mRNA_E-fasciculatus_F_contig13068.2324.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13068.2324.1
Unique NamemRNA_E-fasciculatus_F_contig13068.2324.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13068.2324.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 2.830e-91
Identity = 152/161 (94.41%), Postives = 155/161 (96.27%), Query Frame = 1 
Query:    1 DEAHEGQGSAEEEGQAALELERRLHAPPAIQFVTESRRGGFNKGSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLFLQLGRHEVMGSSLIMHKEPETPGGTHSSKRLGGVGSQASGGCVTGEQQTEEATRNR 483
            DEAHEGQ SAEEEGQAALELERRLHAPPAIQFVTE+RRGGFNKGSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVL LQ+GRHEVMGSSLIMHKEPETPG THSSKR GGVGSQAS G VTGEQQTE+ATRNR
Sbjct:  326 DEAHEGQDSAEEEGQAALELERRLHAPPAIQFVTETRRGGFNKGSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLLLQMGRHEVMGSSLIMHKEPETPGSTHSSKRSGGVGSQASAGGVTGEQQTEDATRNR 486
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BLAST of mRNA_E-fasciculatus_F_contig13068.2324.1 vs. uniprot
Match: A0A7S2HDC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDC1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.800e-18
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:  139 ITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLFLQLGRHEVMGSSLIM 360
            I YGSTI+LQA HG  LC N+    +ASA+  +P+A  TVWN+++L   G +RYGD ++LQ GR+E++GSS +M
Sbjct:    3 IYYGSTISLQAHHGNFLCMNSSRNCEASAVKNEPHAQFTVWNVKNLSGTGVMRYGDSVWLQCGRYEILGSSFMM 76
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BLAST of mRNA_E-fasciculatus_F_contig13068.2324.1 vs. uniprot
Match: F0YI78_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI78_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 1.720e-14
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   31 EEEGQAALELERRLHAPPAIQFVTESRRGGFNKGSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLFLQLGRHEVMGSSLIMH 363
            E + + AL + + L +    Q   ++      KG+ + YGS I LQA HGG +  N  G+  A A+   P  LLT+WN+ DL   G +RYGD ++LQ  R+E++G+S + H
Sbjct:  139 EAKNEMALAISKHLVSATIPQNSPQTPPLNHPKGAVVYYGSAIALQANHGGYMGLNQHGRVDAVAIRPTPPCLLTLWNMMDLGDVGAIRYGDQVWLQCSRYELLGTSAMPH 249
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13068.2324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPS8_ECTSI2.830e-9194.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2HDC1_9STRA6.800e-1851.35Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YI78_AURAN1.720e-1436.94Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13068contigE-fasciculatus_F_contig13068:450..3102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue1.5e-79
Seed eggNOG ortholog2880.D8LPS8
EggNOG OGs2CIRK@1,2SVXF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size550
Cds size549
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13068.2324.1prot_E-fasciculatus_F_contig13068.2324.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13068 451..3102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927811.4723096-CDS-E-fasciculatus_F_contig13068:450..5311622927811.4723096-CDS-E-fasciculatus_F_contig13068:450..531Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 451..531 -
1695995704.7189507-CDS-E-fasciculatus_F_contig13068:450..5311695995704.7189507-CDS-E-fasciculatus_F_contig13068:450..531Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 451..531 -
1622927811.4869814-CDS-E-fasciculatus_F_contig13068:1300..14321622927811.4869814-CDS-E-fasciculatus_F_contig13068:1300..1432Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 1301..1432 -
1695995704.7330966-CDS-E-fasciculatus_F_contig13068:1300..14321695995704.7330966-CDS-E-fasciculatus_F_contig13068:1300..1432Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 1301..1432 -
1622927811.5016258-CDS-E-fasciculatus_F_contig13068:1820..19521622927811.5016258-CDS-E-fasciculatus_F_contig13068:1820..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 1821..1952 -
1695995704.7418725-CDS-E-fasciculatus_F_contig13068:1820..19521695995704.7418725-CDS-E-fasciculatus_F_contig13068:1820..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 1821..1952 -
1622927811.5161312-CDS-E-fasciculatus_F_contig13068:2360..24351622927811.5161312-CDS-E-fasciculatus_F_contig13068:2360..2435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 2361..2435 -
1695995704.749996-CDS-E-fasciculatus_F_contig13068:2360..24351695995704.749996-CDS-E-fasciculatus_F_contig13068:2360..2435Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 2361..2435 -
1622927811.529781-CDS-E-fasciculatus_F_contig13068:2973..31021622927811.529781-CDS-E-fasciculatus_F_contig13068:2973..3102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 2974..3102 -
1695995704.7605631-CDS-E-fasciculatus_F_contig13068:2973..31021695995704.7605631-CDS-E-fasciculatus_F_contig13068:2973..3102Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13068 2974..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13068.2324.1

>prot_E-fasciculatus_F_contig13068.2324.1 ID=prot_E-fasciculatus_F_contig13068.2324.1|Name=mRNA_E-fasciculatus_F_contig13068.2324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=183bp
DEAHEGQGSAEEEGQAALELERRLHAPPAIQFVTESRRGGFNKGSTITYG
STITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRY
GDVLFLQLGRHEVMGSSLIMHKEPETPGGTHSSKRLGGVGSQASGGCVTG
EQQTEEATRNRTSAGSRAGPSKSSSGGGGGSTG
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mRNA from alignment at E-fasciculatus_F_contig13068:450..3102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13068.2324.1 ID=mRNA_E-fasciculatus_F_contig13068.2324.1|Name=mRNA_E-fasciculatus_F_contig13068.2324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2653bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13068:450..3102- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGGCCCACGAGGGGCAGGGCAGCGCGGAGGAGGAAGGACAAGCGGC
ACTGGAGCTGGAGCGTCGCCTCCATGCCCCTCCGGCTATCCAATTTGTCA
CCGAGAGCCGCCGAGGAGGCTTCAACAAGGCGAGATGCAGCAACAACACC
CGTGCACGGTGATATAAACACATCTGCGTGCGTAGATGTTTGCCGACGCT
TCGAGGTAGAGGCCAGCTCATTTGACGAGTTGTTTTACTGCAAGGTTTAC
TGACGGGAGATGGACCTGACCATGCCATTTTCAGGGCAAAGTCTGGCGCA
AGTCGTACACGGTGACGGGTAAGAAGGGGGCGGAGGGGAGGTGAAACAGT
ATTTTCTCGGGGCCTGCTGCTTAGGTCGTGAGGGACAGGAACTACATCGC
TTGAGGAAGGCGAAGGCGGAGGGTGCATTGTATCTTCAGCGAGGCGGGGG
TTTTATTGTCGCGGACTGGTGCGGTATCCGCATGCGCGTACATATAGTCG
ACAGCTCTTGTGCCGGGAAAGGTTGAAAGATTCGTGCCGTTTGGCGACTC
GTACGTGAGAAGAACGCATCCATCTAAAGATAAAAGAGAAATGCATACCC
TATGTCCATTCCGGGCCTTAACCTTACAGCCTTGAACCCTCCACACACAC
ACATCCACCGTCCACAGGGCTCGACCATCACGTACGGCTCAACGATAACT
CTCCAGGCGTTCCACGGGGGCATTCTTTGCTTCAACAACAAGGTACATGT
ACTCCTCACCAAGTTCGCACTGTACAGTACTGTGCTTCCAATGACGATGG
CGGCAGGTTCTGGCGCAAGTTGCCGTCCCCAGGCGTATGCCATGGAGAGC
AGAGCACGAACTTCCTGTCTCAACTTTTCCGCTGTGGACGTCTGCTCTGT
GGTCCGAAAGACATCCAGGCGCCATGCGGTTCAAGCTAGTTAGTCGTACG
TTGAATATGACCCACGCTTGTTTTTCCCACGGCCACGTTTAATTTTACCT
CCAGGAGTTCTACCCGGAAACAAATTTGATTGGCTAGTCTGTTACTTCTC
CAATCCCGCCGGATTCCTTGCCGCGTCTCCTTGCAGCTTCCAACTCTACA
GCAAACGCCAGTTAACCGTGCCAATCTCTATTGTTGTACGTTTTCGGCAG
GGAAAGGCCCAAGCGTCGGCCTTGGGGGCGCAGCCGAACGCCCTGTTGAC
CGTGTGGAACTTGCAGGATCTTCAGAGCAAAGGCCCAGTGAGATATGGCG
ACGTGCTGTTCCTCCAATTGGGACGACACGAGGTAAGGGTGAAAGGGGCG
GTGTTCACTGTCTTTTTCTCGCACCTGTTGTTGCTTTCTACTCTCCTCTC
GCTTGCCTCTAGCCTCGAAATGGAAAGCAATCTAGTGTTGCATCTGTTCG
TAGCCAGGTATATCCTGCACGAGAAAACGAGTTTCTCCGTGGGTGGTAGG
GGTAGACGGGGGCTGTGAGACTACCTTGTGCGATTCACACGCCCGAGACA
TGCTGCACGGAACCACTCCAGACATACACACTTGATTGGAATAGCCAATG
CTCTTCGCTGTGCGAGCTGTTGGCGACATACGTTTCGAGTCAGACTGGAT
ACACGGCAATAAACCTCGAACCCCCCCCCCGTTTGACCTGTTGGCACTCG
TGGGCCTTTCGACACTGAAGGTGATGGGGTCCTCCCTCATCATGCACAAA
GAGCCAGAGACGCCGGGGGGCACGCACAGCTCCAAACGGTTGGGAGGGGT
TGGATCACAAGCGTCGGGAGGGTGTGTGACCGGAGAGCAACAAACGGAAG
AGGTGGGAACACAAATTAGGCCTACCTGGGACCTNNNNNNNNNNGGGGGG
GGGGGGGGGGGGGGGGTGATTGTCTTTGTGTGAAGGCTTGGTTTTCTGCA
TAACAGTAAGGCTGTGGAAGAAAATCATGTCATCATGTGGCGTGGAGCAC
GAGGGGTATAGTATAGTAAGAGCGGGAGGGGGGGAGAGCATACGAGGGAG
TGAGTCTCTCGGCCGGCACCACTCGCCGCACACGGCCAGATAAATGCCAA
TCCGTAGCAGCGTGTACGACCGTGTAGATGTTCCGTTTATATATGACTGC
AGAGGTTGAATCCCCCGCGTGGACTATTCGGCTTCTAAACAAACGGTTCG
TGTTTCACTTCTGGTGTGTATTGTAGACTTGCAGAATTCGAAAAATGCAT
CTCCCCTCGTTTGGAACCAATTACCATGTGAAGCACCCTCTACCCTGGTT
CGCTCTTGGGCCTGAACTCACCACCATCGCCCAGGCTGGTCTTAGGTCTA
CTTGGTCCCCCCCCCGTCCCCCGTATTCTCCTCGTCGACCCCTTCAGAGT
CCCCAACAAATAAAGTCACACGACTCCCTAATTCGATTTTTGATCAAGCA
CACCTGTTTCAATTGTTTGTTTGATTGAGATAAATCCCGCCGACACCTTC
ACACACCCACACACACACACACCCGAACTCACAACGATTTATTTTTCTTG
TTTTTCTGATGGTTCGTCGGCGGGGATCTGTTATTTCCTGACGGTCCTTG
GATTCGGGTGTAAAAATCCAGGCGACACGGAATCGGACATCCGCGGGGTC
GAGAGCGGGCCCTTCGAAATCTTCGTCGGGTGGCGGCGGGGGCTCCACGG
GTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13068:450..3102-

>mRNA_E-fasciculatus_F_contig13068.2324.1 ID=mRNA_E-fasciculatus_F_contig13068.2324.1|Name=mRNA_E-fasciculatus_F_contig13068.2324.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13068:450..3102- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGAGGCCCACGAGGGGCAGGGCAGCGCGGAGGAGGAAGGACAAGCGGC
ACTGGAGCTGGAGCGTCGCCTCCATGCCCCTCCGGCTATCCAATTTGTCA
CCGAGAGCCGCCGAGGAGGCTTCAACAAGGACGAGGCCCACGAGGGGCAG
GGCAGCGCGGAGGAGGAAGGACAAGCGGCACTGGAGCTGGAGCGTCGCCT
CCATGCCCCTCCGGCTATCCAATTTGTCACCGAGAGCCGCCGAGGAGGCT
TCAACAAGGGCTCGACCATCACGTACGGCTCAACGATAACTCTCCAGGCG
TTCCACGGGGGCATTCTTTGCTTCAACAACAAGGGCTCGACCATCACGTA
CGGCTCAACGATAACTCTCCAGGCGTTCCACGGGGGCATTCTTTGCTTCA
ACAACAAGGGAAAGGCCCAAGCGTCGGCCTTGGGGGCGCAGCCGAACGCC
CTGTTGACCGTGTGGAACTTGCAGGATCTTCAGAGCAAAGGCCCAGTGAG
ATATGGCGACGTGCTGTTCCTCCAATTGGGACGACACGAGGGAAAGGCCC
AAGCGTCGGCCTTGGGGGCGCAGCCGAACGCCCTGTTGACCGTGTGGAAC
TTGCAGGATCTTCAGAGCAAAGGCCCAGTGAGATATGGCGACGTGCTGTT
CCTCCAATTGGGACGACACGAGGTGATGGGGTCCTCCCTCATCATGCACA
AAGAGCCAGAGACGCCGGGGGGCACGCACAGCTCCAAACGGTTGGGAGGG
GTTGGATCACAAGCGTCGGGAGGGTGTGTGACCGGAGAGCAACAAACGGA
AGAGGTGATGGGGTCCTCCCTCATCATGCACAAAGAGCCAGAGACGCCGG
GGGGCACGCACAGCTCCAAACGGTTGGGAGGGGTTGGATCACAAGCGTCG
GGAGGGTGTGTGACCGGAGAGCAACAAACGGAAGAGGCGACACGGAATCG
GACATCCGCGGGGTCGAGAGCGGGCCCTTCGAAATCTTCGTCGGGTGGCG
GCGGGGGCTCCACGGGTGCGACACGGAATCGGACATCCGCGGGGTCGAGA
GCGGGCCCTTCGAAATCTTCGTCGGGTGGCGGCGGGGGCTCCACGGGT
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