mRNA_E-fasciculatus_F_contig13108.2355.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13108.2355.1
Unique NamemRNA_E-fasciculatus_F_contig13108.2355.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13108.2355.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.640e-39
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:   79 QAELLSIFRGQWENGLVPTVRYAPGYEADYLGGSFLPGPGGWGGHSSE-NASSAQSAGGANTSSLAAIPLHAEAALRIFDLSP 324
            +AELLSIFRGQWENGLVPTVRYAPGYEAD+LGGSFLPGPGGWGG SS+ NASSAQSAGGANTSSLAAIPLHAEAALRIFDLSP
Sbjct:  108 RAELLSIFRGQWENGLVPTVRYAPGYEADFLGGSFLPGPGGWGGRSSDKNASSAQSAGGANTSSLAAIPLHAEAALRIFDLSP 190
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13108.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKU2_ECTSI3.640e-3993.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13108contigE-fasciculatus_F_contig13108:3407..3730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D8LKU2
EggNOG OGs28RAS@1,2QXZV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.4411147-CDS-E-fasciculatus_F_contig13108:3406..37301622927815.4411147-CDS-E-fasciculatus_F_contig13108:3406..3730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13108 3407..3730 +
1695995706.5633876-CDS-E-fasciculatus_F_contig13108:3406..37301695995706.5633876-CDS-E-fasciculatus_F_contig13108:3406..3730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13108 3407..3730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13108.2355.1prot_E-fasciculatus_F_contig13108.2355.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13108 3407..3730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13108.2355.1

>prot_E-fasciculatus_F_contig13108.2355.1 ID=prot_E-fasciculatus_F_contig13108.2355.1|Name=mRNA_E-fasciculatus_F_contig13108.2355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
GILSHIPSHLSLSLSLSLSLSTPPAKQAELLSIFRGQWENGLVPTVRYAP
GYEADYLGGSFLPGPGGWGGHSSENASSAQSAGGANTSSLAAIPLHAEAA
LRIFDLSP
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mRNA from alignment at E-fasciculatus_F_contig13108:3407..3730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13108.2355.1 ID=mRNA_E-fasciculatus_F_contig13108.2355.1|Name=mRNA_E-fasciculatus_F_contig13108.2355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=324bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13108:3407..3730+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTATACTATCACACATACCATCCCACCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCCACGCCTCCCGCAAAGCAGGCGGAACTGCTGTCGATCT
TCCGCGGCCAGTGGGAGAACGGCTTGGTCCCTACGGTGAGGTACGCCCCA
GGCTACGAGGCCGACTATCTCGGGGGATCGTTCCTCCCGGGTCCCGGGGG
TTGGGGCGGCCATAGTAGCGAAAACGCCTCCTCGGCACAGTCGGCGGGCG
GCGCCAACACTTCCTCTCTGGCCGCGATTCCCCTGCACGCAGAGGCAGCG
CTGCGGATCTTCGATCTGTCTCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13108:3407..3730+

>mRNA_E-fasciculatus_F_contig13108.2355.1 ID=mRNA_E-fasciculatus_F_contig13108.2355.1|Name=mRNA_E-fasciculatus_F_contig13108.2355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13108:3407..3730+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTATACTATCACACATACCATCCCACCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCCACGCCTCCCGCAAAGCAGGCGGAACTGCTGTCGATCT
TCCGCGGCCAGTGGGAGAACGGCTTGGTCCCTACGGTGAGGTACGCCCCA
GGCTACGAGGCCGACTATCTCGGGGGATCGTTCCTCCCGGGTCCCGGGGG
TTGGGGCGGCCATAGTAGCGAAAACGCCTCCTCGGCACAGTCGGCGGGCG
GCGCCAACACTTCCTCTCTGGCCGCGATTCCCCTGCACGCAGAGGCAGCG
CTGCGGATCTTCGATCTGTCTCCCGGTATACTATCACACATACCATCCCA
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACGCCTCCCGCAA
AGCAGGCGGAACTGCTGTCGATCTTCCGCGGCCAGTGGGAGAACGGCTTG
GTCCCTACGGTGAGGTACGCCCCAGGCTACGAGGCCGACTATCTCGGGGG
ATCGTTCCTCCCGGGTCCCGGGGGTTGGGGCGGCCATAGTAGCGAAAACG
CCTCCTCGGCACAGTCGGCGGGCGGCGCCAACACTTCCTCTCTGGCCGCG
ATTCCCCTGCACGCAGAGGCAGCGCTGCGGATCTTCGATCTGTCTCCC
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