mRNA_E-fasciculatus_F_contig13114.2360.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13114.2360.1
Unique NamemRNA_E-fasciculatus_F_contig13114.2360.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13114.2360.1 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.980e-7
Identity = 32/46 (69.57%), Postives = 33/46 (71.74%), Query Frame = 3 
Query:  234 MPKDKHRRSCSKKSGRSSKXXXXXXXXADSSSRGPALRRLRIPDEP 371
            MPKDKHRRSCSKKSGRSS             SRGPA+RRLRIPDEP
Sbjct:    1 MPKDKHRRSCSKKSGRSSSKNSNN---GTEDSRGPAVRRLRIPDEP 43
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BLAST of mRNA_E-fasciculatus_F_contig13114.2360.1 vs. uniprot
Match: A0A6H5KFL8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 7.020e-6
Identity = 31/46 (67.39%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:  234 MPKDKHRRSCSKKSGRSSKXXXXXXXXADSSSRGPALRRLRIPDEP 371
            MPKDKHRRSCSKKSGRS+          D   RGPAL RLRIPDEP
Sbjct:    1 MPKDKHRRSCSKKSGRSAAKNNRNNGTED--RRGPALGRLRIPDEP 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13114.2360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN15_ECTSI4.980e-769.57Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5KFL8_9PHAE7.020e-667.39RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13114contigE-fasciculatus_F_contig13114:1678..3504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size373
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13114.2360.1prot_E-fasciculatus_F_contig13114.2360.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13114 1684..2433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927816.1915584-UTR-E-fasciculatus_F_contig13114:1677..16831622927816.1915584-UTR-E-fasciculatus_F_contig13114:1677..1683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13114 1678..1683 -
1695995706.7611303-UTR-E-fasciculatus_F_contig13114:1677..16831695995706.7611303-UTR-E-fasciculatus_F_contig13114:1677..1683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13114 1678..1683 -
1622927816.225953-UTR-E-fasciculatus_F_contig13114:2433..24791622927816.225953-UTR-E-fasciculatus_F_contig13114:2433..2479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13114 2434..2479 -
1695995706.8086-UTR-E-fasciculatus_F_contig13114:2433..24791695995706.8086-UTR-E-fasciculatus_F_contig13114:2433..2479Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13114 2434..2479 -
1622927816.2352865-UTR-E-fasciculatus_F_contig13114:3459..35041622927816.2352865-UTR-E-fasciculatus_F_contig13114:3459..3504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13114 3460..3504 -
1695995706.8165405-UTR-E-fasciculatus_F_contig13114:3459..35041695995706.8165405-UTR-E-fasciculatus_F_contig13114:3459..3504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13114 3460..3504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927816.2021198-CDS-E-fasciculatus_F_contig13114:1683..18531622927816.2021198-CDS-E-fasciculatus_F_contig13114:1683..1853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13114 1684..1853 -
1695995706.7802463-CDS-E-fasciculatus_F_contig13114:1683..18531695995706.7802463-CDS-E-fasciculatus_F_contig13114:1683..1853Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13114 1684..1853 -
1622927816.2165494-CDS-E-fasciculatus_F_contig13114:2327..24331622927816.2165494-CDS-E-fasciculatus_F_contig13114:2327..2433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13114 2328..2433 -
1695995706.7987742-CDS-E-fasciculatus_F_contig13114:2327..24331695995706.7987742-CDS-E-fasciculatus_F_contig13114:2327..2433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13114 2328..2433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13114.2360.1

>prot_E-fasciculatus_F_contig13114.2360.1 ID=prot_E-fasciculatus_F_contig13114.2360.1|Name=mRNA_E-fasciculatus_F_contig13114.2360.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
MTPTDTQPPTPLQTLSFHREHGSRRGTRTVSRQLRGNLRVRFTAGSSNAK
GQTPSLLQQEVGPLLQEQHLQQRRRRQQQSRPCAPPTPNPR*
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mRNA from alignment at E-fasciculatus_F_contig13114:1678..3504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13114.2360.1 ID=mRNA_E-fasciculatus_F_contig13114.2360.1|Name=mRNA_E-fasciculatus_F_contig13114.2360.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1827bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13114:1678..3504- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTCTGGTGTGCGTTCATCTTCTTCCTGCGTCTCCCTTGCAGCAGGTAGG
GCGCGTGTGTGTGGGTGTCAGGCGGTTAATGACCCCTCAACACGAGACAA
AACCTAGTAGATACAAAAGAGAGGAGAAACCTCTTGCGAGGCGGGGTGTT
TTTAGGCACTCATGTTGTTGTGGCTGCTTCATTTAGCCCTCGTCGCAAAG
GTCCTTCATACAAACAAAGCTGTGGGGCGCAGAAAACTCTCCTCCCGTAG
ATCTATTGACTAGTATTGTTGGTGCCGAATTGGACACCACTCATCTCATC
ATGCGTACAATATCTTCACTCAAGGTTGCTCGGCGGGGTGTTTTTATCAG
AGGCTCCGCACTTCGCATGCCCCATGATAAATGATTCCCTCTCTGGATTG
TACTGAAAACCCAGGCCCCAAACCGCTCACAAATCATTTGAACTATTGCG
AAGGTAACGGAATGCTTCCTTTCGTAATCCAGAGATGGGTGCAAAGCCCA
ACGCCGATTGTTGGACTCTTCCGGGACTAGTACGCATACATCCGATCCGT
GTATCATCATGACATATGAACGAATAGCCCAGCAACCAGCCGGGGGATCG
TATGTGCAAGTTGTACATTCAACGGTCCGTTTAGACAATTCTGGAACTGT
AACTCAGCAACTGTTTGGTCATTATTTTTCGTGCCGCTGCCGCCGGCCCG
TGGTGTGTGTGTGGTACACCTAAAAGGTTTTAAGTTTCAACCATGGCTAC
ATACGACGTAATCTCTTGGGAACGCTGTTGCCCAGCGGATTTGACCTTGT
CTACATAGATGTCAAATTGTTCAGCGGCGTAGGACAAGCCATTATTGTAT
GTAGCGCTGCGGAGTTTTTCTCGAGTGTATGATCGTGAGAGAGAATTATA
TCGCAATCATGCACCTCATACAACGGGGAAAAAACACACCGCCCTTGTTG
TAAGTTCAATATGGCCGAAGAAAGAAGAGGCTGACCACGTAATTGCGCCG
CTGTCTTACGTTTACGAACATCAAGGAACAAACGTGTCTCTGATGTCGGT
GAAGTTCGAGGGTGAAAGGTGATGACACCCACAGACACACAACCACCCAC
ACCACTGCAAACTCTCTCCTTCCATCGAGAACACGGGAGCAGGCGCGGCA
CCCGGACAGTCTCCAGACAGCTGAGAGGTGAGCGTGTTTGGTGGGCTGGG
TCGAGAGCTAGACGGCCACCGACTGCAGCGCTGCTGTTGTGCAGGGTGGC
GGCGAGAGTTTTGAAAGTGCTTGCTGGGCGGTATGTTTCGCATCATGTGT
GGGCGGAGCGTGTAGCAAAACAAGCTTAGACACAGAGCCACAGGCTCCAG
CTAGCCAATGCCGTAGCCGCCGCCAGTGTAGCATCGACTCGGCTGTGCTC
TTCGCTTTCTCTCGGTCTCTCTCTTTGATCTTGTGTGGCTTGCGCCACTT
GGTCGTGCGCAGACTCTCAATCAGCAGCCTCACCGCAAAGAAGAGCGGAG
AGAGTCAAATACATGAAAAGACAACCGCTGGATTGCTGCTCTCGCATGCA
TCCTGGCAGGCAGTAGCAGCAGCAGCACACACAGCACGTACGCTCCCTTC
GCCTCGCCCCCATGCGCTCCCTTCACCTCGCCCCCATGCTGGTCGTCCAA
GGCAATCTTCGCGTTAGGTTTACGGCCGGGAGTTCGAATGCCAAAGGACA
AACACCGTCGCTCTTGCAGCAAGAAGTCGGGCCGCTCCTCCAAGAACAAC
ACCTCCAACAACGGCGGCGCCGACAGCAGCAGTCGAGGCCCTGCGCTCCG
CCGACTCCGAATCCCCGATGAGCCGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13114:1678..3504-

>mRNA_E-fasciculatus_F_contig13114.2360.1 ID=mRNA_E-fasciculatus_F_contig13114.2360.1|Name=mRNA_E-fasciculatus_F_contig13114.2360.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13114:1678..3504- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACACCCACAGACACACAACCACCCACACCACTGCAAACTCTCTCCTT
CCATCGAGAACACGGGAGCAGGCGCGGCACCCGGACAGTCTCCAGACAGC
TGAGAGATGACACCCACAGACACACAACCACCCACACCACTGCAAACTCT
CTCCTTCCATCGAGAACACGGGAGCAGGCGCGGCACCCGGACAGTCTCCA
GACAGCTGAGAGGCAATCTTCGCGTTAGGTTTACGGCCGGGAGTTCGAAT
GCCAAAGGACAAACACCGTCGCTCTTGCAGCAAGAAGTCGGGCCGCTCCT
CCAAGAACAACACCTCCAACAACGGCGGCGCCGACAGCAGCAGTCGAGGC
CCTGCGCTCCGCCGACTCCGAATCCCCGATGAGCAATCTTCGCGTTAGGT
TTACGGCCGGGAGTTCGAATGCCAAAGGACAAACACCGTCGCTCTTGCAG
CAAGAAGTCGGGCCGCTCCTCCAAGAACAACACCTCCAACAACGGCGGCG
CCGACAGCAGCAGTCGAGGCCCTGCGCTCCGCCGACTCCGAATCCCCGAT
GA
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