mRNA_E-fasciculatus_F_contig1311.2358.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1311.2358.1
Unique NamemRNA_E-fasciculatus_F_contig1311.2358.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: D8LBC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC6_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 5.250e-54
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query:    1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ
Sbjct:  246 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 337          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S4E7C5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S4E7C5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.620e-41
Identity = 71/92 (77.17%), Postives = 87/92 (94.57%), Query Frame = 1
Query:    1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            +NDLIRHN VVFS+G+ +L+VLP L DF+PEARLNLVIY+L+H+G+QEA++LIKD+EPSTPQEYILKGVVNAS+GQA GSREH+KMAQQ+FQ
Sbjct:  335 SNDLIRHNRVVFSQGEGALQVLPRLADFVPEARLNLVIYHLRHDGMQEAHELIKDVEPSTPQEYILKGVVNASVGQALGSREHVKMAQQFFQ 426          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S2RXW2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXW2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.330e-41
Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query:    4 NDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            N+LIRHN VVFS G+ +L+VLPPLVD IPEARLNLVIYYL+HEG+QEAY+LIKDLEPSTP EYILK VVNAS+GQ  GSREH+KMAQQ+FQ
Sbjct:  383 NNLIRHNQVVFSMGEGALQVLPPLVDVIPEARLNLVIYYLRHEGIQEAYELIKDLEPSTPSEYILKAVVNASVGQELGSREHIKMAQQFFQ 473          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A836CHL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 7.700e-41
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1
Query:    1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            +NDL+RHN VVFS G+ +LKVLP LVDFI EARLNLVIY L++  +QEAYDLIKDLEPSTPQEYILKGVVNA++GQA GSREHLKMAQQYFQ
Sbjct:  260 SNDLVRHNMVVFSGGQGALKVLPSLVDFIVEARLNLVIYQLRNNNVQEAYDLIKDLEPSTPQEYILKGVVNATLGQANGSREHLKMAQQYFQ 351          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S1N908_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N908_9EUGL)

HSP 1 Score: 149 bits (376), Expect = 1.420e-40
Identity = 70/91 (76.92%), Postives = 82/91 (90.11%), Query Frame = 1
Query:    4 NDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            NDL++HN VVF  G+ +L+VLPPLVD +PEARLNLVIY+L+HE +QEAY LIKD+EP TPQEYILKGVVNASIGQ TGSR+H+KMAQQYFQ
Sbjct:  258 NDLVKHNMVVFRSGENALQVLPPLVDLLPEARLNLVIYHLRHEEVQEAYQLIKDVEPVTPQEYILKGVVNASIGQMTGSRDHIKMAQQYFQ 348          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A8B6D9I8_MYTGA (Intraflagellar transport protein 56 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D9I8_MYTGA)

HSP 1 Score: 145 bits (365), Expect = 3.090e-40
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            A DLI+HN VVF  G+ SL+VLPPL+D IPEARLNLVIYYLK + + EAY+LIKDLEP+TPQEYILKGVVNA++GQ +GSREHLK+AQQYFQ
Sbjct:  265 ARDLIKHNLVVFRGGEGSLQVLPPLIDVIPEARLNLVIYYLKQDDVTEAYNLIKDLEPTTPQEYILKGVVNAALGQESGSREHLKIAQQYFQ 356          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A813A4P7_SYMMI (Ttc26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A4P7_SYMMI)

HSP 1 Score: 139 bits (351), Expect = 4.500e-40
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 1
Query:    7 DLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            +LIRHN VVFS G ++ ++LP LVD IPEARLNLVIYYL+H  +QEA+DLIKDLEP+TPQEYILKGVV+A IGQ+TGSREHLK+AQQ FQ
Sbjct:   87 ELIRHNMVVFSNGDQAQQILPGLVDVIPEARLNLVIYYLRHHQVQEAHDLIKDLEPATPQEYILKGVVHACIGQSTGSREHLKVAQQCFQ 176          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S2GLE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLE2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.930e-39
Identity = 69/92 (75.00%), Postives = 85/92 (92.39%), Query Frame = 1
Query:    1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            +NDLIRHN VVFS+G+ +L+VLP LV+FIPEARLNLVIYYL++ G+Q+AY+LIKD+EPSTPQ+YILKGVVNA +GQ  GSREH+KMAQQ+FQ
Sbjct:  321 SNDLIRHNMVVFSQGEGALQVLPQLVEFIPEARLNLVIYYLRNGGVQDAYELIKDIEPSTPQQYILKGVVNACVGQDIGSREHIKMAQQFFQ 412          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: UPI000719B8A6 (intraflagellar transport protein 56-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B8A6)

HSP 1 Score: 146 bits (368), Expect = 1.950e-39
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    7 DLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            DLIRHN VVF  G+ SL+VLPPL+D IPEARLNLVIYYLK + +QEAY+LIK+LEP+TPQEYILKGVVNAS+GQ  GSREHLK+AQQYFQ
Sbjct:  257 DLIRHNLVVFRGGEGSLQVLPPLIDIIPEARLNLVIYYLKQDDVQEAYNLIKELEPATPQEYILKGVVNASLGQEQGSREHLKIAQQYFQ 346          
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A4X1SWY2_PIG (Intraflagellar transport protein 56 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A4X1SWY2_PIG)

HSP 1 Score: 140 bits (354), Expect = 3.820e-39
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
            A +LIRHN VVF  G+ +L+VLPPLVD IPEARLNLVIYYL+ + +QEAY+LIKDLEP+TPQEYILKGVVNA++GQ  GSR+H+K+AQQ+FQ
Sbjct:   53 AKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQ 144          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC6_ECTSI5.250e-54100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4E7C5_9STRA1.620e-4177.17Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A7S2RXW2_9STRA4.330e-4180.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CHL9_9STRA7.700e-4180.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1N908_9EUGL1.420e-4076.92Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8B6D9I8_MYTGA3.090e-4076.09Intraflagellar transport protein 56 n=2 Tax=Mytilu... [more]
A0A813A4P7_SYMMI4.500e-4075.56Ttc26 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S2GLE2_9STRA1.930e-3975.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI000719B8A61.950e-3978.89intraflagellar transport protein 56-like n=1 Tax=P... [more]
A0A4X1SWY2_PIG3.820e-3972.83Intraflagellar transport protein 56 n=1 Tax=Sus sc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1311contigE-fasciculatus_F_contig1311:17398..18623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1e-44
Seed eggNOG ortholog2880.D8LBC6
Preferred nameTTC26
KEGG koko:K19685
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001655,GO:0001822,GO:0002009,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007399,GO:0008150,GO:0008594,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0035239,GO:0035295,GO:0035720,GO:0035735,GO:0035845,GO:0036064,GO:0039022,GO:0039023,GO:0042073,GO:0042461,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060993,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0072073,GO:0072114,GO:0072176,GO:0072178,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG3785@1,KOG3785@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size276
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1311.2358.1prot_E-fasciculatus_F_contig1311.2358.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1311 17398..18623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.664513-CDS-E-fasciculatus_F_contig1311:17397..175051622927815.664513-CDS-E-fasciculatus_F_contig1311:17397..17505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 17398..17505 +
1695995706.7033186-CDS-E-fasciculatus_F_contig1311:17397..175051695995706.7033186-CDS-E-fasciculatus_F_contig1311:17397..17505Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 17398..17505 +
1622927815.6796277-CDS-E-fasciculatus_F_contig1311:18034..181281622927815.6796277-CDS-E-fasciculatus_F_contig1311:18034..18128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 18035..18128 +
1695995706.7166736-CDS-E-fasciculatus_F_contig1311:18034..181281695995706.7166736-CDS-E-fasciculatus_F_contig1311:18034..18128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 18035..18128 +
1622927815.6917176-CDS-E-fasciculatus_F_contig1311:18549..186231622927815.6917176-CDS-E-fasciculatus_F_contig1311:18549..18623Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 18550..18623 +
1695995706.7265549-CDS-E-fasciculatus_F_contig1311:18549..186231695995706.7265549-CDS-E-fasciculatus_F_contig1311:18549..18623Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1311 18550..18623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1311.2358.1

>prot_E-fasciculatus_F_contig1311.2358.1 ID=prot_E-fasciculatus_F_contig1311.2358.1|Name=mRNA_E-fasciculatus_F_contig1311.2358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAY
DLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ
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mRNA from alignment at E-fasciculatus_F_contig1311:17398..18623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1311.2358.1 ID=mRNA_E-fasciculatus_F_contig1311.2358.1|Name=mRNA_E-fasciculatus_F_contig1311.2358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:17398..18623+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAATGATTTGATCCGCCACAACACGGTGGTGTTCTCCGAAGGCAAGGA GTCTCTCAAGGTGCTTCCCCCGCTCGTCGACTTCATCCCGGAAGCGAGGC TCAACTTGGTGAGCAAGTATCACTGTGATGTTGTTGTTGTTGTTGTTGTC TTCACATTTAAAACCGTTCCGATCTCCCTATCCAGTGCCTACACCTGTCC GTACTTCTCTGTGTAGGAGACACATGTTGAAAGAGCCTTGTAGAATGTTG ATTTGGTAAAACAGGCATTTTCGTCGAGATAGCGCCGTCGTAAACGCCGC TACTTGCGTGAAACCTCGGTGTGGCGTACCTAAATCGGGGGAATGGTATT GGTAAACAGTGTAATTCTTCGTACAACGTAAAAAAAAACTATGTCCAATG ATGAAGAACTTGGAGTAGACGTACAGCCGCCGTCTCCGCGGAGTGAATTG ATTGGTGTGGTGTGCTGTAATGTGATATTGGGCTTGTTGGGTAGTTGACA AGGCACTGATGGGGGTGCAGGTTTAAATATAAACCCTTTGGAGTAGCATC GCTTTCGCGCCGCTCATGTATCCCCCCCCCCCCTCCTCTTTCTGTTGACC TTTGGCTTGGTCCGCTTTTATTCGATTTTTTTTCAAGGTGATCTACTATT TGAAACACGAAGGGTTGCAAGAGGCGTACGACCTCATCAAGGACTTGGAG CCCTCCACTCCTCAGGAATACATCCTCAAAGGTATGTACTGCAGTGAGCT TCGCGGTGGTCGGGGGTATGGGGCTTAAAAAAATACGGGGAAAGGGCCCT CCCAGCCCATCCATCCCCCGGATAAACTCTACAGGTCGTTTGGTTTTGAC CAAGATCTCGAGCCGGAAGACTTAAAATTGTTTTCCAATCTCAGGCGTAG AAATTCTGTAGTGGGGTGACTTGCGAAGGCGAGCAACCCAAACAAAAAAA GAGTACGGGGCACCAAGAAACCATTCTATGGTAGGTGAGGTAGTGCACCT TCTCGTGGTACGGCTGTCCGCATCTGATAGCCACGCGAGAGATGTGTGGG TTGGTCGGGGCTAGAGTTGAGATTGTTCCGAAATTGCCACAAGCTGAACT ACTCCTCCTAAGTTTAGGTGATTCAAACCCAGCCTTCTTTTATGTGCACC AGGTGTGGTGAATGCGTCGATCGGGCAGGCGACGGGCTCAAGGGAGCACC TCAAGATGGCTCAACAGTACTTTCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1311:17398..18623+

>mRNA_E-fasciculatus_F_contig1311.2358.1 ID=mRNA_E-fasciculatus_F_contig1311.2358.1|Name=mRNA_E-fasciculatus_F_contig1311.2358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:17398..18623+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAATGATTTGATCCGCCACAACACGGTGGTGTTCTCCGAAGGCAAGGA
GTCTCTCAAGGTGCTTCCCCCGCTCGTCGACTTCATCCCGGAAGCGAGGC
TCAACTTGGCGAATGATTTGATCCGCCACAACACGGTGGTGTTCTCCGAA
GGCAAGGAGTCTCTCAAGGTGCTTCCCCCGCTCGTCGACTTCATCCCGGA
AGCGAGGCTCAACTTGGTGATCTACTATTTGAAACACGAAGGGTTGCAAG
AGGCGTACGACCTCATCAAGGACTTGGAGCCCTCCACTCCTCAGGAATAC
ATCCTCAAAGGTGATCTACTATTTGAAACACGAAGGGTTGCAAGAGGCGT
ACGACCTCATCAAGGACTTGGAGCCCTCCACTCCTCAGGAATACATCCTC
AAAGGTGTGGTGAATGCGTCGATCGGGCAGGCGACGGGCTCAAGGGAGCA
CCTCAAGATGGCTCAACAGTACTTTCAGGTGTGGTGAATGCGTCGATCGG
GCAGGCGACGGGCTCAAGGGAGCACCTCAAGATGGCTCAACAGTACTTTC
AG
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