mRNA_E-fasciculatus_F_contig13084.2332.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13084.2332.1
Unique NamemRNA_E-fasciculatus_F_contig13084.2332.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13084.2332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13084contigE-fasciculatus_F_contig13084:2952..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927812.6197186-CDS-E-fasciculatus_F_contig13084:2951..29961622927812.6197186-CDS-E-fasciculatus_F_contig13084:2951..2996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13084 2952..2996 +
1695995705.199682-CDS-E-fasciculatus_F_contig13084:2951..29961695995705.199682-CDS-E-fasciculatus_F_contig13084:2951..2996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13084 2952..2996 +
1622927812.633794-CDS-E-fasciculatus_F_contig13084:3293..34851622927812.633794-CDS-E-fasciculatus_F_contig13084:3293..3485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13084 3294..3485 +
1695995705.2105308-CDS-E-fasciculatus_F_contig13084:3293..34851695995705.2105308-CDS-E-fasciculatus_F_contig13084:3293..3485Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13084 3294..3485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13084.2332.1prot_E-fasciculatus_F_contig13084.2332.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13084 2952..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13084.2332.1

>prot_E-fasciculatus_F_contig13084.2332.1 ID=prot_E-fasciculatus_F_contig13084.2332.1|Name=mRNA_E-fasciculatus_F_contig13084.2332.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=79bp
VWGGEKKGAWKANKETIDLSTRTDDGGDGGVEEKEGEKGGPAEKAGNEHE
EAKDEIRDVRPTAASKGCSSQEVRGWLP*
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mRNA from alignment at E-fasciculatus_F_contig13084:2952..3485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13084.2332.1 ID=mRNA_E-fasciculatus_F_contig13084.2332.1|Name=mRNA_E-fasciculatus_F_contig13084.2332.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13084:2952..3485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGGGGTGGCGAGAAAAAGGGCGCTTGGAAGGCTAACAAAGAGGTAAC
AATGAGTAGTCAAAACACTCCAAAGAAGGGGTGACAAGAGTGGTGGTAGT
TCCGAAAACAGGGCTGAAGGAAGCCTTGCTACCGTTGTACTAGGTTAAAC
TTGGCCCATTTAGTTAGGCGAAGACGGATAGAACGTCGCATCGGCAGGTA
CACCTCTCTCTTTTTTTCCGCGAGGCTTCTCAAGGGTTGCATCAGTCTAA
CTGCCGTTGTTACGTTGGATGGTAAAAAGGGACAGCGTTTTAGATTAATG
TGTGTTGTCACCGATATCAACGATCGACCGCAACAAGTGCAGACGATCGA
CTTGTCGACGAGAACCGACGATGGCGGTGATGGTGGCGTGGAAGAGAAAG
AGGGCGAGAAGGGGGGTCCGGCAGAGAAGGCGGGTAATGAGCACGAGGAA
GCCAAGGATGAAATCCGAGACGTGAGGCCTACAGCGGCTTCAAAGGGATG
CAGTTCGCAGGAGGTGCGGGGTTGGCTACCTTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13084:2952..3485+

>mRNA_E-fasciculatus_F_contig13084.2332.1 ID=mRNA_E-fasciculatus_F_contig13084.2332.1|Name=mRNA_E-fasciculatus_F_contig13084.2332.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13084:2952..3485+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGGGGTGGCGAGAAAAAGGGCGCTTGGAAGGCTAACAAAGAGGTGTG
GGGTGGCGAGAAAAAGGGCGCTTGGAAGGCTAACAAAGAGACGATCGACT
TGTCGACGAGAACCGACGATGGCGGTGATGGTGGCGTGGAAGAGAAAGAG
GGCGAGAAGGGGGGTCCGGCAGAGAAGGCGGGTAATGAGCACGAGGAAGC
CAAGGATGAAATCCGAGACGTGAGGCCTACAGCGGCTTCAAAGGGATGCA
GTTCGCAGGAGGTGCGGGGTTGGCTACCTTAGACGATCGACTTGTCGACG
AGAACCGACGATGGCGGTGATGGTGGCGTGGAAGAGAAAGAGGGCGAGAA
GGGGGGTCCGGCAGAGAAGGCGGGTAATGAGCACGAGGAAGCCAAGGATG
AAATCCGAGACGTGAGGCCTACAGCGGCTTCAAAGGGATGCAGTTCGCAG
GAGGTGCGGGGTTGGCTACCTTAG
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