mRNA_E-fasciculatus_F_contig13080.2331.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 499 bits (1286), Expect = 1.560e-176 Identity = 232/264 (87.88%), Postives = 241/264 (91.29%), Query Frame = 1
Query: 1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
MLD SGNK+T+PTSVTK+WLLE+ELYVTDGAIFYCIGS+EGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDG+AKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFC+DLSNPDVFETTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN MHDN QYGFDPHDDSDYLTIA ASKRCNN EV DGGP+AVGIFLHRSSDNAEVYG
Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG 264
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 481 bits (1239), Expect = 6.580e-168 Identity = 229/275 (83.27%), Postives = 240/275 (87.27%), Query Frame = 1
Query: 1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVR---------GFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYGKK 798
MLD SG+K+TAPTSVTK+WLLEAELYVT+GAIFYCIGS+EGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNK+PQETYEGGRSFLNCVSEKLTGETCDG AKND GECRMDIINSEMGYMGFFD+ESYGLTWKVR GFC+DLSNPDVFETTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN MHDN QY +ANNKVYNN+NHGIIASKRCNN +V DGGPDAVGIFLHRSSDNAEVYG K
Sbjct: 46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNK 308
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 5.540e-144 Identity = 195/263 (74.14%), Postives = 222/263 (84.41%), Query Frame = 1
Query: 1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVY 789
MLD G KL P+ +T WLL AELY+T G +FYC G+ GGDC++LRIQSTG DD++EVRGHGGS+YF T+VTSWDTPNK+PQETYE GRSFLNCVSEKLTG+ C+G AKN+ GECRMDIINSE+ Y+G+FD+ESYG+TWKVRGFC+DLSNP+VFE TNVYGD+ SDIHH+YYG YSYGHQGGVWTNN MHDN+QYGFDPHDDSDYLTIA N+VYNN NHGIIASKRCNN EV DGG A GIFLHRSSD A V+
Sbjct: 473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVF 735
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 401 bits (1030), Expect = 8.990e-138 Identity = 186/271 (68.63%), Postives = 214/271 (78.97%), Query Frame = 1
Query: 1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWK--------VRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVY 789
MLD G KL P+ +T WLL AELY+T G +FYC G+ GGDC++LRIQSTG DD++EVRGHGGS+YF T+VTSWDTPNK+PQETYEGGRSFLNCVSEKLTG+ C+G AKN+ GECRMDIINSE+ Y+G+FD+ESYG+TWK VRGFC+DLSNP+VF+ TNVYGD+ SDIHH+YYG YSYGHQGGVWTNN MHDN+QYGFDPHDDSDYLT IIASKRCNN EV DGG AVGIFLHRSSD+A V+
Sbjct: 22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHRSSDDAAVF 280
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 1.810e-134 Identity = 187/262 (71.37%), Postives = 209/262 (79.77%), Query Frame = 1
Query: 4 LDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVY 789
LD S N + P ++ +WLL AEL++T GA+FYC GS GGDCDELRIQSTGP D++EVR HGGSMYF T+VTSWDTPNK PQ TY GGRSFLNCVSEKLTGE C G+A+N+ GECRMDIINSE+GY+G+FD+ESYGLTWKVRGFC+DLSNPDVF+TTNVYG++ SDIHH YYG YSYGHQGGVW NN MHDN QYGFDPHDDSDYLT IIASKRCNN EVYDGGP A GIFLHRSSD A V+
Sbjct: 111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVH 360
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 390 bits (1001), Expect = 4.830e-132 Identity = 182/265 (68.68%), Postives = 211/265 (79.62%), Query Frame = 1
Query: 1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE-TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
+LDS+ T+ T +WLL A+L+VT GA YC G GG+C ELRI+ST D++E+RGHGG++YF T+VTSWD +KPQETY+ GRSF+ CVSE LTGE TC A N+ GECRMDII+SEMGY+G+ +E+YG+TWKVRGFC DLSNPDVF+ NVYGD+K SDIHHMYYGMYS+GHQGGVWTNNLMHDN QYGFDPHDDSDYL IA NKVYNN NHGIIASKRCNN EVYDGG DA GIFLHRS D++EVYG
Sbjct: 35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYG 296
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 321 bits (823), Expect = 1.110e-100 Identity = 160/266 (60.15%), Postives = 189/266 (71.05%), Query Frame = 1
Query: 1 MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTG--ETCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
+LDS+ N + S T WLL +++V +G++ G D GGD LRIQSTG D+YE+RGHGGS+ F T VTSWDT KK Y+ RSF+ CVSE+L +TCDG A N GECRMDII SEMG MG+ AESYG++WKVRG+C + NP+VFE T V GDI +SDI+ MYYG YS+GH GG+WT N MHDN QYGFDPHDDSD L IA N V+ N NHGIIASKRCNN VYDGG AVGIFLHRSSD+ EV+G
Sbjct: 428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWG 691
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 304 bits (779), Expect = 4.830e-99 Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1
Query: 13 SGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
SGN TS T WLL ELYV DG GS+ GGD DELR+ ST + + +R HGGS+ F T V SWDT P E GRS+++ +SE +T E TC+G AKN GE RMDI +SE+GY+G++D+ESYGLTWKVRGFC D SNP+VF+ NVYG++ +SDIHHM +G+Y+YGHQ G W N MHDN YGFDPHDDSD+LTI +N+VYNN HGIIASKRCN EVY G + GIFLHRSSD+A V G
Sbjct: 92 SGN---VSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTN-ETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 304 bits (779), Expect = 1.090e-97 Identity = 151/262 (57.63%), Postives = 182/262 (69.47%), Query Frame = 1
Query: 13 SGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
SGN TS T WLL ELYV DG GS+ GGD DELR+ ST + + +R HGGS+ F T V SWDT P E GRS+++ +SE +T E TC+G AKN GE RMDI +SE+GY+G++D+ESYGLTWKVRGFC D SNP+VF+ NVYG++ +SDIHHM +G+Y+YGHQ G W N MHDN YGFDPHDDSD+LTI +N+VYNN HGIIASKRCN EVY G + GIFLHRSSD+A V G
Sbjct: 92 SGN---VSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTN-ETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 303 bits (776), Expect = 3.450e-97 Identity = 148/251 (58.96%), Postives = 178/251 (70.92%), Query Frame = 1
Query: 46 TKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGRAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCRDLSNPDVFETTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNLMHDNFQYGFDPHDDSDYLTIANNKVYNNHNHGIIASKRCNNXXXXXXEVYDGGPDAVGIFLHRSSDNAEVYG 792
T WLL ELYV DG G+DEGGD DELR+ ST + + +R HGGS+ F T V SWDT P E GRS+++ VSE +T E TC+G AKN GE RMDI NSE+GY+GF D+ESYGLTWKVRGFC+D SNP++F+ NVYG++ +SDIHH+ +G+Y+YGHQ G W N MHDN YGFDPHDDSD+LTI +N+VYNN HGIIASKRCN EVY G + GIFLHRSSD+A V G
Sbjct: 104 TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTS-ETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 353 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13080.2331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13080.2331.1 >prot_E-fasciculatus_F_contig13080.2331.1 ID=prot_E-fasciculatus_F_contig13080.2331.1|Name=mRNA_E-fasciculatus_F_contig13080.2331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp MLDSSGNKLTAPTSVTKRWLLEAELYVTDGAIFYCIGSDEGGDCDELRIQback to top mRNA from alignment at E-fasciculatus_F_contig13080:247..3619- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13080.2331.1 ID=mRNA_E-fasciculatus_F_contig13080.2331.1|Name=mRNA_E-fasciculatus_F_contig13080.2331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3373bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13080:247..3619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13080:247..3619- >mRNA_E-fasciculatus_F_contig13080.2331.1 ID=mRNA_E-fasciculatus_F_contig13080.2331.1|Name=mRNA_E-fasciculatus_F_contig13080.2331.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13080:247..3619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |