mRNA_E-fasciculatus_F_contig13085.2333.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI) HSP 1 Score: 265 bits (678), Expect = 7.800e-80 Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 1
Query: 1 RVVDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
RVVDFVPSLPDSKV+AISSLGYGCLNKVVLEFP AFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY
Sbjct: 1494 RVVDFVPSLPDSKVDAISSLGYGCLNKVVLEFPRAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 1623
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE) HSP 1 Score: 265 bits (677), Expect = 1.080e-79 Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 1
Query: 1 RVVDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
RVVDFVPSLPDSKV+AISSLGYGCLNKVVLEFP AFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVAL+PGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY
Sbjct: 2243 RVVDFVPSLPDSKVDAISSLGYGCLNKVVLEFPRAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALIPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 2372
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A7S3UVW7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVW7_HETAK) HSP 1 Score: 120 bits (300), Expect = 1.250e-29 Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 7 VDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
V F P LP+ K+ A + LG+G LNKVVLEF FW + L H + GDFY+FLDL++ GRP+LVA++ +A R E E+ +T RC+ VLRR+F E V AP++ + WG D++A GSY
Sbjct: 245 VVFDPPLPEHKMAAANRLGFGLLNKVVLEFRGVFWDTR--GHNFLGHAGDRRGDFYMFLDLSHATGRPLLVAILAAGEAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSY 370
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A2K1L6H4_PHYPA (SWIRM domain-containing protein n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L6H4_PHYPA) HSP 1 Score: 114 bits (284), Expect = 9.040e-27 Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 1 RVVDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
+ F PSLP+ K +I LG+G LNKV+LEFP+AFW + A S G ++F +L G P+LVALV G+ A E+E +GE + +LRR+F E VP P+ A +RWG D ++RG+Y
Sbjct: 1053 ETIQFSPSLPEWKTASIKRLGFGVLNKVLLEFPSAFWDESVDYFGAAAECSSARGKCFMFWNLKRTSGHPILVALVVGKAAKEGEKEESGELVEHAVKILRRLFGEEAVPDPVATAVTRWGKDPFSRGAY 1182
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A8B7C3E1_PHODC (lysine-specific histone demethylase 1 homolog 1 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A8B7C3E1_PHODC) HSP 1 Score: 110 bits (276), Expect = 1.030e-25 Identity = 60/130 (46.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 7 VDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSY 390
++FVP LP K EAI LG+G LNKV + FP FW ++ + L S G+F+LF +++ G P+LVALV GE A + E S R L VLRRIF + VP P+ A +RWGSDK+A GSY
Sbjct: 517 IEFVPDLPPQKQEAIKRLGFGLLNKVAMLFPYDFWNGEIDTFGHLTEDSSQRGEFFLFYSYSSVSGGPLLVALVAGESAIKFETTSPVVHVERVLEVLRRIFSPKGIEVPKPIQAICTRWGSDKFAYGSY 646
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A1Y1IST8_KLENI (Amine oxidase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IST8_KLENI) HSP 1 Score: 108 bits (269), Expect = 9.500e-25 Identity = 53/128 (41.41%), Postives = 73/128 (57.03%), Query Frame = 1
Query: 7 VDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
V F P LPD K E I LGYG LNKVV++FP FW + G+ ++F +L +CG+P+L+AL+ GE A AE + G + VLRR+F VP P +RWGSD+++RG+Y
Sbjct: 946 VRFSPPLPDWKQEVIQRLGYGNLNKVVMQFPTCFWDTSVDYFGAAVEDGHDRGNCFMFWNLHRVCGQPILLALIVGEAAQAAEARPDADVIGHAVAVLRRLFGPDAVPEPSTTRVTRWGSDRFSRGAY 1073
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: T1L5N4_TETUR (Amino_oxidase domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1L5N4_TETUR) HSP 1 Score: 104 bits (259), Expect = 1.630e-24 Identity = 59/131 (45.04%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 7 VDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETP---GDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
+ F+P LPD KV+AI LGYG LNKVVL F AFW L H+ T G+ +LF L PVL+ALV GE A E + GRCLTVL+ IF VP P +RW +D W++GSY
Sbjct: 86 IQFIPPLPDWKVQAIQRLGYGNLNKVVLCFDRAFW---DQDSNLFGHIGSTTASRGELFLFWSLYKS---PVLMALVAGEAANIMENVTDDVIVGRCLTVLKTIFGTTNVPQPKETVVTRWRADPWSKGSY 210
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A6I9SA50_ELAGV (lysine-specific histone demethylase 1 homolog 1 n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9SA50_ELAGV) HSP 1 Score: 107 bits (266), Expect = 2.040e-24 Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 7 VDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSY 390
++FVP LP K EAI LG+G LNKV + FP FW ++ + L S G+F+LF +++ G P+LVALV GE A + E S + L VL+RIF + VP P+ +RWGSDK+A GSY
Sbjct: 279 IEFVPELPPQKQEAIKRLGFGLLNKVAMLFPYDFWNGEIDTFGHLTEDSSERGEFFLFYSYSSVSGGPLLVALVAGESAIKFETTSPVVHVEKVLEVLKRIFAPKGIEVPKPIQVICTRWGSDKFAYGSY 408
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A0D9XLT8_9ORYZ (SWIRM domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XLT8_9ORYZ) HSP 1 Score: 106 bits (265), Expect = 3.290e-24 Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 1 RVVDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
+ + F PSLPD K+ +I LG+G LNK+VLEFP FW + A ++ G ++F +L G PVL+AL+ G+ A + S+ + + VLRR+F +V+VP P+ + + WGSD ++RG+Y
Sbjct: 1073 QTIKFSPSLPDWKLSSIDRLGFGVLNKIVLEFPEVFWDDNVDYFGATAEETDLRGQCFMFWNLKKTVGAPVLIALLVGKAAIDGQSISSDDHVNNAMVVLRRLFRDVSVPDPVASVVTNWGSDPFSRGAY 1202
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Match: A0A1D6K7D1_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6K7D1_MAIZE) HSP 1 Score: 105 bits (263), Expect = 6.040e-24 Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 1
Query: 7 VDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVSETPGDFYLFLDLTNMCGRPVLVALVPGEQAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSY 390
++F PSLPD KV +I+ LG+G LNK+VLEFP FW + A ++ G ++F +L G PVL+AL+ G+ A + S+G+ + VLR++F +VP P+ + + WG D ++RG+Y
Sbjct: 1044 INFSPSLPDWKVSSINRLGFGVLNKIVLEFPEVFWDDNVDYFGATAEETDLRGQCFMFWNLRKTAGAPVLIALLVGKAAIDGQSISSGDHVNNAMVVLRKLFKNASVPDPVASVVTNWGLDPFSRGAY 1171 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13085.2333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13085.2333.1 >prot_E-fasciculatus_F_contig13085.2333.1 ID=prot_E-fasciculatus_F_contig13085.2333.1|Name=mRNA_E-fasciculatus_F_contig13085.2333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp RVVDFVPSLPDSKVEAISSLGYGCLNKVVLEFPNAFWLVKMGSRRLLAHVback to top mRNA from alignment at E-fasciculatus_F_contig13085:167..3432- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13085.2333.1 ID=mRNA_E-fasciculatus_F_contig13085.2333.1|Name=mRNA_E-fasciculatus_F_contig13085.2333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3266bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13085:167..3432- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13085:167..3432- >mRNA_E-fasciculatus_F_contig13085.2333.1 ID=mRNA_E-fasciculatus_F_contig13085.2333.1|Name=mRNA_E-fasciculatus_F_contig13085.2333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13085:167..3432- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |