mRNA_E-fasciculatus_F_contig13164.2387.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13164.2387.1
Unique NamemRNA_E-fasciculatus_F_contig13164.2387.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13164.2387.1 vs. uniprot
Match: D7G5Q7_ECTSI (Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5Q7_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.390e-61
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:    1 MKVACCVLVWACALAARAAEAFVPALSGRAGIMSAAGRQASMSPAAAGRQNAFSHTSYGAPAQAPASRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAG 333
            MK+ACCVLVWACALAAR AEAFVPAL+GRAGIMSAAGRQASMSPAAAGRQNAFSHTSYG+PAQA +SRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAG
Sbjct:    1 MKLACCVLVWACALAARVAEAFVPALAGRAGIMSAAGRQASMSPAAAGRQNAFSHTSYGSPAQAQSSRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAG 111
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BLAST of mRNA_E-fasciculatus_F_contig13164.2387.1 vs. uniprot
Match: A0A7S2XUZ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUZ2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.480e-6
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  229 GASTTTMGLFGLGAPEIAVCIAVAALILGPDKM 327
            G S+  MGLFGLGAPEIAVC+ VAAL+LGPDK+
Sbjct:   61 GRSSIQMGLFGLGAPEIAVCVIVAALVLGPDKL 93
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BLAST of mRNA_E-fasciculatus_F_contig13164.2387.1 vs. uniprot
Match: A0A6V1V9D4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V9D4_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 4.550e-5
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  229 GASTTTMGLFGLGAPEIAVCIAVAALILGPDKMAG 333
            GA++  M LFGL APE+ VC+AVAALILGPDK+ G
Sbjct:   65 GAASLQMQLFGLSAPELLVCLAVAALILGPDKLIG 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13164.2387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5Q7_ECTSI1.390e-6194.59Tha4/Hcf106 protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A7S2XUZ2_9STRA1.480e-675.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1V9D4_HETAK4.550e-568.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13164contigE-fasciculatus_F_contig13164:6..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTha4/Hcf106 protein
Ec32 orthologEc-12_008760.1
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927819.7429485-CDS-E-fasciculatus_F_contig13164:5..1921622927819.7429485-CDS-E-fasciculatus_F_contig13164:5..192Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13164 6..192 -
1695995708.4493184-CDS-E-fasciculatus_F_contig13164:5..1921695995708.4493184-CDS-E-fasciculatus_F_contig13164:5..192Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13164 6..192 -
1622927819.7571697-CDS-E-fasciculatus_F_contig13164:743..8891622927819.7571697-CDS-E-fasciculatus_F_contig13164:743..889Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13164 744..889 -
1695995708.4627686-CDS-E-fasciculatus_F_contig13164:743..8891695995708.4627686-CDS-E-fasciculatus_F_contig13164:743..889Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13164 744..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13164.2387.1prot_E-fasciculatus_F_contig13164.2387.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13164 6..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13164.2387.1

>prot_E-fasciculatus_F_contig13164.2387.1 ID=prot_E-fasciculatus_F_contig13164.2387.1|Name=mRNA_E-fasciculatus_F_contig13164.2387.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=111bp
MKVACCVLVWACALAARAAEAFVPALSGRAGIMSAAGRQASMSPAAAGRQ
NAFSHTSYGAPAQAPASRWLSGRPSSGASTTTMGLFGLGAPEIAVCIAVA
ALILGPDKMAG
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mRNA from alignment at E-fasciculatus_F_contig13164:6..889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13164.2387.1 ID=mRNA_E-fasciculatus_F_contig13164.2387.1|Name=mRNA_E-fasciculatus_F_contig13164.2387.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=884bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13164:6..889- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGTTGCGTGCTGCGTGTTGGTGTGGGCTTGCGCCTTGGCGGCGAG
GGCGGCGGAGGCGTTCGTGCCGGCGCTTTCGGGCCGCGCCGGGATCATGT
CGGCGGCAGGCCGCCAAGCATCCATGTCGCCTGCGGCTGCAGGGAGGTGA
GGAGCTGCTGGGTCGTCGAAATTGCCGTTGCTCATTTGTTGTTGTTAATC
TGCAGCTTGAAGGGCGACCCAGCTGGGCTTTTGTCCGTTTGGTCTTGACC
TGCTTTTCTTTGTTGAGTGAGGTAGTATCCGCTGTCACTCTCCAACCCCC
CAAAAGTGGAGTTTTGAGAGAGGCGTCGTGGTGGTGCTGATGTAGTACTG
GGAGCGCCACCTTGTCCTGCGGCCAACCTGCCGAATGATCAAGTCTGTGG
GCGCCTCGTCGATTTTCGTACCAACTCCGTATTTCACGACAGCAGCGACG
ATAAGCGGTGCAATATTGTTCAATCCCGCCGCACCCATTTCATCACAACG
CATCGCATGAACCGTGACGTTTTTTTTCTGCCTGACATGTTTCTCTCCTG
TCTGCCGGTCCTAAGTAATTTGTTTCCCGCGACCCCTTTATTCCATTAAT
GCTGATGCCGCGTTCCTTCTCTACCCGGTCACCGTTTGTAGCCAAAATGT
TAAACCTTCCTTCAACACATGCCCTACTCGTTCCCGCTCCCGCACAGGCA
AAACGCGTTTTCGCACACGTCTTACGGCGCGCCGGCACAAGCACCGGCCT
CGAGGTGGCTGAGCGGTCGACCTTCCTCCGGCGCTAGCACAACAACCATG
GGCCTCTTCGGCCTTGGCGCTCCGGAGATCGCGGTGTGCATTGCCGTCGC
CGCGCTCATCCTCGGTCCCGACAAGATGGCAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13164:6..889-

>mRNA_E-fasciculatus_F_contig13164.2387.1 ID=mRNA_E-fasciculatus_F_contig13164.2387.1|Name=mRNA_E-fasciculatus_F_contig13164.2387.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13164:6..889- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGGTTGCGTGCTGCGTGTTGGTGTGGGCTTGCGCCTTGGCGGCGAG
GGCGGCGGAGGCGTTCGTGCCGGCGCTTTCGGGCCGCGCCGGGATCATGT
CGGCGGCAGGCCGCCAAGCATCCATGTCGCCTGCGGCTGCAGGGAGATGA
AGGTTGCGTGCTGCGTGTTGGTGTGGGCTTGCGCCTTGGCGGCGAGGGCG
GCGGAGGCGTTCGTGCCGGCGCTTTCGGGCCGCGCCGGGATCATGTCGGC
GGCAGGCCGCCAAGCATCCATGTCGCCTGCGGCTGCAGGGAGGCAAAACG
CGTTTTCGCACACGTCTTACGGCGCGCCGGCACAAGCACCGGCCTCGAGG
TGGCTGAGCGGTCGACCTTCCTCCGGCGCTAGCACAACAACCATGGGCCT
CTTCGGCCTTGGCGCTCCGGAGATCGCGGTGTGCATTGCCGTCGCCGCGC
TCATCCTCGGTCCCGACAAGATGGCAGGCGCAAAACGCGTTTTCGCACAC
GTCTTACGGCGCGCCGGCACAAGCACCGGCCTCGAGGTGGCTGAGCGGTC
GACCTTCCTCCGGCGCTAGCACAACAACCATGGGCCTCTTCGGCCTTGGC
GCTCCGGAGATCGCGGTGTGCATTGCCGTCGCCGCGCTCATCCTCGGTCC
CGACAAGATGGCAGGC
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