mRNA_E-fasciculatus_F_contig13107.2354.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: D8LTZ3_ECTSI (Beta-1,4-galactosyltransferase, family GT7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ3_ECTSI) HSP 1 Score: 272 bits (695), Expect = 1.270e-88 Identity = 155/183 (84.70%), Postives = 158/183 (86.34%), Query Frame = 1
Query: 1 MQYHDGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGNDRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAVGEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQVFLLHDVDLLPSNELAR 549
MQYHDG+KLPPGWVRCVSSKFGRDYFFDTQTGES WFAP PXXXXX XXX XXXXXXXX GPSSLPPQDGG +TKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFL RAVG GG+FRVYVVEQS DDGLKFNRGKLLNIGFDLARKEGAQVFLLHDVDLLPSNELAR
Sbjct: 1 MQYHDGRKLPPGWVRCVSSKFGRDYFFDTQTGESTWFAPTAPXXXXXSRXXXEEEDLESFSXXXXXXXXXX---GPSSLPPQDGG--KTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLERAVGGAGGEFRVYVVEQSTDDGLKFNRGKLLNIGFDLARKEGAQVFLLHDVDLLPSNELAR 178
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A1Z5KC44_FISSO (Beta-1,4-galactosyltransferase 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC44_FISSO) HSP 1 Score: 119 bits (297), Expect = 6.910e-29 Identity = 72/188 (38.30%), Postives = 99/188 (52.66%), Query Frame = 1
Query: 10 HDGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPAT-----PXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGNDRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAV--GEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQ---VFLLHDVDLLPSNEL 543
H LPPGW R S+ R ++F ++T + W P P R R E + L + + VA++VP+RDL AQ+R+AHL+QF+P+M FLG G++ ++ +Y++EQS DD KFNRGKLLNIGFD+ARK A+ VF+ HDVDLLP L
Sbjct: 7 HINDPLPPGWSRGFSNSQKRTFYFHSETKHTQWHFPTASEAKDPMKALERANAAKEREKRKAATTAPPEAKRPRSESDNILEDLEASS----VAIIVPFRDLHAAQKRAAHLQQFIPHMVQFLGSLTKDGKIS-NYHIYIIEQS-DDQRKFNRGKLLNIGFDVARKAAARNHDVFIFHDVDLLPDAAL 188
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A7S3LF72_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LF72_9STRA) HSP 1 Score: 117 bits (292), Expect = 9.430e-29 Identity = 90/194 (46.39%), Postives = 109/194 (56.19%), Query Frame = 1
Query: 25 LPPGWVRCVSSKFGRDYFFDTQTGESAWFAPAT-----PXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGN------------DRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAV--GEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQ--VFLLHDVDLLPSNEL 543
LPPGW R S+ R ++F +T + W P P XXXXXXXXXXX S+Q P+ + N D T VAV+VPYRDL AQ+R+AHL+QFVP+M F + G V G + VY++ QS DDG KFNRGKLLNIGFDLA K G + VF+ HDVDLLPS EL
Sbjct: 10 LPPGWSREYSNSQKRHFYFHKETNHTQWHFPTASEAKDPKVAEKRAREAKERXXXXXXXXXXXAGAASQQ--PAVKRARSATNTKSNDDDFLELADATSVAVIVPYRDLHVAQKRAAHLKQFVPWMHQFFDKLQRKGLVSG-YHVYIINQS-DDGRKFNRGKLLNIGFDLATKSGRKHDVFIFHDVDLLPSPEL 199
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A7S4M9S3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M9S3_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.260e-28 Identity = 74/185 (40.00%), Postives = 93/185 (50.27%), Query Frame = 1
Query: 1 MQYHDGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGNDRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAVGE-VGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKE---GAQVFLLHDVDLLPSNEL 543
M + + LP GW S + YF T + W P S GPS P+ +D VA++VPYRDL AQ R+ HL QFVP+M FL + + D+ VY+VEQS DDG KFNRGKLLNIGFDLAR++ G VF+ HDVDLLP ++L
Sbjct: 1 MSSSNDRPLPSGWSSGFSKSKQKPYFICGATNHTQWHFPTDDDVADPKGAKHRVEETMRAELAKRSAS--SGGGGPSQKRPK--SSDAASVAIIVPYRDLHAAQNRARHLRQFVPHMLQFLKKLKRRGLVSDYHVYIVEQS-DDGRKFNRGKLLNIGFDLARRDRRLGHNVFIFHDVDLLPGDDL 180
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: B7G071_PHATC (Galactosyl transferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G071_PHATC) HSP 1 Score: 117 bits (293), Expect = 3.070e-28 Identity = 73/190 (38.42%), Postives = 95/190 (50.00%), Query Frame = 1
Query: 25 LPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGN-------------DRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAV--GEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKE--GAQVFLLHDVDLLPSNEL 543
LPPGW R S+ R ++F +T + W P + P P + D T VAV+VPYRD+ AQ+R+AHL +FVP+M+ F R + G+V D+ Y++EQS DDG KFNRGKLLNIGFDLARK VF+ HDVDLLP ++L
Sbjct: 10 LPPGWSRGYSTSQKRTFYFHQETKHTQWHFPTASEAKDPLKGKQRAELNKDREKKRQHEDSSGADKRPRGSPGEYMRKTVDTSVDDILELADSTSVAVIVPYRDIHSAQQRAAHLAKFVPHMQRFFNRLLKSGKVS-DYHFYIIEQS-DDGRKFNRGKLLNIGFDLARKSKRSHDVFIFHDVDLLPQDDL 197
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A836CFW6_9STRA (Galactosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW6_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.220e-28 Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 1
Query: 22 KLPPGWVRCVSSKFGRD-YFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGNDRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAVGEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQVFLLHDVDLLPSNEL 543
+LP GWV S +G + Y+F+T TGE+ W P+ + G S Q G + +VA++VP+RD QRR+ HL +FVP M F+ G +F +++VEQS +DG KFNRGKLLNIG+D+A+ +G +LHDVDLLPS EL
Sbjct: 7 ELPEGWVSAPSRTYGGETYYFNTFTGEATWVYPSGAASSSGGAPANHKRALSEAADGPALKRQHTEAAGQGSGAAQ--GEEPPRVAIIVPFRDQHAEQRRAEHLARFVPAMTQFMLAQ----GVEFHIFIVEQS-EDGRKFNRGKLLNIGYDIAKNDGYNTLVLHDVDLLPSAEL 174
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A7S4AQ75_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AQ75_9STRA) HSP 1 Score: 117 bits (292), Expect = 5.740e-28 Identity = 74/199 (37.19%), Postives = 97/199 (48.74%), Query Frame = 1
Query: 13 DGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGN--------------DRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAVGEVG--GDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQ------VFLLHDVDLLPSNEL 543
D LP GW+R S+ R Y+ ++T + W P + ++G S P + D T VA++VP+RDL Q+RS HL FVP+M FLG + DFR+Y+VEQS DDG KFNRGKLLNIGFD+ARK ++ VF+ HDVDLLPS +L
Sbjct: 6 DKLPLPKGWIRTFSNSQKRYYYSHSETKHTQWHFPTASEANDPWMAKRRAEGNNHQPSSHHPSKKQRTEKGSRSSAPVASTSAASLLDVDALLDVADTTSVAIIVPFRDLHKEQKRSEHLASFVPHMIKFLGNLQTKERRISDFRIYIVEQS-DDGRKFNRGKLLNIGFDVARKHKSKNGQKHDVFIFHDVDLLPSKQL 203
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A7S4HUL3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUL3_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.990e-28 Identity = 74/185 (40.00%), Postives = 93/185 (50.27%), Query Frame = 1
Query: 1 MQYHDGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPSSLPPQDGGNDRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAVGE-VGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKE---GAQVFLLHDVDLLPSNEL 543
M + + LP GW S + YF T + W P S GPS P+ +D VA++VPYRDL AQ R+ HL QFVP+M FL + + D+ VY+VEQS DDG KFNRGKLLNIGFDLAR++ G VF+ HDVDLLP ++L
Sbjct: 1 MSSSNDRPLPSGWSSGFSKSKQKPYFICGATNHTQWHFPTDDDVADPKGAKHRVEETMRAELAKRSAS--SGGGGPSQKRPK--SSDAASVAIIVPYRDLHAAQNRARHLRQFVPHMLQFLKKLKRRGLVSDYHVYIVEQS-DDGRKFNRGKLLNIGFDLARRDRRLGHNVFIFHDVDLLPGDDL 180
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: A0A448ZN40_9STRA (WW domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN40_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.930e-27 Identity = 81/190 (42.63%), Postives = 105/190 (55.26%), Query Frame = 1
Query: 13 DGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRQEGPS--SLPPQDG---GNDRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLG--RAVGEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQ------VFLLHDVDLLPSNEL 543
D LP GW+R S+ R Y+ ++T + W P XXXXXXXX+ ++G + SL D D T VA++VP+RDL Q+RS HL +F+P+M FLG + D+ VY+VEQS DDG KFNRGKLLNIGFD+ARK + VF+ HDVDLLPS +L
Sbjct: 6 DKLPLPKGWIRTFSNSQKRYYYSHSETKHTQWHFPTASEANDPWMAKRRAETNRSSQXXXXXXXXQRTEKGAAVASLSDVDALLDVADTTSVAIIVPFRDLHKEQKRSEHLSKFIPHMIRFLGNLKTTERRISDYHVYIVEQS-DDGRKFNRGKLLNIGFDIARKHKGRNGQKHDVFIFHDVDLLPSKQL 194
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Match: G4YY24_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY24_PHYSP) HSP 1 Score: 111 bits (278), Expect = 1.690e-26 Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 259 DRTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLGRAVGEVGGDFRVYVVEQSADDGLKFNRGKLLNIGFDLARKEGAQVFLLHDVDLLPSNELA 546
D T+VAV+VP+RD PAQ+R AHL++FVPYM +FL R F ++++EQS D G KFNRGKLLN GFD+AR + VF+ HDVDLLP ++LA
Sbjct: 3 DSTRVAVLVPFRDNHPAQQRRAHLDEFVPYMTEFLQRHCASKSASFHIFILEQSMD-GRKFNRGKLLNAGFDMARND-YDVFIFHDVDLLPGDDLA 96 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13107.2354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13107.2354.1 >prot_E-fasciculatus_F_contig13107.2354.1 ID=prot_E-fasciculatus_F_contig13107.2354.1|Name=mRNA_E-fasciculatus_F_contig13107.2354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=184bp MQYHDGKKLPPGWVRCVSSKFGRDYFFDTQTGESAWFAPATPPPPPPPPPback to top mRNA from alignment at E-fasciculatus_F_contig13107:248..799- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13107.2354.1 ID=mRNA_E-fasciculatus_F_contig13107.2354.1|Name=mRNA_E-fasciculatus_F_contig13107.2354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13107:248..799- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13107:248..799- >mRNA_E-fasciculatus_F_contig13107.2354.1 ID=mRNA_E-fasciculatus_F_contig13107.2354.1|Name=mRNA_E-fasciculatus_F_contig13107.2354.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13107:248..799- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |