mRNA_E-fasciculatus_F_contig131.2344.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig131.2344.1
Unique NamemRNA_E-fasciculatus_F_contig131.2344.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig131.2344.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 7.210e-186
Identity = 277/306 (90.52%), Postives = 292/306 (95.42%), Query Frame = 1 
Query:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAAAENDGPGPLASAVLIEQAKKAGATEEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTSEGGEKREEDWEPSNCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFEPEQEADEEGDGISEGKAGTMRETRGSTSETTDARATSVERTSTQEGRRAGTGTSEWKARKKQSSTAGKEGKVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFEEMKECMIYHDLY 918
            MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEA A AENDGPGPLASAVLIEQAKKAGAT+EEMWEGTLPP+LAH R+FPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDT EGG+KREEDWEPS+CSICAFFSVSPCKGIFERFVATSKRRDEYLKT+E EQEAD+EGDGISEG+AGT+RETRGSTSET DA ATSVERTSTQ+G RAGTG++E KA KKQ+  AGKEG VAAVGNAAEAGRKRQADRDLIEEQLEKEAL IF+EMK+CMIYHDLY
Sbjct:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEADDEGDGISEGEAGTIRETRGSTSETADASATSVERTSTQDGTRAGTGSAEGKAGKKQNPAAGKEGNVAAVGNAAEAGRKRQADRDLIEEQLEKEALVIFQEMKKCMIYHDLY 306
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BLAST of mRNA_E-fasciculatus_F_contig131.2344.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.760e-47
Identity = 95/189 (50.26%), Postives = 116/189 (61.38%), Query Frame = 1 
Query:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAAAENDGPGPLASAVLIEQAKKAGATEEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTSEGGEKREEDWEPSNCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFE 567
            +Y   F G A V VTG+A S  R ALVASVS AG  VEP SLS  +D++P  +            G GPL S VLIEQ K+ GA  E+ W+G LPPL AH R FPSE G+Y +L EP+T+ G+ICRADWV+  + VCR T+ GG KRE+ W P  CSIC     SPC+ I ++F A S R  E   T E
Sbjct:  104 LYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDV------------GGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSE 280
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BLAST of mRNA_E-fasciculatus_F_contig131.2344.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.750e-44
Identity = 89/183 (48.63%), Postives = 114/183 (62.30%), Query Frame = 1 
Query:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEAPAAAENDGPGPLASAVLIEQAKKAGATEEEMWEGTLPPLLAHHRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTSEGGEKREEDWEPSNCSICAFFSVSPCKGIFERFVATSKRRDE 549
            +Y   F   A V +TG+ASS  R ALVASVS AG  VEP SLS  +D++P  +            G GPL S VLIEQ K+ GA  E+ W+G LP L AH R F SE G+Y +L EP+T+ G+ICRADWV+G + VCR T+ GG KRE+ W P  C+IC     SPC+ I++ F A + R +E
Sbjct:  100 LYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEV------------GGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINE 270
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig131.2344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQJ5_ECTSI7.210e-18690.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ55_ECTSI3.760e-4750.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT1_9PHAE2.750e-4448.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig131contigE-fasciculatus_F_contig131:302..2177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005940.1
Exons4
Model size921
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig131.2344.1prot_E-fasciculatus_F_contig131.2344.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig131 302..2177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927814.154716-CDS-E-fasciculatus_F_contig131:301..3401622927814.154716-CDS-E-fasciculatus_F_contig131:301..340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 302..340 +
1695995705.7760136-CDS-E-fasciculatus_F_contig131:301..3401695995705.7760136-CDS-E-fasciculatus_F_contig131:301..340Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 302..340 +
1622927814.1688216-CDS-E-fasciculatus_F_contig131:713..9351622927814.1688216-CDS-E-fasciculatus_F_contig131:713..935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 714..935 +
1695995705.7896702-CDS-E-fasciculatus_F_contig131:713..9351695995705.7896702-CDS-E-fasciculatus_F_contig131:713..935Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 714..935 +
1622927814.1855073-CDS-E-fasciculatus_F_contig131:1176..14331622927814.1855073-CDS-E-fasciculatus_F_contig131:1176..1433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 1177..1433 +
1695995705.7999876-CDS-E-fasciculatus_F_contig131:1176..14331695995705.7999876-CDS-E-fasciculatus_F_contig131:1176..1433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 1177..1433 +
1622927814.1972268-CDS-E-fasciculatus_F_contig131:1774..21771622927814.1972268-CDS-E-fasciculatus_F_contig131:1774..2177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 1775..2177 +
1695995705.8099663-CDS-E-fasciculatus_F_contig131:1774..21771695995705.8099663-CDS-E-fasciculatus_F_contig131:1774..2177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig131 1775..2177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig131.2344.1

>prot_E-fasciculatus_F_contig131.2344.1 ID=prot_E-fasciculatus_F_contig131.2344.1|Name=mRNA_E-fasciculatus_F_contig131.2344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=307bp
MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISP
PAITDPEAPAAAENDGPGPLASAVLIEQAKKAGATEEEMWEGTLPPLLAH
HRQFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTSEGGEKREED
WEPSNCSICAFFSVSPCKGIFERFVATSKRRDEYLKTFEPEQEADEEGDG
ISEGKAGTMRETRGSTSETTDARATSVERTSTQEGRRAGTGTSEWKARKK
QSSTAGKEGKVAAVGNAAEAGRKRQADRDLIEEQLEKEALAIFEEMKECM
IYHDLY*
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mRNA from alignment at E-fasciculatus_F_contig131:302..2177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig131.2344.1 ID=mRNA_E-fasciculatus_F_contig131.2344.1|Name=mRNA_E-fasciculatus_F_contig131.2344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig131:302..2177+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACAGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGGTGAGGAGGGT
CTCATCAAGGTTCATCACGTGCTGATTGTGATTAGGGTGCGTTGTGATTG
TCGTTTGCAATGAGCAGGTACATTGGCGTGTTACTCGTGGCGTCGGAACC
AGTCGCCTTGTGCATCCCGTAGCATGTTGTCTAGTGACTTGTGCAACCCG
CCGTAGCATAGAGTGGGACGGCAACCGTCCCCGAAGGATGCTGGGATGAT
GTCGAGAATTGAAGAACTGCTGCTGGTGCACTATGCTTTCTCTCGACACT
ACATGTACACGGCAAGACAACATCCTTGATGAAACTGCCGAACCGTCGAA
CCATAGCGAATCTCTTTTTTCTCGTTGTTCGACAACGCTTGCTTTGGTTC
TCCCCGTGACAGGTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCTCT
GGTTGCGTCCGTGTCTCACGCTGGAAAAATAGTCGAACCGGCGTCTCTAT
CGGCGACGATCGATATCTCGCCTCCTGCCATCACAGACCCTGAAGCACCA
GCGGCGGCGGAAAACGATGGTCCGGGACCCCTGGCGAGCGCCGTCTTGAT
TGAACAGGCCAAGAAGGCCGGGGCGACAGAGGAGGTATGGTGCGGTACAT
GGGTAGATGGAGGATAGGAGTGTACTATAATACATGTTCGATAGAGATGG
TTCATGTGCTGGCGGCAGTTTCGTGTCAGCGATGTGTGTGGTGTTTACTC
CTTTCCTTTCCGTCTCTGCATGCGTTCCTGTTTACGAATCTGTTGCGTTT
TTGTCGTGACGTCGGACCTCAGCTCACTCCTCATCCATCATATTTTGGCC
TGCCCAACTATGTCCTATTGATCAGGAAATGTGGGAGGGCACACTTCCAC
CCTTGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCATACGTA
AGGCTTAAGGAACCCATCACTGTCTACGGCACTATTTGCCGCGCCGATTG
GGTTGACGGCGCGTCCAACGTCTGCCGAGATACATCGGAGGGAGGGGAGA
AGAGAGAGGAAGACTGGGAACCTTCCAACTGTTCCATCTGCGCCTTTTTC
TCCGTCAGCCCGTGCAAGGGAATTTTCGAGAGGTAAGGCGCCCCGAGGAC
TATTCTGTCCCAGAATCCGAGGTGATTAATGAGAGTCTCCTTGTAGGGCT
GCGTTTGTGCTCAAGACTCATGGCTACGATTGGCGCTTGTCCTGCAGATG
CTGCAGCGGCGAGTGCGCTCAAAAGCTCTCATGTTCTTGAGCAAGCTATT
CACCTGCCAGAGACTCGTGTGATATGCCGCGTAAGGCGGGCAACATTTCA
ACATGTTTCTGGACACAGGACTCTTGCACCTGCAAGTGTGCTCAGGTAGA
CGGCCATGCGACGTCGAGTACAGAACGACTACAACACGCTGATTTTCATC
TCCCGGCTTTCGGTAAAACACAGGTTTGTAGCCACGAGCAAACGCCGGGA
CGAGTACCTCAAAACGTTCGAACCAGAGCAAGAAGCAGATGAAGAAGGAG
ACGGAATTTCCGAGGGAAAAGCAGGCACTATGCGAGAAACCCGCGGAAGC
ACCAGCGAGACGACGGACGCAAGAGCAACCTCGGTGGAACGAACAAGTAC
ACAAGAGGGTAGGCGTGCCGGCACTGGCACGTCGGAATGGAAGGCAAGAA
AGAAACAAAGTTCGACGGCTGGAAAGGAGGGCAAGGTTGCGGCGGTGGGG
AACGCTGCTGAGGCAGGGCGGAAGCGGCAAGCGGACCGAGACCTCATAGA
AGAGCAGCTGGAGAAGGAAGCGTTGGCAATCTTCGAAGAAATGAAGGAGT
GCATGATCTACCACGACCTGTACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig131:302..2177+

>mRNA_E-fasciculatus_F_contig131.2344.1 ID=mRNA_E-fasciculatus_F_contig131.2344.1|Name=mRNA_E-fasciculatus_F_contig131.2344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig131:302..2177+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACAGGCACCTGTTCAGCGGCAAGGCCGAAGTCACGATGTACAGGCA
CCTGTTCAGCGGCAAGGCCGAAGTCACGGTGACGGGGGACGCCTCAAGCT
TTGCGCGGCGCGCTCTGGTTGCGTCCGTGTCTCACGCTGGAAAAATAGTC
GAACCGGCGTCTCTATCGGCGACGATCGATATCTCGCCTCCTGCCATCAC
AGACCCTGAAGCACCAGCGGCGGCGGAAAACGATGGTCCGGGACCCCTGG
CGAGCGCCGTCTTGATTGAACAGGCCAAGAAGGCCGGGGCGACAGAGGAG
GTGACGGGGGACGCCTCAAGCTTTGCGCGGCGCGCTCTGGTTGCGTCCGT
GTCTCACGCTGGAAAAATAGTCGAACCGGCGTCTCTATCGGCGACGATCG
ATATCTCGCCTCCTGCCATCACAGACCCTGAAGCACCAGCGGCGGCGGAA
AACGATGGTCCGGGACCCCTGGCGAGCGCCGTCTTGATTGAACAGGCCAA
GAAGGCCGGGGCGACAGAGGAGGAAATGTGGGAGGGCACACTTCCACCCT
TGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCATACGTAAGG
CTTAAGGAACCCATCACTGTCTACGGCACTATTTGCCGCGCCGATTGGGT
TGACGGCGCGTCCAACGTCTGCCGAGATACATCGGAGGGAGGGGAGAAGA
GAGAGGAAGACTGGGAACCTTCCAACTGTTCCATCTGCGCCTTTTTCTCC
GTCAGCCCGTGCAAGGGAATTTTCGAGAGGAAATGTGGGAGGGCACACTT
CCACCCTTGTTGGCCCACCACCGTCAATTCCCAAGTGAACCAGGAGCATA
CGTAAGGCTTAAGGAACCCATCACTGTCTACGGCACTATTTGCCGCGCCG
ATTGGGTTGACGGCGCGTCCAACGTCTGCCGAGATACATCGGAGGGAGGG
GAGAAGAGAGAGGAAGACTGGGAACCTTCCAACTGTTCCATCTGCGCCTT
TTTCTCCGTCAGCCCGTGCAAGGGAATTTTCGAGAGGTTTGTAGCCACGA
GCAAACGCCGGGACGAGTACCTCAAAACGTTCGAACCAGAGCAAGAAGCA
GATGAAGAAGGAGACGGAATTTCCGAGGGAAAAGCAGGCACTATGCGAGA
AACCCGCGGAAGCACCAGCGAGACGACGGACGCAAGAGCAACCTCGGTGG
AACGAACAAGTACACAAGAGGGTAGGCGTGCCGGCACTGGCACGTCGGAA
TGGAAGGCAAGAAAGAAACAAAGTTCGACGGCTGGAAAGGAGGGCAAGGT
TGCGGCGGTGGGGAACGCTGCTGAGGCAGGGCGGAAGCGGCAAGCGGACC
GAGACCTCATAGAAGAGCAGCTGGAGAAGGAAGCGTTGGCAATCTTCGAA
GAAATGAAGGAGTGCATGATCTACCACGACCTGTACTGAGTTTGTAGCCA
CGAGCAAACGCCGGGACGAGTACCTCAAAACGTTCGAACCAGAGCAAGAA
GCAGATGAAGAAGGAGACGGAATTTCCGAGGGAAAAGCAGGCACTATGCG
AGAAACCCGCGGAAGCACCAGCGAGACGACGGACGCAAGAGCAACCTCGG
TGGAACGAACAAGTACACAAGAGGGTAGGCGTGCCGGCACTGGCACGTCG
GAATGGAAGGCAAGAAAGAAACAAAGTTCGACGGCTGGAAAGGAGGGCAA
GGTTGCGGCGGTGGGGAACGCTGCTGAGGCAGGGCGGAAGCGGCAAGCGG
ACCGAGACCTCATAGAAGAGCAGCTGGAGAAGGAAGCGTTGGCAATCTTC
GAAGAAATGAAGGAGTGCATGATCTACCACGACCTGTACTGA
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