mRNA_E-fasciculatus_F_contig13059.2320.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13059.2320.1
Unique NamemRNA_E-fasciculatus_F_contig13059.2320.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13059.2320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13059contigE-fasciculatus_F_contig13059:2857..3775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size365
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13059.2320.1prot_E-fasciculatus_F_contig13059.2320.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13059 2857..3769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927811.0329378-CDS-E-fasciculatus_F_contig13059:2856..30701622927811.0329378-CDS-E-fasciculatus_F_contig13059:2856..3070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 2857..3070 -
1695995704.535331-CDS-E-fasciculatus_F_contig13059:2856..30701695995704.535331-CDS-E-fasciculatus_F_contig13059:2856..3070Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 2857..3070 -
1622927811.0443664-CDS-E-fasciculatus_F_contig13059:3626..37691622927811.0443664-CDS-E-fasciculatus_F_contig13059:3626..3769Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 3627..3769 -
1695995704.543921-CDS-E-fasciculatus_F_contig13059:3626..37691695995704.543921-CDS-E-fasciculatus_F_contig13059:3626..3769Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 3627..3769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927811.0535872-UTR-E-fasciculatus_F_contig13059:3769..37751622927811.0535872-UTR-E-fasciculatus_F_contig13059:3769..3775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13059 3770..3775 -
1695995704.5531726-UTR-E-fasciculatus_F_contig13059:3769..37751695995704.5531726-UTR-E-fasciculatus_F_contig13059:3769..3775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13059 3770..3775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13059.2320.1

>prot_E-fasciculatus_F_contig13059.2320.1 ID=prot_E-fasciculatus_F_contig13059.2320.1|Name=mRNA_E-fasciculatus_F_contig13059.2320.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=119bp
MAAATALPGVTTTTTTTTTTLLDGPDLQCRTAARSFPLAAGCCVRPLRNI
LSWAAAAAAAAAGSRESAGAGQPRARWRARRHPHSRATTGTWGGLRLGSV
LLDTPWSFSLQQRGGVGGG
back to top

mRNA from alignment at E-fasciculatus_F_contig13059:2857..3775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13059.2320.1 ID=mRNA_E-fasciculatus_F_contig13059.2320.1|Name=mRNA_E-fasciculatus_F_contig13059.2320.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=919bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13059:2857..3775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGGGATGGCGGCAGCGACGGCCCTGCCTGGTGTTACCACGACGACGAC
AACGACAACAACGACTCTCCTGGATGGCCCAGATCTGCAGTGCCGTACAG
CAGCCCGGTCGTTTCCACTGGCGGCGGGGTGCTGCGTCCGACCCCTCAGG
TGGGATTGGGTTGAGCGGGGGCTTGTGTTGTATGTCTTCTTTTGAGGAGA
TCGGACGATAATAGGGTACAGCCTCCACGTGATGACGGGTGTACATGCGA
ATGGAGGTACAGTATGTATTCAAGGTCGGGAGAAGAGAGAACGGTCAGGG
CCGACGCCTACCTTCATTTTTCATGACGAAAGTAGATCCGTCTGTACAGC
CCAATTAACTGTGTTGTAGGATTTTAAATTAATGAAAGCATTGGATTTTG
GATGAGGCCTCCAGCTCCGGCCTGTAGTGCCACCCATATTTTCCTAGCCG
TGTCTTCTGTTCATGTGTGTGTGTATTTTATTGATGTGCTTGTTCCACAC
AACTAGCGTCTACACGTGGACAGACCGTGTTCGCCTATCCCCTCCGTCCT
CCCCGGTCCCCACTTCAGCATCTGCCCTACACTGGCGTGGGTACCCCCCA
CCCTCTCCTGTACGCACTGCCTGTCAAACAGCTGGATTTCTTGGACCGTT
TCGCCACACCGTTGACTCAAGCTATGAACACGCCGACTGATCGACCGCAA
ACCAGGAACATTTTGTCGTGGGCGGCAGCAGCAGCAGCGGCAGCAGCGGG
GTCACGAGAATCCGCGGGCGCAGGTCAACCTCGAGCGCGATGGCGGGCAC
GACGTCATCCTCACAGCAGGGCGACGACGGGAACATGGGGAGGGCTCCGG
CTCGGGTCCGTCCTCCTCGACACCCCCTGGTCCTTTTCTCTGCAGCAGAG
GGGCGGTGTTGGTGGTGGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13059:2857..3775-

>mRNA_E-fasciculatus_F_contig13059.2320.1 ID=mRNA_E-fasciculatus_F_contig13059.2320.1|Name=mRNA_E-fasciculatus_F_contig13059.2320.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13059:2857..3775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCAGCGACGGCCCTGCCTGGTGTTACCACGACGACGACAACGAC
AACAACGACTCTCCTGGATGGCCCAGATCTGCAGTGCCGTACAGCAGCCC
GGTCGTTTCCACTGGCGGCGGGGTGCTGCGTCCGACCCCTCAGATGGCGG
CAGCGACGGCCCTGCCTGGTGTTACCACGACGACGACAACGACAACAACG
ACTCTCCTGGATGGCCCAGATCTGCAGTGCCGTACAGCAGCCCGGTCGTT
TCCACTGGCGGCGGGGTGCTGCGTCCGACCCCTCAGGAACATTTTGTCGT
GGGCGGCAGCAGCAGCAGCGGCAGCAGCGGGGTCACGAGAATCCGCGGGC
GCAGGTCAACCTCGAGCGCGATGGCGGGCACGACGTCATCCTCACAGCAG
GGCGACGACGGGAACATGGGGAGGGCTCCGGCTCGGGTCCGTCCTCCTCG
ACACCCCCTGGTCCTTTTCTCTGCAGCAGAGGGGCGGTGTTGGTGGTGGT
GAACATTTTGTCGTGGGCGGCAGCAGCAGCAGCGGCAGCAGCGGGGTCAC
GAGAATCCGCGGGCGCAGGTCAACCTCGAGCGCGATGGCGGGCACGACGT
CATCCTCACAGCAGGGCGACGACGGGAACATGGGGAGGGCTCCGGCTCGG
GTCCGTCCTCCTCGACACCCCCTGGTCCTTTTCTCTGCAGCAGAGGGGCG
GTGTTGGTGGTGGT
back to top