mRNA_E-fasciculatus_F_contig13087.2335.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13087.2335.1
Unique NamemRNA_E-fasciculatus_F_contig13087.2335.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A6H5JLL3_9PHAE (Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL3_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 4.620e-81
Identity = 129/154 (83.77%), Postives = 132/154 (85.71%), Query Frame = 1 
Query:    1 QQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            Q+VAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKE K               G G   +KEE IAY+LKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYG RRNVAKTFVGTPCWMAPEVMEQV
Sbjct:   79 QEVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEGK---------------GDG---MKEECIAYVLKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGARRNVAKTFVGTPCWMAPEVMEQV 214
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A835Z4G7_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G7_9STRA)

HSP 1 Score: 213 bits (543), Expect = 5.030e-65
Identity = 101/154 (65.58%), Postives = 117/154 (75.97%), Query Frame = 1 
Query:    1 QQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            Q+V VMR+CDHPNV+ CY SFVH N+LWLVME + KGSC HVM+V+K+    G                   +KE+WIAYIL++TL GL+YFH  GQIHRDIKAGNILL  DGRV+LADFGVAGWL+GYGNRR+  KTFVGTPCWMAPEVMEQV
Sbjct:   68 QEVNVMRLCDHPNVVRCYCSFVHGNQLWLVMELLDKGSCFHVMSVSKRMGNAG------------------GMKEDWIAYILRETLCGLQYFHQNGQIHRDIKAGNILLSSDGRVQLADFGVAGWLIGYGNRRSTTKTFVGTPCWMAPEVMEQV 203
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A4D9D9M6_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9M6_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.490e-60
Identity = 96/154 (62.34%), Postives = 117/154 (75.97%), Query Frame = 1 
Query:    1 QQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            Q+V +MRM DHPN+L CY SFVHE +LWLVM+ M KGSCLHVM  AK+                 +G+G   ++EEW+AYIL+++LQGLKYFHDQGQIHRD+KAGNILL  +G V+LADFGV+GWL+  G+RR   KTFVGTPCWMAPEVMEQ+
Sbjct:   60 QEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCLHVMTQAKRMG---------------MGEG---MREEWLAYILRESLQGLKYFHDQGQIHRDVKAGNILLDGEGHVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQI 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A7S2XYH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH4_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.820e-54
Identity = 89/153 (58.17%), Postives = 108/153 (70.59%), Query Frame = 1 
Query:    1 QQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQ 459
            Q+V  MR+ +H NVL C  SFV   +LWLVM+FM +GSCLHV+  ++K                  G+G   +KEEW+AY+LKQTLQGL+YFH  GQ+HRD+KAGNILL   G V+LADFGVAGWL+ YG R +  KTFVGTPCWMAPEVMEQ
Sbjct:   60 QEVQTMRLAEHENVLKCQCSFVEGQQLWLVMDFMDQGSCLHVLTQSEKHG---------------FGRG---MKEEWLAYVLKQTLQGLEYFHRSGQVHRDVKAGNILLSSTGDVRLADFGVAGWLIRYGERHSTKKTFVGTPCWMAPEVMEQ 194
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A067CRE8_SAPPC (STE/STE20/FRAY protein kinase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRE8_SAPPC)

HSP 1 Score: 184 bits (468), Expect = 1.860e-54
Identity = 91/153 (59.48%), Postives = 114/153 (74.51%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            +V  M+M +HPNVL+CY SFVH+++LWLVM+ M+KGSCLH MN  KK               K +G+G   +KEE +A ILK+TLQGL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   63 EVQTMKMTNHPNVLNCYCSFVHKDQLWLVMQLMNKGSCLHAMNQLKK---------------KSLGEG---MKEELLAVILKETLQGLQYFHENGQIHRDIKAGNILLDSNGHVLIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 197
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A662WTR8_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTR8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.590e-54
Identity = 88/153 (57.52%), Postives = 114/153 (74.51%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            +V  M+M +HPNVL CY SFVH+++LWLV + M+KGSCLHVMN+ KK               K +G+G   LKEE++A +L ++L+GL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   99 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVTQLMNKGSCLHVMNLLKK---------------KGLGEG---LKEEFVAVVLNESLKGLQYFHENGQIHRDIKAGNILLDSEGHVVIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 233
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: H3HC15_PHYRM (Protein kinase domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=H3HC15_PHYRM)

HSP 1 Score: 183 bits (464), Expect = 7.970e-54
Identity = 90/153 (58.82%), Postives = 114/153 (74.51%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            +V  M+M +HPNVL CY SFVH+++LWLV + M+KGSCLHVMN+ KK               K +G+G   LKEE++A IL +TL+GL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   58 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVTQLMNKGSCLHVMNLLKK---------------KGLGEG---LKEEFVAVILHETLKGLQYFHENGQIHRDIKAGNILLDSEGHVVIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 192
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A6G0X975_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X975_9STRA)

HSP 1 Score: 183 bits (464), Expect = 7.970e-54
Identity = 90/153 (58.82%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            +V  M+M +HPNVL CY SFVH+++LWLVM+ M+KGSCLH MN+ KK               K +G+G   +KEE  A IL++TLQGL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   64 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVMQLMNKGSCLHAMNILKK---------------KGLGEG---MKEELCAVILRETLQGLQYFHENGQIHRDIKAGNILLDGEGNVLIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 198
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: A0A1V9ZI16_9STRA (Kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZI16_9STRA)

HSP 1 Score: 183 bits (464), Expect = 8.580e-54
Identity = 91/153 (59.48%), Postives = 113/153 (73.86%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            +V  M+M +HPNVL+CY SFVH+++LWLVM+ M+KGSCLH MN  KK               K +G+G   +KEE  A ILK+TLQGL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   72 EVQTMKMTNHPNVLNCYCSFVHKDQLWLVMKLMNKGSCLHAMNQLKK---------------KSLGEG---MKEELCAIILKETLQGLQYFHENGQIHRDIKAGNILLDSNGHVLIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 206
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Match: F0WMH6_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMH6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.130e-53
Identity = 90/153 (58.82%), Postives = 112/153 (73.20%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQKPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 462
            +V  M+M +HPNVL CY SFVH ++LWLV + M+KGSCLHVMNV KK               K +G+G   LKEE++A IL +TL+GL+YFH+ GQIHRDIKAGNIL+   G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   59 EVQTMKMTNHPNVLKCYCSFVHRDQLWLVTQLMNKGSCLHVMNVLKK---------------KGLGEG---LKEEFLAVILHETLKGLQYFHENGQIHRDIKAGNILMDSQGHVVIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13087.2335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLL3_9PHAE4.620e-8183.77Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835Z4G7_9STRA5.030e-6565.58Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A4D9D9M6_9STRA1.490e-6062.34Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A7S2XYH4_9STRA1.820e-5458.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067CRE8_SAPPC1.860e-5459.48STE/STE20/FRAY protein kinase n=4 Tax=Saprolegniac... [more]
A0A662WTR8_9STRA5.590e-5457.52Protein kinase domain-containing protein n=2 Tax=N... [more]
H3HC15_PHYRM7.970e-5458.82Protein kinase domain-containing protein n=25 Tax=... [more]
A0A6G0X975_9STRA7.970e-5458.82Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A1V9ZI16_9STRA8.580e-5459.48Kinase n=1 Tax=Thraustotheca clavata TaxID=74557 R... [more]
F0WMH6_9STRA2.130e-5358.82Protein kinase putative n=1 Tax=Albugo laibachii N... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13087contigE-fasciculatus_F_contig13087:1959..2858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue2.2e-44
Seed eggNOG ortholog112098.XP_008611360.1
Preferred nameSTK39
KEGG koko:K08835
GOsGO:0000166,GO:0000187,GO:0000287,GO:0001885,GO:0001894,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0002028,GO:0002064,GO:0003008,GO:0003013,GO:0003158,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006971,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007272,GO:0007275,GO:0007346,GO:0007399,GO:0007422,GO:0007444,GO:0008015,GO:0008065,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008217,GO:0008362,GO:0008366,GO:0009628,GO:0009651,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010766,GO:0010941,GO:0010959,GO:0016020,GO:0016301,GO:0016310,GO:0016323,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0022898,GO:0023014,GO:0023016,GO:0023051,GO:0023052,GO:0023056,GO:0030104,GO:0030154,GO:0030554,GO:0030855,GO:0031098,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032101,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032409,GO:0032410,GO:0032411,GO:0032412,GO:0032413,GO:0032414,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032890,GO:0032891,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034762,GO:0034763,GO:0034764,GO:0034765,GO:0034766,GO:0034767,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0036003,GO:0036094,GO:0036211,GO:0036251,GO:0036438,GO:0040003,GO:0042325,GO:0042326,GO:0042327,GO:0042335,GO:0042538,GO:0042592,GO:0042802,GO:0042981,GO:0043067,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043266,GO:0043267,GO:0043268,GO:0043269,GO:0043270,GO:0043271,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0044057,GO:0044058,GO:0044070,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045446,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046777,GO:0046872,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050727,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0051952,GO:0051953,GO:0051955,GO:0051956,GO:0060249,GO:0060255,GO:0060429,GO:0060457,GO:0060562,GO:0061392,GO:0061393,GO:0061404,GO:0061416,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071214,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071476,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072697,GO:0080090,GO:0080134,GO:0090186,GO:0090188,GO:0097159,GO:0097367,GO:0098590,GO:0104004,GO:0140096,GO:1901016,GO:1901017,GO:1901265,GO:1901363,GO:1901379,GO:1901380,GO:1901564,GO:1902305,GO:1902306,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1903789,GO:1903792,GO:1903959,GO:1903960,GO:1904062,GO:1904063,GO:1905407,GO:1905408,GO:1990778,GO:2000112,GO:2000649,GO:2000650,GO:2001023,GO:2001024,GO:2001141
EggNOG free text desc.stress-activated protein kinase signaling cascade
EggNOG OGsKOG0582@1,KOG0582@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons4
Model size468
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13087.2335.1prot_E-fasciculatus_F_contig13087.2335.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13087 1959..2843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.870115-CDS-E-fasciculatus_F_contig13087:1958..21351622927812.870115-CDS-E-fasciculatus_F_contig13087:1958..2135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 1959..2135 -
1695995705.2753258-CDS-E-fasciculatus_F_contig13087:1958..21351695995705.2753258-CDS-E-fasciculatus_F_contig13087:1958..2135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 1959..2135 -
1622927812.884487-CDS-E-fasciculatus_F_contig13087:2311..23801622927812.884487-CDS-E-fasciculatus_F_contig13087:2311..2380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 2312..2380 -
1695995705.2992861-CDS-E-fasciculatus_F_contig13087:2311..23801695995705.2992861-CDS-E-fasciculatus_F_contig13087:2311..2380Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 2312..2380 -
1622927812.896433-CDS-E-fasciculatus_F_contig13087:2505..25801622927812.896433-CDS-E-fasciculatus_F_contig13087:2505..2580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 2506..2580 -
1695995705.3434277-CDS-E-fasciculatus_F_contig13087:2505..25801695995705.3434277-CDS-E-fasciculatus_F_contig13087:2505..2580Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 2506..2580 -
1622927812.9088879-CDS-E-fasciculatus_F_contig13087:2711..28431622927812.9088879-CDS-E-fasciculatus_F_contig13087:2711..2843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 2712..2843 -
1695995705.3594542-CDS-E-fasciculatus_F_contig13087:2711..28431695995705.3594542-CDS-E-fasciculatus_F_contig13087:2711..2843Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13087 2712..2843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.9217188-UTR-E-fasciculatus_F_contig13087:2843..28581622927812.9217188-UTR-E-fasciculatus_F_contig13087:2843..2858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13087 2844..2858 -
1695995705.3686285-UTR-E-fasciculatus_F_contig13087:2843..28581695995705.3686285-UTR-E-fasciculatus_F_contig13087:2843..2858Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13087 2844..2858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13087.2335.1

>prot_E-fasciculatus_F_contig13087.2335.1 ID=prot_E-fasciculatus_F_contig13087.2335.1|Name=mRNA_E-fasciculatus_F_contig13087.2335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
MRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEAKYGLQ
KPFLVASVKRIGKGAIQLKEEWIAYILKQTLQGLKYFHDQGQIHRDIKAG
NILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQVS
T
back to top

mRNA from alignment at E-fasciculatus_F_contig13087:1959..2858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13087.2335.1 ID=mRNA_E-fasciculatus_F_contig13087.2335.1|Name=mRNA_E-fasciculatus_F_contig13087.2335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13087:1959..2858- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAGGTGGCGGTGATGCGTATGTGCGATCATCCGAATGTTCTTAGCTG
CTATGCTTCGTTCGTGCATGAAAATGAGCTGTGGCTGGTCATGGAGTTCA
TGAGCAAGGGATCGTGCCTGCACGTCATGAACGTCGCTAAGAAGGAGGTG
ATAAGACGCAGCCGGTTTTTCTGCCATTGAGTCGCTCAGGTTTTAAGGGC
TTGACGCACTAGGGAGGTACCGACTTCGGTTTCAACCCGTACCTTGGAGA
GCTAGAGGCCACTACCGCCATGTTAGAGGCAAAGTACGGTCTACAGAAGC
CTTTTTTGGTCGCAAGCGTCAAACGTATCGGTAAAGGTGCAATTCAGTTG
AAAGTGTCCTTGCTTGCGGTGCTTGACTATAAATACTCGTGAGTACTTGA
CTGCACGCACGGGGATAATGATCCTCTCGTGCCCCTTCTCTGGTGTTGCC
TCGGAAGGGCAAGGGGGAAGGCATGAAGGAAGAGTGGATCGCGTACATCT
TGAAACAGACTCTGCAAGGCCTCAAGTACTTCCACGACCAGGGGCAGGTA
AGCCTTTGCCGCCGGACATGTTCACTCAGTTGATGCGTCCAAATTGAATT
CAATAGGTTGCAGACCCGTCAAAGGTTGTTTTTCCCGTGGCAGTTTTACC
ATGTGCCGACTGTGTGCAATTCGGGGCGGTATGTGGGTACGAATGCTGAA
TGTGCTTGTGTTCAATAACACAGATTCATCGAGACATCAAGGCCGGAAAC
ATTCTATTGGGCGAGGACGGTCGAGTAAAGCTAGCCGATTTCGGGGTAGC
CGGATGGCTTGTAGGTTACGGCAACCGGCGAAATGTCGCTAAAACGTTCG
TGGGGACACCCTGCTGGATGGCGCCGGAGGTGATGGAACAGGTCAGCACA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13087:1959..2858-

>mRNA_E-fasciculatus_F_contig13087.2335.1 ID=mRNA_E-fasciculatus_F_contig13087.2335.1|Name=mRNA_E-fasciculatus_F_contig13087.2335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13087:1959..2858- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTATGTGCGATCATCCGAATGTTCTTAGCTGCTATGCTTCGTTCGT
GCATGAAAATGAGCTGTGGCTGGTCATGGAGTTCATGAGCAAGGGATCGT
GCCTGCACGTCATGAACGTCGCTAAGAAGGAGATGCGTATGTGCGATCAT
CCGAATGTTCTTAGCTGCTATGCTTCGTTCGTGCATGAAAATGAGCTGTG
GCTGGTCATGGAGTTCATGAGCAAGGGATCGTGCCTGCACGTCATGAACG
TCGCTAAGAAGGAGGCAAAGTACGGTCTACAGAAGCCTTTTTTGGTCGCA
AGCGTCAAACGTATCGGTAAAGGTGCAATTCAGTTGAAAGCAAAGTACGG
TCTACAGAAGCCTTTTTTGGTCGCAAGCGTCAAACGTATCGGTAAAGGTG
CAATTCAGTTGAAAGAAGAGTGGATCGCGTACATCTTGAAACAGACTCTG
CAAGGCCTCAAGTACTTCCACGACCAGGGGCAGGAAGAGTGGATCGCGTA
CATCTTGAAACAGACTCTGCAAGGCCTCAAGTACTTCCACGACCAGGGGC
AGATTCATCGAGACATCAAGGCCGGAAACATTCTATTGGGCGAGGACGGT
CGAGTAAAGCTAGCCGATTTCGGGGTAGCCGGATGGCTTGTAGGTTACGG
CAACCGGCGAAATGTCGCTAAAACGTTCGTGGGGACACCCTGCTGGATGG
CGCCGGAGGTGATGGAACAGGTCAGCACAATTCATCGAGACATCAAGGCC
GGAAACATTCTATTGGGCGAGGACGGTCGAGTAAAGCTAGCCGATTTCGG
GGTAGCCGGATGGCTTGTAGGTTACGGCAACCGGCGAAATGTCGCTAAAA
CGTTCGTGGGGACACCCTGCTGGATGGCGCCGGAGGTGATGGAACAGGTC
AGCACA
back to top