mRNA_E-fasciculatus_F_contig1311.2358.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: D8LBC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC6_ECTSI) HSP 1 Score: 184 bits (468), Expect = 5.250e-54 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query: 1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ
Sbjct: 246 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 337
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S4E7C5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S4E7C5_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.620e-41 Identity = 71/92 (77.17%), Postives = 87/92 (94.57%), Query Frame = 1
Query: 1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
+NDLIRHN VVFS+G+ +L+VLP L DF+PEARLNLVIY+L+H+G+QEA++LIKD+EPSTPQEYILKGVVNAS+GQA GSREH+KMAQQ+FQ
Sbjct: 335 SNDLIRHNRVVFSQGEGALQVLPRLADFVPEARLNLVIYHLRHDGMQEAHELIKDVEPSTPQEYILKGVVNASVGQALGSREHVKMAQQFFQ 426
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S2RXW2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXW2_9STRA) HSP 1 Score: 152 bits (383), Expect = 4.330e-41 Identity = 73/91 (80.22%), Postives = 83/91 (91.21%), Query Frame = 1
Query: 4 NDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
N+LIRHN VVFS G+ +L+VLPPLVD IPEARLNLVIYYL+HEG+QEAY+LIKDLEPSTP EYILK VVNAS+GQ GSREH+KMAQQ+FQ
Sbjct: 383 NNLIRHNQVVFSMGEGALQVLPPLVDVIPEARLNLVIYYLRHEGIQEAYELIKDLEPSTPSEYILKAVVNASVGQELGSREHIKMAQQFFQ 473
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A836CHL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL9_9STRA) HSP 1 Score: 150 bits (378), Expect = 7.700e-41 Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 1
Query: 1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
+NDL+RHN VVFS G+ +LKVLP LVDFI EARLNLVIY L++ +QEAYDLIKDLEPSTPQEYILKGVVNA++GQA GSREHLKMAQQYFQ
Sbjct: 260 SNDLVRHNMVVFSGGQGALKVLPSLVDFIVEARLNLVIYQLRNNNVQEAYDLIKDLEPSTPQEYILKGVVNATLGQANGSREHLKMAQQYFQ 351
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S1N908_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N908_9EUGL) HSP 1 Score: 149 bits (376), Expect = 1.420e-40 Identity = 70/91 (76.92%), Postives = 82/91 (90.11%), Query Frame = 1
Query: 4 NDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
NDL++HN VVF G+ +L+VLPPLVD +PEARLNLVIY+L+HE +QEAY LIKD+EP TPQEYILKGVVNASIGQ TGSR+H+KMAQQYFQ
Sbjct: 258 NDLVKHNMVVFRSGENALQVLPPLVDLLPEARLNLVIYHLRHEEVQEAYQLIKDVEPVTPQEYILKGVVNASIGQMTGSRDHIKMAQQYFQ 348
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A8B6D9I8_MYTGA (Intraflagellar transport protein 56 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D9I8_MYTGA) HSP 1 Score: 145 bits (365), Expect = 3.090e-40 Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 1
Query: 1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
A DLI+HN VVF G+ SL+VLPPL+D IPEARLNLVIYYLK + + EAY+LIKDLEP+TPQEYILKGVVNA++GQ +GSREHLK+AQQYFQ
Sbjct: 265 ARDLIKHNLVVFRGGEGSLQVLPPLIDVIPEARLNLVIYYLKQDDVTEAYNLIKDLEPTTPQEYILKGVVNAALGQESGSREHLKIAQQYFQ 356
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A813A4P7_SYMMI (Ttc26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A4P7_SYMMI) HSP 1 Score: 139 bits (351), Expect = 4.500e-40 Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 7 DLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
+LIRHN VVFS G ++ ++LP LVD IPEARLNLVIYYL+H +QEA+DLIKDLEP+TPQEYILKGVV+A IGQ+TGSREHLK+AQQ FQ
Sbjct: 87 ELIRHNMVVFSNGDQAQQILPGLVDVIPEARLNLVIYYLRHHQVQEAHDLIKDLEPATPQEYILKGVVHACIGQSTGSREHLKVAQQCFQ 176
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A7S2GLE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLE2_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.930e-39 Identity = 69/92 (75.00%), Postives = 85/92 (92.39%), Query Frame = 1
Query: 1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
+NDLIRHN VVFS+G+ +L+VLP LV+FIPEARLNLVIYYL++ G+Q+AY+LIKD+EPSTPQ+YILKGVVNA +GQ GSREH+KMAQQ+FQ
Sbjct: 321 SNDLIRHNMVVFSQGEGALQVLPQLVEFIPEARLNLVIYYLRNGGVQDAYELIKDIEPSTPQQYILKGVVNACVGQDIGSREHIKMAQQFFQ 412
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: UPI000719B8A6 (intraflagellar transport protein 56-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B8A6) HSP 1 Score: 146 bits (368), Expect = 1.950e-39 Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 1
Query: 7 DLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
DLIRHN VVF G+ SL+VLPPL+D IPEARLNLVIYYLK + +QEAY+LIK+LEP+TPQEYILKGVVNAS+GQ GSREHLK+AQQYFQ
Sbjct: 257 DLIRHNLVVFRGGEGSLQVLPPLIDIIPEARLNLVIYYLKQDDVQEAYNLIKELEPATPQEYILKGVVNASLGQEQGSREHLKIAQQYFQ 346
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Match: A0A4X1SWY2_PIG (Intraflagellar transport protein 56 n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A4X1SWY2_PIG) HSP 1 Score: 140 bits (354), Expect = 3.820e-39 Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 1
Query: 1 ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYDLIKDLEPSTPQEYILKGVVNASIGQATGSREHLKMAQQYFQ 276
A +LIRHN VVF G+ +L+VLPPLVD IPEARLNLVIYYL+ + +QEAY+LIKDLEP+TPQEYILKGVVNA++GQ GSR+H+K+AQQ+FQ
Sbjct: 53 AKELIRHNLVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQ 144 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1311.2358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1311.2358.1 >prot_E-fasciculatus_F_contig1311.2358.1 ID=prot_E-fasciculatus_F_contig1311.2358.1|Name=mRNA_E-fasciculatus_F_contig1311.2358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp ANDLIRHNTVVFSEGKESLKVLPPLVDFIPEARLNLVIYYLKHEGLQEAYback to top mRNA from alignment at E-fasciculatus_F_contig1311:17398..18623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1311.2358.1 ID=mRNA_E-fasciculatus_F_contig1311.2358.1|Name=mRNA_E-fasciculatus_F_contig1311.2358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:17398..18623+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1311:17398..18623+ >mRNA_E-fasciculatus_F_contig1311.2358.1 ID=mRNA_E-fasciculatus_F_contig1311.2358.1|Name=mRNA_E-fasciculatus_F_contig1311.2358.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1311:17398..18623+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |