mRNA_E-fasciculatus_F_contig13111.2359.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13111.2359.1
Unique NamemRNA_E-fasciculatus_F_contig13111.2359.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5KLK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.740e-27
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 2 
Query:  179 MLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVDDAELCALL 367
            ML+ MTGPRR ASG+LT+ KSDYGN KIMRFLSP+ GGDDNLIVEETPA DVHV+DAEL A L
Sbjct:    1 MLQFMTGPRRHASGILTIPKSDYGNPKIMRFLSPHAGGDDNLIVEETPAEDVHVEDAELGAYL 63
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5JUE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE1_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.360e-25
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 2 
Query:  155 FQESFWCSMLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVDDAELCALL 367
            FQ  FW SML+ MTGPRR ASG+LT+  SDYGN KIMRFLSP+ GG+DNL+VEETPA DVHV+D++L A L
Sbjct:  249 FQVGFWYSMLQFMTGPRRHASGILTIPNSDYGNPKIMRFLSPHAGGNDNLVVEETPAEDVHVEDSDLGAYL 319
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.890e-24
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2 
Query:  167 FWCSMLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVDDAEL 355
            FW SML+ MTGPRR ASG+LT+ KSD+GN KIMRFLSPY GG+DNL+VEETPA DVHV+D++L
Sbjct:  302 FWNSMLQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVHVEDSDL 364
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.290e-23
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 2 
Query:  155 FQESFWCSMLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVD 343
            FQE FW SML+ MTGPRR  SG+LT+ KSDYGN KIMRFLSP+ GG DNL+VEETPA DVHV+
Sbjct:  315 FQEGFWYSMLQFMTGPRRHVSGILTIPKSDYGNPKIMRFLSPHAGGKDNLVVEETPAEDVHVE 377
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.490e-23
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 2 
Query:  155 FQESFWCSMLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADV 334
            FQE FW SML+ MTGPRR ASG+LT+ KSD+GN KIMRFLSPY GG+DNL+VEETPA DV
Sbjct:   80 FQEGFWYSMLQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDV 139
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5L7R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.220e-23
Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = 2 
Query:   83 TREHRVQVHEEGEGVGQHYQR-------QGI--------------FQESFWCSMLE-VMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHV 340
            TRE RVQVHEE EGVG+ +QR       +GI               Q S W  + E  M GPRR ASG+L + KSD+GN KIMRFLSPY GG+DNL+VEETPA DVH+
Sbjct:  243 TRERRVQVHEESEGVGEAFQRRVQLHKREGIPGRAGAVNNFVHVESQRSCWFGLKERFMAGPRRHASGILIIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVHL 350
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BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5KWC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.910e-23
Identity = 49/59 (83.05%), Postives = 51/59 (86.44%), Query Frame = 2 
Query:  191 MTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVDDAELCALL 367
            MTGPRR ASGLLT+AKS YGN KIMR LSPY  GDDNLIVE+TPAADVHVDDAEL A L
Sbjct:    1 MTGPRRIASGLLTIAKSHYGNPKIMRVLSPYACGDDNLIVEDTPAADVHVDDAELGAFL 59
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5JV29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV29_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.430e-23
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 2 
Query:  179 MLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVDDAELCALL 367
            + + MTGPRR ASG+LT+ KSD+GN KIMRFLSPY GG+DNL+VEETPA DVHV+D++L A L
Sbjct:   83 LAQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVHVEDSDLGAYL 145
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5K3D5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.580e-22
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 2 
Query:  179 MLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPAADVHVDDAELCALL 367
            ML  MTGPRR ASGLLT+AKS YGN KIMR LSP+  GDDNL VE+TPAA VHVDDAEL A L
Sbjct:    1 MLRFMTGPRRIASGLLTIAKSHYGNPKIMRLLSPHACGDDNLSVEDTPAAGVHVDDAELGAFL 63
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Match: A0A6H5KA09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.410e-22
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 2 
Query:  155 FQESFWCSMLEVMTGPRREASGLLTVAKSDYGNSKIMRFLSPYTGGDDNLIVEETPA 325
            FQE FW SML+ MTGPRR ASG+LT+ KSDYGN KIMRFLSP+ GG+DNL+VEETPA
Sbjct:  162 FQEKFWYSMLQFMTGPRRIASGILTIPKSDYGNPKIMRFLSPHAGGNDNLVVEETPA 218
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13111.2359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLK7_9PHAE8.740e-2779.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUE1_9PHAE1.360e-2570.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X8_9PHAE2.890e-2474.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ3_9PHAE1.290e-2374.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Q8_9PHAE1.490e-2376.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R4_9PHAE2.220e-2354.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWC1_9PHAE5.910e-2383.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV29_9PHAE6.430e-2369.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D5_9PHAE1.580e-2276.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA09_9PHAE9.410e-2277.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13111contigE-fasciculatus_F_contig13111:693..2646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size410
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.7233362-CDS-E-fasciculatus_F_contig13111:692..9351622927815.7233362-CDS-E-fasciculatus_F_contig13111:692..935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13111 693..935 -
1695995706.7374961-CDS-E-fasciculatus_F_contig13111:692..9351695995706.7374961-CDS-E-fasciculatus_F_contig13111:692..935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13111 693..935 -
1622927815.7324195-CDS-E-fasciculatus_F_contig13111:2481..26461622927815.7324195-CDS-E-fasciculatus_F_contig13111:2481..2646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13111 2482..2646 -
1695995706.7484338-CDS-E-fasciculatus_F_contig13111:2481..26461695995706.7484338-CDS-E-fasciculatus_F_contig13111:2481..2646Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13111 2482..2646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13111.2359.1prot_E-fasciculatus_F_contig13111.2359.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13111 693..2646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13111.2359.1

>prot_E-fasciculatus_F_contig13111.2359.1 ID=prot_E-fasciculatus_F_contig13111.2359.1|Name=mRNA_E-fasciculatus_F_contig13111.2359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
MLYTRSSRRLYCTPRTTSPLPRPMALAHTRASRASARGRRGRGAALPTPG
HIPREFLVLHAGGHDGPASRSLWTPDRRQVGLRELQDHALPVPVHRRRRQ
PHRGGDPGRRRARRRCRALRTSLVTLAIVQFVFLFG
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mRNA from alignment at E-fasciculatus_F_contig13111:693..2646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13111.2359.1 ID=mRNA_E-fasciculatus_F_contig13111.2359.1|Name=mRNA_E-fasciculatus_F_contig13111.2359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13111:693..2646- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTACACCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGAC
ATCGCCGCTCCCCCGACCAATGGCACTGGCACACACGAGAGCATCGCGTG
CAAGTGCACGAGGAAGGCGAGGGCGTGGGGCAGCACTACCAACGCCAGGG
CATATTCCAAGAGAGGTGAGCTTTCCTCAACCTCAACTGAAGGGGGAGTA
TGTCTCCACGTAATCTACATGGCGGGCGGTTCTGCTGTTTACCAAATTTG
ACACGTGGTGGAATGAGCTTATTCTCTCCGGTTGAGCATAAAGTCAAGTA
CAACGTACTCGCTGTTTTGCTGGCCGTCGTTGCCGAATCTGGGTGTGGTT
TTCTCCATTGCATCGTCGCGCGGGGTGTTCTTGATTTTAACTAGCGATCG
TTTGGAGTTGGCAGCAATTTTGTGCACGTCGAGAGGCCGCGGTCCTGCTG
GTTTGAAGGAGCAGAAAGGTATGCGTGACAACACGCATGCAGTGAGTGCC
TCCCTGTAGTCTCATGATTTGTTTACTCCGAAGTATTGTTTCGTGCAGAT
GCAGTTTAGGCCTGACGTATTCCGTTTGCTTCTGGACGTTTCGGAATTCC
CCGATTAGAGTAACCCCGGGGGTGTTTCGTTTTTTCAGACCCCCACCCCA
CCTCCTACGCTTGCGCTGTTGCCAACACAATCGCTCACCTCCATGTTGTA
CGTCACGGAACAAAACAGTGTTATTCGAGCGAAGCGAGATTTCTAATCTC
GCCTGAGGTCTCACCGCAATAATAGGCTCCATGCAGGAAAAAAAAAATCT
ACGCCCACCCGCGTGTCTGTACGTTTAATCTAGGGTACATGACTTGATTT
TAGACTACGGGGGTCCGTGTTCAACTAACTGCCAGCAAACGAGATGAGCA
CATGAGCACAGCAGCACAACATTAGTTCTCGAAACCCAGGATGCCGATCG
TCATCGCACCACTTCGAGCGTGTACTCCATTGTGGTATCTCTGGGCGTGA
CAGTTGTGTTGGGCTTGGGTCCTGGGTGTGGCGAGAGCATCGTGCCGGTG
TGAACTCCAGTTTGGCGCTTTCGCCTGTAATGCCGACTGCTGCTGCTACT
GTGCCCGGGGGCAGAAAATTGACGGCACCATGCTCTCGCTACACACAGGA
CCCAAGCCCAACACAACTGCCACGCCCAGAGATATCGCAATGGAGCACAC
GCTCGAAGTGGTGCGATGACGATTGGTGCGCTAGGTGACGAGAACGGACT
TGCGTAGCTACAGCAGTGTAGTAGCTTATTGTTTTTCGCTGGCACAGCTA
GGCAGCAGTTGGAAAAAAAAAAAGAACAGGGGAGTCAGCAATGCGGGTGG
TATGCCGATGTGTGACCACGAACTCGGGATATGGGGGGGGGGGAGAGTAC
CCGGCTACGTCAAAGTTAACCTTTTACTCGCTCTCTCACCACCAGCGCAC
AGCTAGCTCAAGTGTGTGGTGTTTGCACTCCGTTTCCGCCCGTGGACGCA
CACCATCTGACGACAGGTACATCTATCATCTGTCGCTCGTTTTAGCGACA
GCTACTATATCTTTCTCATGCTCTTCATGTTCGTCACCCATTTTGTTTGT
CACCCCACCTAACCGAATTTTCATCTACTCTGAATCAAACATGAACTTTT
TATTTCATGTCGTTGCGCTTCCATGCTTTCTCTTTCCCTTTCCTTCCGTG
CTTTGGACCAGTTTCTGGTGCTCCATGCTGGAGGTCATGACGGGCCCGCG
TCGCGAAGCCTCTGGACTCCTGACCGTCGCCAAGTCGGACTACGGGAACT
CCAAGATCATGCGCTTCCTGTCCCCGTACACCGGCGGAGACGACAACCTC
ATCGTGGAGGAGACCCCGGCCGCAGACGTGCACGTCGACGATGCCGAGCT
CTGCGCACTTCTCTGGTTACCCTGGCTATAGTTCAATTCGTATTTCTTTT
TGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13111:693..2646-

>mRNA_E-fasciculatus_F_contig13111.2359.1 ID=mRNA_E-fasciculatus_F_contig13111.2359.1|Name=mRNA_E-fasciculatus_F_contig13111.2359.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13111:693..2646- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTGTACACCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGAC
ATCGCCGCTCCCCCGACCAATGGCACTGGCACACACGAGAGCATCGCGTG
CAAGTGCACGAGGAAGGCGAGGGCGTGGGGCAGCACTACCAACGCCAGGG
CATATTCCAAGAGAGATGTTGTACACCAGGTCGTCACGCCGGCTCTACTG
CACGCCGCGAACGACATCGCCGCTCCCCCGACCAATGGCACTGGCACACA
CGAGAGCATCGCGTGCAAGTGCACGAGGAAGGCGAGGGCGTGGGGCAGCA
CTACCAACGCCAGGGCATATTCCAAGAGAGTTTCTGGTGCTCCATGCTGG
AGGTCATGACGGGCCCGCGTCGCGAAGCCTCTGGACTCCTGACCGTCGCC
AAGTCGGACTACGGGAACTCCAAGATCATGCGCTTCCTGTCCCCGTACAC
CGGCGGAGACGACAACCTCATCGTGGAGGAGACCCCGGCCGCAGACGTGC
ACGTCGACGATGCCGAGCTCTGCGCACTTCTCTGGTTACCCTGGCTATAG
TTCAATTCGTATTTCTTTTTGGATTTCTGGTGCTCCATGCTGGAGGTCAT
GACGGGCCCGCGTCGCGAAGCCTCTGGACTCCTGACCGTCGCCAAGTCGG
ACTACGGGAACTCCAAGATCATGCGCTTCCTGTCCCCGTACACCGGCGGA
GACGACAACCTCATCGTGGAGGAGACCCCGGCCGCAGACGTGCACGTCGA
CGATGCCGAGCTCTGCGCACTTCTCTGGTTACCCTGGCTATAGTTCAATT
CGTATTTCTTTTTGGA
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