mRNA_E-fasciculatus_F_contig13071.2328.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: D8LF61_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF61_ECTSI) HSP 1 Score: 424 bits (1090), Expect = 2.920e-141 Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 1
Query: 10 KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEH 648
KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNI MRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADC+KFVHTFRNQFSVEQLLALMPMLIAHLKSEH
Sbjct: 282 KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNITMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCIKFVHTFRNQFSVEQLLALMPMLIAHLKSEH 494
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A6H5L714_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L714_9PHAE) HSP 1 Score: 258 bits (660), Expect = 3.300e-81 Identity = 126/128 (98.44%), Postives = 126/128 (98.44%), Query Frame = 1
Query: 10 KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAA 393
KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNI MRAADEELFEFNPDDYISGDM GGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAA
Sbjct: 317 KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNITMRAADEELFEFNPDDYISGDMGGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAA 444
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A835YZE8_9STRA (Cse1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE8_9STRA) HSP 1 Score: 259 bits (662), Expect = 4.190e-77 Identity = 126/227 (55.51%), Postives = 165/227 (72.69%), Query Frame = 1
Query: 10 KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHVSESPFSRRVLDSL 690
KV + HD +ATTCI+FLT +V KQ+H LF EATL +I + I +PN+ +R +DEELFE NP DYI DM+G D++TRRR +CDL+R MC+H+E TTRICS + Y+ + WR KDAALQL+LA+SVRA S A GVS+TN Y+NV++ F++ VLPEI PDVN RPIV ADC+KFV TFRNQF+VEQ+ AL+PML+AHL SE + ++ ++ L
Sbjct: 278 KVGPEQRHDALATTCIRFLTSIVSKQMHSALFAEEATLRQITENIVVPNLGLRDSDEELFEDNPSDYIQRDMEGSDSDTRRRVSCDLVRGMCRHHEAATTRICSELAGTLLARYASDPAQQWRCKDAALQLLLAVSVRAASAAHGVSETNQYVNVMEVFSSSVLPEISTPDVNTRPIVHADCIKFVATFRNQFTVEQMRALVPMLMAHLASEAAVVATYAAMAIEKL 504
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A7S3QDC2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDC2_9STRA) HSP 1 Score: 218 bits (554), Expect = 7.990e-62 Identity = 106/224 (47.32%), Postives = 158/224 (70.54%), Query Frame = 1
Query: 13 VSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHVSESPFSRRVLD 684
V+ HDI+ATTCIKFL+ +VGK +HK LF E+TL +II I IPN+K+R ADEE FE +P ++I GDM+G D+E+RR+ + DLL++MC+ +E TT ICS + M E+S+N NW +KDAA+ L+L +S+RA+S G VS N +N+++ F+ ++L E+QD + + RP+V+A +K+ TFRNQF+ E + ALMP+LI+HL S +V +S ++
Sbjct: 316 VTTHSKHDILATTCIKFLSSLVGKPMHKSLFQDESTLKQIITNIVIPNLKIREADEERFEDDPQEFIMGDMEGSDSESRRKRSGDLLKAMCRQFEAQTTSICSEHIAAMLVEFSINPSDNWIAKDAAIHLMLGISIRAESNQG-VSSINDKVNIMEFFSANILTELQDLNHSIRPMVKAAAIKYASTFRNQFTKEHIAALMPLLISHLNSPNVVVHTYSASAVE 538
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: B8LEN1_THAPS (Importin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEN1_THAPS) HSP 1 Score: 210 bits (535), Expect = 3.610e-59 Identity = 103/220 (46.82%), Postives = 153/220 (69.55%), Query Frame = 1
Query: 31 HDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHVSESPFSRRVLDSL 690
HD +AT I+FL+ ++GK +H+ LF E TL EI KI IPN+ +R DEE FE +P ++I DM+ D E+RR+ +LLR+MC+ +E+ TT ICS V+ M +++ ++ + W+ KDAA+ L+L +S+RA+S GVS+ N +NV+D F+TH+L E+Q+ D+N RP+V+A +KFV TFRNQFS EQ ALMP+LIAHL S HV ++ ++ +
Sbjct: 329 HDALATISIRFLSSLIGKLMHRKLFEGEGTLREIFGKIVIPNLMIREIDEERFEDDPQEFILSDMESSDTESRRKCTQELLRAMCRQFEQQTTAICSEHVSQMLGQFAADK-SQWKMKDAAIHLMLGISIRAESAQFGVSQVNEGVNVMDFFSTHILTELQETDMNVRPMVKATSIKFVSTFRNQFSKEQFGALMPLLIAHLGSTHVVLHTYAAAAIEKM 547
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A7S3XPQ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPQ4_HETAK) HSP 1 Score: 209 bits (531), Expect = 1.290e-58 Identity = 105/225 (46.67%), Postives = 150/225 (66.67%), Query Frame = 1
Query: 10 KVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHVSESPFSRRVLD 684
+V+ +D +ATT I+FLT +V KQ+H++LF A +I+++IA+PN+ +R +D ELFE NP DYI DM+G D +TRRR A +L+R +C+ + E T +C + + +Y+ NRE R KDAAL L LA +V AQS G S+ N +NVL+ F+ HVLPE+QDPD NARPIVRADC+KFV FR+Q + L L+P+LIA L+S V ++ ++
Sbjct: 308 RVAQTPRYDPLATTAIRFLTAIVSKQLHRELFQDPAAQRQIVERIAVPNLMLRESDAELFEDNPQDYIQMDMEGSDQDTRRRCAVELVRGLCRTHREAATPLCREYAATLLAQYAQNREE--RLKDAALHLTLAAAVAAQSALHGASEVNPGVNVLEVFSQHVLPELQDPDPNARPIVRADCVKFVLLFRSQLDLNTLQGLLPLLIALLRSSSVVVQTYAANCIE 530
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A7S2UN57_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UN57_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.060e-58 Identity = 103/213 (48.36%), Postives = 150/213 (70.42%), Query Frame = 1
Query: 13 VSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHV 651
V++ HD +ATT IKFL +V K +H+ LF SE TL II KI +PN+ +R DEE FE +P ++I GDM+GGD ++RRR + LLR+MC+ +E TT I V GM E++ + W +KDAA+ L+L +S+RA+S+ GVS N +N+++ F+TH+LPE+Q+P+++ RP+++A LKFV TFRNQF+ E L +LMP+LIAHL + V
Sbjct: 307 VTSQPRHDELATTSIKFLAGLVEKLMHRKLFESEETLRNIILKIVVPNLMVREVDEERFEDDPSEFIMGDMEGGDTDSRRRCSQLLLRAMCRQFEVETTAITGEHVGGMLTEFTKDPANKWGAKDAAIHLMLGISIRAESEGKGVSIVNDKVNIMEFFSTHILPELQEPNMSVRPMLKATALKFVSTFRNQFTKEHLTSLMPLLIAHLSAPSV 519
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A7S0C261_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C261_9STRA) HSP 1 Score: 192 bits (488), Expect = 4.760e-58 Identity = 95/203 (46.80%), Postives = 146/203 (71.92%), Query Frame = 1
Query: 13 VSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPM 621
V++ + HDI+ATT I+FL+ +V KQ+H+ LF EATL +I+ KI IPN+ +R D E FE + D+I GDM+G D E+RR+ + +LLR+MC ++ TT ICS +T M ++S + +WR+KD A+ L+LA++++A+S A GVS TN +NV++ F +H++PE+QD D ++RP+V+A LKFV TFR QFS++ L L+ +
Sbjct: 28 VTSYEKHDILATTSIRFLSSLVAKQMHRSLFQEEATLRQIVAKIIIPNVNVREVDVEKFEDDAPDFILGDMEGSDTESRRKCSQELLRAMCLQFDNETTAICSEHITSMLGQFSKDPVNSWRAKDVAIYLMLAVAIKAES-AMGVSLTNEKINVMEFFASHIVPELQDADHSSRPMVKATALKFVTTFRCQFSIDHLKVLIQL 229
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: A0A4W4EB68_ELEEL (Exportin-2 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4EB68_ELEEL) HSP 1 Score: 199 bits (506), Expect = 4.750e-57 Identity = 91/220 (41.36%), Postives = 149/220 (67.73%), Query Frame = 1
Query: 31 HDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHVSESPFSRRVLDSL 690
+D++ + I+FL V + +K LF + TLT I +K+ +PN++ R+ADEE FE N ++YI D++G D +TRRR ACDL+R +C+ +E P T I S +V M EY+ N ANW+ KD+A+ LV +L+ +AQ+Q G+++ N +N+ + F +H+LP+++ P VN P+++AD +K+V TFR+Q EQLL +P+L+AHL++E + ++ L+ L
Sbjct: 298 YDLLVSNAIQFLASVCERPHYKHLFEDQNTLTSICEKVIVPNMEFRSADEEAFEDNSEEYIIRDLEGSDIDTRRRAACDLVRGLCRFFEGPVTAIFSGYVNSMLTEYAKNPAANWKHKDSAIYLVTSLASKAQTQKHGITQANELVNLTEFFVSHILPDLRSPSVNEFPVLKADAVKYVMTFRSQLPKEQLLETVPLLVAHLRAESTVQHTYTAHALERL 517
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Match: K0R4M3_THAOC (Importin N-terminal domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4M3_THAOC) HSP 1 Score: 203 bits (517), Expect = 1.010e-56 Identity = 98/220 (44.55%), Postives = 150/220 (68.18%), Query Frame = 1
Query: 31 HDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIPNIKMRAADEELFEFNPDDYISGDMDGGDNETRRRGACDLLRSMCKHYEEPTTRICSVFVTGMYQEYSVNREANWRSKDAALQLVLALSVRAQSQAGGVSKTNAYMNVLDAFTTHVLPEIQDPDVNARPIVRADCLKFVHTFRNQFSVEQLLALMPMLIAHLKSEHVSESPFSRRVLDSL 690
HD +AT I+FL+ ++GK +H+ +F EATL EI+ +I IPN+ +R DEE FE +P ++I GDM+G D+E+RR+ ++LR+MC+ +E TT I S V M Q+Y + W+ KD A+ L+L ++VRA+S GVS+ N +NV+D F+ HV E+Q+ +++ RP+V+A C+KFV TFR QFS EQ++ LMP+LIAHL S V ++ ++ +
Sbjct: 315 HDALATISIRFLSSLIGKLMHRSIFQDEATLREILTRIVIPNLTIREVDEEKFEDDPAEFILGDMEGSDSESRRKCTQEMLRAMCRQFEGQTTAIVSEHVGSMLQQYQADPANQWKMKDVAVHLILGVAVRAESAQFGVSQVNDGVNVMDFFSKHVYSELQEANMSVRPMVKATCIKFVTTFRQQFSKEQIVGLMPLLIAHLGSGDVVVHTYAAAAIEKI 534 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13071.2328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13071.2328.1 >prot_E-fasciculatus_F_contig13071.2328.1 ID=prot_E-fasciculatus_F_contig13071.2328.1|Name=mRNA_E-fasciculatus_F_contig13071.2328.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=230bp VVSKVSAGKHHDIVATTCIKFLTLVVGKQIHKDLFGSEATLTEIIQKIAIback to top mRNA from alignment at E-fasciculatus_F_contig13071:555..3414+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13071.2328.1 ID=mRNA_E-fasciculatus_F_contig13071.2328.1|Name=mRNA_E-fasciculatus_F_contig13071.2328.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2860bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13071:555..3414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13071:555..3414+ >mRNA_E-fasciculatus_F_contig13071.2328.1 ID=mRNA_E-fasciculatus_F_contig13071.2328.1|Name=mRNA_E-fasciculatus_F_contig13071.2328.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1380bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13071:555..3414+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |