig13171.2390.1 ID=prot_E-fasciculatus_F_contig13171.2390.1|Name=mRNA_E-fasciculatus_F_contig13171.2390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MFSPQEDLLVNLLKKNRAQAMGVEDPDTAVKTQGGSGATNSAHQDSTGDN
NESGVASRMNVEVGLGVFYFLLLVGVGTTVFMVYGHMSVIDAFYLTVVSS
STVGY
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mRNA from alignment at E-fasciculatus_F_contig13171:1..1177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13171.2390.1 ID=mRNA_E-fasciculatus_F_contig13171.2390.1|Name=mRNA_E-fasciculatus_F_contig13171.2390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1177bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13171:1..1177- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCTCTCCGCAGGAGGACCTTCTCGTGAACCTCCTGAAGAAGAACAG
GGCGCAGGCCATGGGGGTGGAAGATCCCGACACCGCCGTGAAGGTAAAGC
TGTGAGAGGTCAATGGCAGAACCGAAACAACAATATGTTGCGGTTCGTTT
CGTTTTGCGGCCTCCGCACACCCCCATACCATATGTGACATGTCCATAAA
AGACGGTGGTTTTCTGTCGTGGAGGGGCGAGACGCGCATCGTCGTGAGCC
CCGCGTGCCACCAACCAGTTGGAATTGCGCGGTGCAGCCATGACGATCGG
ATATCCTTTCTTTTTACAAGTACAGACACAGGGGGGCAGCGGCGCGACCA
ACAGCGCCCACCAGGACAGCACCGGCGACAACAACGAAAGCGGCGTGGCC
AGTAGAATGAATGTAAGAGCAACGATGCGGAGCTAGCTAGCTACGACTGC
GGTGCTGCCCTCCCCTGCGCGAACGACCCTGCCGCTGGTCCGGTGCGGCG
ATACGGCGACCGAGAAGATGAAACGGCCGAGCCCCCTCGATGTTTTCCGG
GTTTTTCTTGCTTCCTTGAGGGATTTCTTTCAACAAGCGGCCAGTCCTTC
CTCCTCCGACTCCGGCGATGATGCATACAGACGCGCGCTCGGCTCGGAGT
TTCTCGGCAGGTCATCTGCAGAGCAGCACAGCGACACGCGCTATCGGTTT
GGGCTACACAAGCTGTTCTGCGCTGCGCCAGCCACCGCGCGCCGCACGGC
ACGGCATTCATGCCTTTCCCATCTCACTTACGCGCGATCGATGAACCTCC
GGCACGGACGACACGCGAACCGAAGAACTAATGAACCCGCCTCCCCCCCC
CACAAGAGAAGATACAAGCGACCGACGGACGGCACCATCTAGGGTTCTGT
GTGATCTGATTTCCGTTCCGATCTCTCTCTCTCTCTCTCTCCCTCTCTTT
GCCTCTCCCTCTCCCTGCCCTGTGCCCTGTCTCTCTCTGTCTCCCCGGAC
TTGTCAACGGTCGTGTCGCGACGACGATGATCGACCGGACAGGTGGAGGT
GGGCCTGGGCGTCTTCTACTTTTTGCTGCTCGTGGGGGTGGGCACAACCG
TGTTCATGGTGTACGGCCACATGTCGGTGATCGACGCCTTCTATCTTACC
GTTGTGTCCTCATCGACGGTGGGGTAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13171:1..1177-

>mRNA_E-fasciculatus_F_contig13171.2390.1 ID=mRNA_E-fasciculatus_F_contig13171.2390.1|Name=mRNA_E-fasciculatus_F_contig13171.2390.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13171:1..1177- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCTCTCCGCAGGAGGACCTTCTCGTGAACCTCCTGAAGAAGAACAG
GGCGCAGGCCATGGGGGTGGAAGATCCCGACACCGCCGTGAAGATGTTCT
CTCCGCAGGAGGACCTTCTCGTGAACCTCCTGAAGAAGAACAGGGCGCAG
GCCATGGGGGTGGAAGATCCCGACACCGCCGTGAAGACACAGGGGGGCAG
CGGCGCGACCAACAGCGCCCACCAGGACAGCACCGGCGACAACAACGAAA
GCGGCGTGGCCAGTAGAATGAATACACAGGGGGGCAGCGGCGCGACCAAC
AGCGCCCACCAGGACAGCACCGGCGACAACAACGAAAGCGGCGTGGCCAG
TAGAATGAATGTGGAGGTGGGCCTGGGCGTCTTCTACTTTTTGCTGCTCG
TGGGGGTGGGCACAACCGTGTTCATGGTGTACGGCCACATGTCGGTGATC
GACGCCTTCTATCTTACCGTTGTGTCCTCATCGACGGTGGGGTATGTGGA
GGTGGGCCTGGGCGTCTTCTACTTTTTGCTGCTCGTGGGGGTGGGCACAA
CCGTGTTCATGGTGTACGGCCACATGTCGGTGATCGACGCCTTCTATCTT
ACCGTTGTGTCCTCATCGACGGTGGGGTAT
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