mRNA_E-fasciculatus_F_contig13059.2319.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13059.2319.1
Unique NamemRNA_E-fasciculatus_F_contig13059.2319.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13059.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13059contigE-fasciculatus_F_contig13059:1911..2829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.9889853-CDS-E-fasciculatus_F_contig13059:1910..19951622927810.9889853-CDS-E-fasciculatus_F_contig13059:1910..1995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 1911..1995 -
1695995704.515479-CDS-E-fasciculatus_F_contig13059:1910..19951695995704.515479-CDS-E-fasciculatus_F_contig13059:1910..1995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 1911..1995 -
1622927811.0019283-CDS-E-fasciculatus_F_contig13059:2722..28291622927811.0019283-CDS-E-fasciculatus_F_contig13059:2722..2829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 2723..2829 -
1695995704.526264-CDS-E-fasciculatus_F_contig13059:2722..28291695995704.526264-CDS-E-fasciculatus_F_contig13059:2722..2829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13059 2723..2829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13059.2319.1prot_E-fasciculatus_F_contig13059.2319.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13059 1911..2829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13059.2319.1

>prot_E-fasciculatus_F_contig13059.2319.1 ID=prot_E-fasciculatus_F_contig13059.2319.1|Name=mRNA_E-fasciculatus_F_contig13059.2319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
MGESSSSSSGDENLTTQDPYVRASLKRAIVCFCPSRRFSLPSQSAVPLFR
EGDLLVKETIAPVD
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mRNA from alignment at E-fasciculatus_F_contig13059:1911..2829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13059.2319.1 ID=mRNA_E-fasciculatus_F_contig13059.2319.1|Name=mRNA_E-fasciculatus_F_contig13059.2319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=919bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13059:1911..2829- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGAGAGCAGCAGCAGCAGCAGCGGCGACGAAAACTTGACCACCCA
AGACCCGTACGTGCGGGCCTCCCTCAAGAGAGCCATCGTCTGCTTCTGTC
CTTCAAGGTGGGCGAAATAAGGGGGTTTGTTGTTGCTTCTTGCTTGTCTA
GTTGCCGCACAATCGACAGAGCGTTGCGCTGGCTGTATGAGGCTCCAAAC
AGTGAGAGACCCGCCTAAAATGCCTGGGGCGCTGTTTTTTCCCCGCATGG
GGGGGGGGTAGTGTTGGAACACCCCTGCCGTACAGCACGTTCTTCAAGTT
TGTTCCGTGAGTGCGTTTTCGCTTCCGCTACTGTAGACGGTTTTTGGTTC
GGCGTACGGCCGGTGATGCCTTTTGTATCGCATTCTGAAGACAAATGCTG
AAATCAACACGTGCGGATATGGGTTCAAGTATAGCCATACTGTGTCCTAT
AGGCCATAGTGTCCTGTTCGAACACCAATCTGATACCGGGGTGTGGGGTT
AAGTATACGCCATACTAAATCCAATACAGAAAAAACTGCGAGTATATGTT
TCAAGTTCTACCACACAACATCCTCTACAAAATACCCCCCCCCCCCCCCC
CCCCCCCCCCGCCTAGCCTAGCCTAGCCCCTTCAGGGCGTCCAGCTCTCT
CCGGAGAAGCAGGCGCTTCGACTTCGGTTTCCGCCTCGGTGCTCCCGGTA
CGTCCACCACACATGCACCTGTTTTTGGTTCGGTGCAACAGCGTCACCTG
CGGCGGCCTCCGGCTAACCGTTGAAACGAGATGCCGGTATTTCGTGCTCA
CGATGTTTTTTTTCGGCGTTTGCTTGCCCGAAAGACGTTTCAGTTTACCG
AGCCAGTCTGCCGTTCCCCTGTTCCGTGAGGGAGATCTGCTTGTCAAGGA
AACAATCGCGCCAGTAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13059:1911..2829-

>mRNA_E-fasciculatus_F_contig13059.2319.1 ID=mRNA_E-fasciculatus_F_contig13059.2319.1|Name=mRNA_E-fasciculatus_F_contig13059.2319.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13059:1911..2829- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCGAGAGCAGCAGCAGCAGCAGCGGCGACGAAAACTTGACCACCCA
AGACCCGTACGTGCGGGCCTCCCTCAAGAGAGCCATCGTCTGCTTCTGTC
CTTCAAGATGGGCGAGAGCAGCAGCAGCAGCAGCGGCGACGAAAACTTGA
CCACCCAAGACCCGTACGTGCGGGCCTCCCTCAAGAGAGCCATCGTCTGC
TTCTGTCCTTCAAGACGTTTCAGTTTACCGAGCCAGTCTGCCGTTCCCCT
GTTCCGTGAGGGAGATCTGCTTGTCAAGGAAACAATCGCGCCAGTAGACA
CGTTTCAGTTTACCGAGCCAGTCTGCCGTTCCCCTGTTCCGTGAGGGAGA
TCTGCTTGTCAAGGAAACAATCGCGCCAGTAGAC
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