mRNA_E-fasciculatus_F_contig131.2345.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: D8LQJ6_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ6_ECTSI) HSP 1 Score: 572 bits (1474), Expect = 3.290e-205 Identity = 289/317 (91.17%), Postives = 296/317 (93.38%), Query Frame = 1
Query: 1 MRNNSFGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRNSIGLRHNFVSYPEQLLPTTAHEQEQPEPS---PWQSCCGSIAACRRSLGNVAARFGASSAQGQNVNGRNSNTAGSVGADSQGETEARGRILPWGV 942
MRNN+ GEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGS LEVAFGTLSLLFTILWSMILAG VHCGAEWVMTVWVTHDP YVNQ SVGFSGVIFTLALMESYRSTQPTRSVFGM++VPTRMYPWVLLVLLSVFM +ISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVR+SIGLRHNFV YP LPTTA EQEQP PS WQSCC SI ACRRSLGNVAARFGASSA GQN NGRNSNTAGSVGADS+GETE RGR+LPWGV
Sbjct: 1 MRNNNLGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSSLEVAFGTLSLLFTILWSMILAGVVHCGAEWVMTVWVTHDPTYVNQPSVGFSGVIFTLALMESYRSTQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRDSIGLRHNFVPYPPPALPTTADEQEQPGPSIRDSWQSCCDSIGACRRSLGNVAARFGASSAHGQNANGRNSNTAGSVGADSRGETETRGRLLPWGV 317
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: A0A835Z1X9_9STRA (Rhomboid domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X9_9STRA) HSP 1 Score: 208 bits (530), Expect = 4.350e-62 Identity = 107/253 (42.29%), Postives = 158/253 (62.45%), Query Frame = 1
Query: 7 NNSFGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTV--WVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPN-ISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRNSIGLRHNFVSYPEQLLPTTAHEQEQPEPSP 756
++ GE G VPLCTL +C + +F+ +T I Y ++ ++YLGE+YR+IT A +H +MHI FNMMS L+IG GLE GT+++ T+ WS+IL G ++C EW+ H +++ Q +VGFSGVIFTLA+ME+ RS++P R + GM++VPT++YPW L+++L V M +SF+GHL+G +VG++H YGLT PL+PS +ME + + NF P P A EQ +P
Sbjct: 2 SSRLGEALGGVPLCTLCVVAMCCAVHLAIFLLDTPITMYSIMARNVLYLGEWYRIITAAFVHASMMHIGFNMMSLLAIGGGLESDLGTVAMTMTVWWSVILVGGLYCAGEWLFADVRGGEHAREHLLQQAVGFSGVIFTLAVMEAQRSSEPYRMLMGMVKVPTKLYPWALMIVLQVMMKGEVSFMGHLAGAIVGILHTYGLTAPLLPSKQMLHDMEDWPGISAMAAALPNFKRCPP---PPPAGEQHADSDAP 251
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: B8C3M6_THAPS (Rhomboid domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M6_THAPS) HSP 1 Score: 186 bits (471), Expect = 5.290e-53 Identity = 96/232 (41.38%), Postives = 145/232 (62.50%), Query Frame = 1
Query: 22 EVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRNSIGLRHNFVSYPEQLLP 717
E +PL TL+ LC + F+ + N+ + P ++Y+ EYYR+IT +L HG LMHI NMMS ++IG+ LE FGT ++ T+LW ++L ++ W++ V ++ K + Q S+GFSGVIF L+++E+ + +RSVFGMIQV ++MYPW LLV+L MP ISF+GHLSGIL+G + ++G K + PS A+ ++E+ W +I + FV PE P
Sbjct: 6 ETLASIPLATLSIMALCCFVYLYQLAFDPTLHNFTMCPRLVLYMNEYYRIITSSLFHGSLMHIGMNMMSTMAIGTSLEKRFGTFTMALTVLWGVLLTSVIYMTTSWLLYVGFGYE-KMMYQHSLGFSGVIFQLSVLEANLTPNRSRSVFGMIQVSSKMYPWCLLVVLQFIMPQISFLGHLSGILLGTLQLHGADK-IFPSDAYLQDLET-WSALEAITTKPGFVKMPETGSP 234
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: A0A7S2GX31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GX31_9STRA) HSP 1 Score: 179 bits (453), Expect = 4.110e-50 Identity = 101/235 (42.98%), Postives = 140/235 (59.57%), Query Frame = 1
Query: 22 EVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKP-LMPSPAFYIEMESYWWVRNSIG----LRHNFVSYPEQL 711
E +PL TL+ LC I+ +F+ + Y + P ++YL EYYR+IT L H G +H NM S +I S LE +GTL + TILW MIL V+ W M + ++ K + Q SVGFSGVIF L+++ES + TRSVFG I+VP+ +YPW LLV+L V +P ISF+GHLSGILVG + +YG+ P ++PS + +ME ++ N I R FV P +L
Sbjct: 6 ETLASIPLATLSIIALCTIIFTYQLLFDPPLHQYTMCPRNVLYLSEYYRIITSNLFHSGFLHFFMNMSSTAAISSSLEHRYGTLKQMVTILWGMILTSIVYMIISWAMYMIFGYE-KSMFQHSVGFSGVIFQLSVLESNINLDRTRSVFGFIKVPSYLYPWALLVVLQVLIPAISFLGHLSGILVGTLQLYGILDPFVLPSDDYLRKMEDRSFIANFINSSSQYRGQFVRAPPEL 239
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: A0A7S0FT53_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FT53_9STRA) HSP 1 Score: 177 bits (450), Expect = 7.800e-50 Identity = 102/243 (41.98%), Postives = 138/243 (56.79%), Query Frame = 1
Query: 22 EVAGQVPLCTLAFATLCIILQGCVF----VFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPSPAFYIEMESYWWVRNSIGLRHNFVSYPEQLLPTTAHEQE 738
EVA +PL LC+ CVF + N ++ ++ L P ++Y EYYR+ T + HGGL+HI FNMMS +IGS LE FGTL LFT+ M L + +++ W K V Q SVGFSGV+F L+++E+ S TRSVFGM+QVP +YPW LLV L +FMPNISFVGHLSGI VG + +YG+ L+ Y+ W I R +V P + +H ++
Sbjct: 6 EVAASIPLGNRFIIGLCV----CVFLLQTILNLDLHDFTLCPRNVLYQHEYYRIFTSCVFHGGLLHIGFNMMSTAAIGSLLEKRFGTLRHLFTVFLGMFLTSWTYILVACLLS-WACRYDKLVYQHSVGFSGVLFQLSVLEANLSPNSTRSVFGMVQVPAYLYPWALLVALQIFMPNISFVGHLSGIFVGTLQLYGVLDALVLPSDEYLRAMDDWPSLQQIAAREGYVRTPTDGSSSISHVRD 243
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: W7TU50_9STRA (Peptidase S54, rhomboid domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU50_9STRA) HSP 1 Score: 177 bits (448), Expect = 2.300e-48 Identity = 93/201 (46.27%), Postives = 129/201 (64.18%), Query Frame = 1
Query: 22 EVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRST-QPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPS 621
E ++PLCT LC+ILQ CV + N+ + + + ++Y EYYR+ T A H GL HI NM+SF+ IG+ LE+ GT+ TILWS IL +++ G + VT+ +++ AS GFSGVIFTLA++ES+ S TRS+ GM QVP R YPWVLL+++ + +P ISFVGHLSG+L+GV+ YG L PS
Sbjct: 43 ETLSKIPLCTTLTTLLCLILQLCVVILGWNVNLFSISYAAVVYDHEYYRLFTSAYFHLGLFHIAMNMLSFVGIGAWLEMRMGTMYFFLTILWSTILTNSLYIGICSFLAA-VTNHQQWLFYASAGFSGVIFTLAVLESHSSPPNATRSIMGMCQVPARAYPWVLLIIIQLLLPRISFVGHLSGLLIGVLQSYGCLAFLFPS 242
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: A0A7S0STK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STK5_9STRA) HSP 1 Score: 163 bits (413), Expect = 3.330e-46 Identity = 79/176 (44.89%), Postives = 125/176 (71.02%), Query Frame = 1
Query: 94 FVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPS 621
F+ ++NI NY + IIY E YR+IT A +HGGLMHI NMMS +GS LE+ FG+LS++F +W++ L+G + +W++ V T Y+ ++VG+S V+FT A++E++ + Q RSVFG+ VP+++YP++LL++L V +PNISF+GHLSG++VG++ + G+ L+PS
Sbjct: 1 FITSSNINNYSINSYNIIYNYELYRIITSAFMHGGLMHIAMNMMSLYQLGSELEIQFGSLSMIFITIWTIFLSGFCYIFLQWLIAV-TTGLRGYMGISAVGYSCVLFTYAVIEAFHTNQSYRSVFGIFNVPSKVYPFILLIILQVMLPNISFIGHLSGVIVGLLTITGVVDYLIPS 175
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: A0A812V7G2_9DINO (RBL15 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812V7G2_9DINO) HSP 1 Score: 166 bits (420), Expect = 5.920e-45 Identity = 89/200 (44.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query: 31 GQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVH---CGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPS 621
G +P T FA +C + G + F + G + +++LGE++R+ + A LHGG++HI+ NM S L++G +E GT + +L +++L G ++ C W VT D +++ +VGFSGV+FTLA+ E+ S PTRSVFG+ +VPTR+YPWVLLVLL +PNISF+GHLSG+LVGV+HV GL L+PS
Sbjct: 7 GGLPAGTALFAGICAAVFGVQYAFAVDTGPLAIGAFPVVFLGEWFRLASSAFLHGGILHILMNMASLLAMGPSVESILGTAQFVTLVLAAVLLEGLIYVCVCVGCWA----VTSDAAWLHMYAVGFSGVLFTLAVEEASLSPNPTRSVFGLFRVPTRLYPWVLLVLLQFAIPNISFLGHLSGLLVGVLHVGGLLAWLLPS 202
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: A0A7S0K707_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K707_CAFRO) HSP 1 Score: 166 bits (420), Expect = 1.710e-44 Identity = 89/200 (44.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query: 31 GQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVH---CGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYGLTKPLMPS 621
G +P T FA +C + G + F + G + +++LGE++R+ + A LHGG++HI+ NM S L++G +E GT + +L +++L G ++ C W VT D +++ +VGFSGV+FTLA+ E+ S PTRSVFG+ +VPTR+YPWVLLVLL +PNISF+GHLSG+LVGV+HV GL L+PS
Sbjct: 7 GGLPAGTALFAGICAAVFGVQYAFAVDTGPLAIGAFPVVFLGEWFRLASSAFLHGGILHILMNMASLLAMGPSVESILGTAQFVTLVLAAVLLEGLIYVCVCVGCWA----VTSDAAWLHMYAVGFSGVLFTLAVEEASLSPNPTRSVFGLFRVPTRLYPWVLLVLLQFAIPNISFLGHLSGLLVGVLHVGGLLAWLLPS 202
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Match: B7FT28_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FT28_PHATC) HSP 1 Score: 162 bits (409), Expect = 4.210e-44 Identity = 89/195 (45.64%), Postives = 120/195 (61.54%), Query Frame = 1
Query: 16 FGEVAGQVPLCTLAFATLCIILQGCVFVF-NTNIGNYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMSFLSIGSGLEVAFGTLSLLFTILWSMILAGAVHCGAEWVMTVWVTHDPKYVNQASVGFSGVIFTLALMESYRSTQPTRSVFGMIQVPTRMYPWVLLVLLSVFMPNISFVGHLSGILVGVMHVYG 597
F E+ + P T LC+IL V + N+ + L P +IY E YR+ T AL HG +MH+ NMM+ L+IGS LE FGT LL ILWS++L G ++ G + + + + + Q SVGFSGVIF L+++ES T +RSVFG VP+ +YPWVLLV L +FMP +SF GHL GILVG + +YG
Sbjct: 4 FNELLQRTPQTTTGIIALCVILHVVTKVLLDLNLRIFTLCPQLVIYRLEIYRIATSALFHGNIMHLAMNMMTTLAIGSLLEKRFGTFRLLLIILWSILLTGILYIGIALFLAI-IIQKNQLMRQHSVGFSGVIFHLSVLESNLGTHQSRSVFGFFDVPSYLYPWVLLVGLQIFMPGLSFTGHLVGILVGTLQLYG 197 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig131.2345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig131.2345.1 >prot_E-fasciculatus_F_contig131.2345.1 ID=prot_E-fasciculatus_F_contig131.2345.1|Name=mRNA_E-fasciculatus_F_contig131.2345.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=315bp MRNNSFGEVAGQVPLCTLAFATLCIILQGCVFVFNTNIGNYVLIPSRIIYback to top mRNA from alignment at E-fasciculatus_F_contig131:2985..6894- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig131.2345.1 ID=mRNA_E-fasciculatus_F_contig131.2345.1|Name=mRNA_E-fasciculatus_F_contig131.2345.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3910bp|location=Sequence derived from alignment at E-fasciculatus_F_contig131:2985..6894- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig131:2985..6894- >mRNA_E-fasciculatus_F_contig131.2345.1 ID=mRNA_E-fasciculatus_F_contig131.2345.1|Name=mRNA_E-fasciculatus_F_contig131.2345.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig131:2985..6894- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |