mRNA_E-fasciculatus_F_contig13088.2336.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13088.2336.1
Unique NamemRNA_E-fasciculatus_F_contig13088.2336.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: D8LMH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.430e-18
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   34 KVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPV 150
            +VPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPV
Sbjct:  341 EVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPV 379
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: A0A397ER62_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ER62_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-15
Identity = 31/64 (48.44%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   16 VLSSSLKVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            V +++ ++P  NP G+YL+KLF  G+WR++EVDD +PLD  G+ V+ +S  P E+WP LL+K I
Sbjct:  143 VTATNRRIPTVNPGGKYLVKLFVMGKWRKIEVDDRMPLDDQGKVVVLSSSQPSEIWPTLLAKAI 206
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: A0A7S2WPI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPI0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.460e-15
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   40 PCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            P YNP GRY+IKL+ +G WR +++DD +PLDA+G  V A++  PLELWP+LLSK +
Sbjct:  113 PVYNPMGRYVIKLWCSGAWRGLDLDDWMPLDASGECVFASTVHPLELWPMLLSKAV 168
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: A0A482RSF0_9ARCH (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSF0_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 5.070e-15
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   40 PCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            P YNP G+Y +KLF AG+WR+V VDDS+P+++ G+  +A S D LELWP+LLSK I
Sbjct:  205 PVYNPAGKYAVKLFLAGKWRKVYVDDSLPVNSKGQLAVAHSVDTLELWPILLSKAI 260
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: W4GWQ1_9STRA (Calpain catalytic domain-containing protein n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GWQ1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.350e-15
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   16 VLSSSLKVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            V +++ ++P  NP G+YL+KLF  G+WR+VEVDD +PLD  G+ V+ +S  P E+WP LL+K I
Sbjct:  339 VTATNRRIPTVNPGGKYLVKLFVMGKWRKVEVDDRMPLDDQGKVVVLSSSQPSEIWPTLLAKAI 402
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: T0QRC4_SAPDV (Calpain catalytic domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QRC4_SAPDV)

HSP 1 Score: 75.9 bits (185), Expect = 1.860e-14
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   34 KVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            KVP  NP G+YL+KL+  G+WRRVEVDD +PLD  G+ ++ +S  P E+WP LL+K I
Sbjct:  337 KVPVANPGGKYLVKLYVLGKWRRVEVDDRLPLDKNGKVIVLSSTLPTEIWPSLLAKAI 394
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: A0A1Y2EMW3_9FUNG (Calpain catalytic domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EMW3_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 8.900e-14
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   37 VPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            +P YN  G+Y++KL+  G WR++ VDDSIPLDA GRP++  S    ELWPL+LSK I
Sbjct:  252 MPIYNSSGKYIVKLYWLGNWRKITVDDSIPLDAKGRPLLVRSALQHELWPLILSKAI 308
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: A0A267FKK3_9PLAT (Calpain catalytic domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FKK3_9PLAT)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-13
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    4 FTFGVLSSSLKVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            ++ G L  S  +P YNP G+Y+++LF  G+WR++ VDDS+PLD  GR ++  +   LELWP LL+K +
Sbjct:  160 YSIGKLGKSPNIPVYNPYGKYVVRLFWLGQWRKIYVDDSLPLDECGRCLLPMTARFLELWPALLTKAL 227
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BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: A0A1V9ZIS5_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIS5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   34 KVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            ++P  NP G+YL+KLF  G+WRRVEVDD +PLD   R VI +S  P E+WP LL+K +
Sbjct:  338 RLPVCNPGGKYLVKLFVLGKWRRVEVDDRLPLDKASRVVILSSTLPSEIWPSLLAKAV 395
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Match: F4P4B4_BATDJ (Calpain catalytic domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P4B4_BATDJ)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-13
Identity = 28/57 (49.12%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   37 VPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPVIAASEDPLELWPLLLSKVI 207
            +P YNP G+Y++KLF  G WR++ VDD IP+DA+G+P++ +S    E+WPLL+ K +
Sbjct:  347 IPMYNPSGKYIVKLFWLGAWRKITVDDRIPIDASGKPLMISSPATTEIWPLLICKAL 403
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13088.2336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH7_ECTSI1.430e-1897.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A397ER62_9STRA2.500e-1548.44Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S2WPI0_9STRA3.460e-1557.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482RSF0_9ARCH5.070e-1558.93Calpain catalytic domain-containing protein (Fragm... [more]
W4GWQ1_9STRA5.350e-1550.00Calpain catalytic domain-containing protein n=14 T... [more]
T0QRC4_SAPDV1.860e-1455.17Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A1Y2EMW3_9FUNG8.900e-1456.14Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A267FKK3_9PLAT1.190e-1345.59Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A1V9ZIS5_9STRA1.210e-1355.17Calpain catalytic domain-containing protein n=1 Ta... [more]
F4P4B4_BATDJ1.210e-1349.12Calpain catalytic domain-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13088contigE-fasciculatus_F_contig13088:981..1630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog112098.XP_008609458.1
Preferred nameADGB
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0043170,GO:0044238,GO:0044424,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.955851-CDS-E-fasciculatus_F_contig13088:980..11271622927812.955851-CDS-E-fasciculatus_F_contig13088:980..1127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13088 981..1127 +
1695995705.3778903-CDS-E-fasciculatus_F_contig13088:980..11271695995705.3778903-CDS-E-fasciculatus_F_contig13088:980..1127Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13088 981..1127 +
1622927813.0299354-CDS-E-fasciculatus_F_contig13088:1570..16301622927813.0299354-CDS-E-fasciculatus_F_contig13088:1570..1630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13088 1571..1630 +
1695995705.3893256-CDS-E-fasciculatus_F_contig13088:1570..16301695995705.3893256-CDS-E-fasciculatus_F_contig13088:1570..1630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13088 1571..1630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13088.2336.1prot_E-fasciculatus_F_contig13088.2336.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13088 981..1630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13088.2336.1

>prot_E-fasciculatus_F_contig13088.2336.1 ID=prot_E-fasciculatus_F_contig13088.2336.1|Name=mRNA_E-fasciculatus_F_contig13088.2336.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
FFTFGVLSSSLKVPCYNPCGRYLIKLFAAGRWRRVEVDDSIPLDATGRPV
IAASEDPLELWPLLLSKVI
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mRNA from alignment at E-fasciculatus_F_contig13088:981..1630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13088.2336.1 ID=mRNA_E-fasciculatus_F_contig13088.2336.1|Name=mRNA_E-fasciculatus_F_contig13088.2336.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=650bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13088:981..1630+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCTTTACCTTTGGCGTCTTGTCGTCGTCATTGAAGGTGCCGTGCTACAA
CCCCTGTGGACGATACCTGATCAAGCTGTTCGCCGCTGGGCGTTGGAGGA
GGGTGGAGGTAGACGACTCTATCCCACTCGATGCTACAGGGCGTCCGGTG
CGTTCAATCCGTTGCACGCAATACGTGCGGTACTCCAAGAAATCCTTCAT
TTTTGTAGCTGGTGCTCAGAATCGGTCCGAGAAGGAGACGACGTTAGAGG
TTGAGAATGCGGATATGTTATGCTTGATACAGATTTCCGCGAAGAGGGTA
GACGTGGAAGAAATACTCGTGGTATGCTGGTGACCTTCTTGAAAACTAGT
TGCCGGTTTTCCATCGACCCTACCCGCGGCTCTTATCGTGATGTTGAATT
CTACGTACTCCCCTTCGCACTAGTCCTAAAGGGGCCCCACCCCATTCAAA
GTATATACAACAAGCGTGTCCCAAATCTTGAACCAAACGAGAGTACAAAA
GGGTGGGTGCATGTGATGCGTACGATGCAATATGTCTTTGCAGAAACAGC
ACAGATAACACAAGTGTTTTTCCGCTGCCATTCGCGTCAGGTTATCGCTG
CCAGCGAGGACCCGTTGGAGTTGTGGCCCCTCCTGCTTTCGAAGGTGATA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13088:981..1630+

>mRNA_E-fasciculatus_F_contig13088.2336.1 ID=mRNA_E-fasciculatus_F_contig13088.2336.1|Name=mRNA_E-fasciculatus_F_contig13088.2336.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13088:981..1630+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCTTTACCTTTGGCGTCTTGTCGTCGTCATTGAAGGTGCCGTGCTACAA
CCCCTGTGGACGATACCTGATCAAGCTGTTCGCCGCTGGGCGTTGGAGGA
GGGTGGAGGTAGACGACTCTATCCCACTCGATGCTACAGGGCGTCCGTTC
TTTACCTTTGGCGTCTTGTCGTCGTCATTGAAGGTGCCGTGCTACAACCC
CTGTGGACGATACCTGATCAAGCTGTTCGCCGCTGGGCGTTGGAGGAGGG
TGGAGGTAGACGACTCTATCCCACTCGATGCTACAGGGCGTCCGGTTATC
GCTGCCAGCGAGGACCCGTTGGAGTTGTGGCCCCTCCTGCTTTCGAAGGT
GATAGTTATCGCTGCCAGCGAGGACCCGTTGGAGTTGTGGCCCCTCCTGC
TTTCGAAGGTGATA
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