mRNA_E-fasciculatus_F_contig13058.2318.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13058.2318.1
Unique NamemRNA_E-fasciculatus_F_contig13058.2318.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: D8LGR2_ECTSI (Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR2_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 3.730e-111
Identity = 182/221 (82.35%), Postives = 190/221 (85.97%), Query Frame = 1
Query:   10 AGKVPGVVYSNSDNRGDSARSGGRGIGRPADDPILVKVDKIVLDREIRRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVADPGAGGNRD-QXXXXXXXXXXXXXXXXXXXXQKPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRR-RTHQHILLPEDPEMVPKWLYLDLEFVRSGSK--VSQLPCPESLPRH 660
            AGKVPGVVYSNSDNRG S+R GG G+GRPADDPILVKVDKIVLDRE+RRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTV DPGAGG+R  +              XXXXXX  PERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFIN+DLNENFRKGAYIRR +THQHILLPEDPEMVPKWLYLDLEFVRSGSK  VS L  PE +  H
Sbjct:   34 AGKVPGVVYSNSDNRGHSSRPGG-GVGRPADDPILVKVDKIVLDREVRRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVTDPGAGGDRGKEEEEGVSAGEGGVEGXXXXXXXXPERRELVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINSDLNENFRKGAYIRRLKTHQHILLPEDPEMVPKWLYLDLEFVRSGSKLRVSDLMMPEGILLH 253          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A397C844_9STRA (Ribosomal_TL5_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C844_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-6
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  373 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSKV 624
            VL   + LHPV     SVN++RYK GRK  IP+ F+N + +   ++G YI    H+ I      E++P  LY+D+  +  G ++
Sbjct:  104 VLLRDATLHPVTDIPQSVNFLRYKPGRKVHIPLDFLNQEGSPGLKRGGYINNVYHE-IPCTIASEVIPAKLYVDVNGMHVGERI 186          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A3R6YZB1_9STRA (Ribosomal_TL5_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZB1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.010e-6
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  373 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSKV 624
            VL   + LHPV     SVN++RYK GRK  IP+ F+N + +   ++G YI    H+ I      E +P  L++D+  +  G ++
Sbjct:  103 VLLRDATLHPVTDVPQSVNFLRYKPGRKVHIPLDFLNQESSPGLKRGGYINNVYHE-IPCTIASEAIPTKLFVDVNGMHVGQRI 185          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: F0WKB2_9STRA (50S ribosomal protein L25 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WKB2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.530e-5
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  370 LVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSK 621
            L +    + HPV    L+VN+IRYK GRK  IPI +IN + +   ++G YI    H+ +    + E VPK L +D+  +   SK
Sbjct:  113 LAIMRDVQFHPVTDIPLTVNFIRYKNGRKVSIPITYINEEGSPGIKRGGYINHIYHE-VECYINTEQVPKTLEIDVNGLDVDSK 195          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A485LRJ8_9STRA (Aste57867_24188 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRJ8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.520e-5
Identity = 28/84 (33.33%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  373 VLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSKV 624
            VL     LHPV    L+VN++RYK GRK  IP+ ++N + +   ++G YI    H  I      E +P  L++D+  +  G ++
Sbjct:  105 VLLRDVTLHPVTDVPLTVNFLRYKPGRKVHIPLDYLNTEGSPGLKRGGYINNVRHD-IPCTIASEEIPAKLFVDVNGMHVGERI 187          
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Match: A0A024G2B8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2B8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.130e-5
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 1
Query:  370 LVLANQSRLHPVFRTLLSVNWIRYKAGRKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLEFVRSGSK 621
            L +    + HPV    L+VN+IRYK GRK  IPI +IN + +   ++G YI    H+ +    + + VPK L +D+  +   SK
Sbjct:  825 LAIMRDVQFHPVTDLPLTVNFIRYKHGRKVSIPITYINEEGSPGLKRGGYINHICHE-VECYVNTDQVPKTLEIDVNGLDVDSK 907          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13058.2318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LGR2_ECTSI3.730e-11182.35Ribosomal protein L25, Ctc-form n=2 Tax=Ectocarpus... [more]
A0A397C844_9STRA1.570e-635.71Ribosomal_TL5_C domain-containing protein n=4 Tax=... [more]
A0A3R6YZB1_9STRA4.010e-634.52Ribosomal_TL5_C domain-containing protein n=2 Tax=... [more]
F0WKB2_9STRA1.530e-536.9050S ribosomal protein L25 putative n=1 Tax=Albugo ... [more]
A0A485LRJ8_9STRA3.520e-533.33Aste57867_24188 protein n=1 Tax=Aphanomyces stella... [more]
A0A024G2B8_9STRA4.130e-535.71Cleavage and polyadenylation specificity factor su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13058contigE-fasciculatus_F_contig13058:336..3586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog description50S ribosomal protein L25
Ec32 orthologEc-07_005340.1
Hectar predicted targeting categoryother localisation
Exons4
Model size660
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13058.2318.1prot_E-fasciculatus_F_contig13058.2318.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13058 336..3586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.9250102-CDS-E-fasciculatus_F_contig13058:335..4641622927810.9250102-CDS-E-fasciculatus_F_contig13058:335..464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 336..464 -
1695995704.4687238-CDS-E-fasciculatus_F_contig13058:335..4641695995704.4687238-CDS-E-fasciculatus_F_contig13058:335..464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 336..464 -
1622927810.9358857-CDS-E-fasciculatus_F_contig13058:822..9501622927810.9358857-CDS-E-fasciculatus_F_contig13058:822..950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 823..950 -
1695995704.4826708-CDS-E-fasciculatus_F_contig13058:822..9501695995704.4826708-CDS-E-fasciculatus_F_contig13058:822..950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 823..950 -
1622927810.9469817-CDS-E-fasciculatus_F_contig13058:2402..26251622927810.9469817-CDS-E-fasciculatus_F_contig13058:2402..2625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 2403..2625 -
1695995704.493994-CDS-E-fasciculatus_F_contig13058:2402..26251695995704.493994-CDS-E-fasciculatus_F_contig13058:2402..2625Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 2403..2625 -
1622927810.9587333-CDS-E-fasciculatus_F_contig13058:3406..35861622927810.9587333-CDS-E-fasciculatus_F_contig13058:3406..3586Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 3407..3586 -
1695995704.5028791-CDS-E-fasciculatus_F_contig13058:3406..35861695995704.5028791-CDS-E-fasciculatus_F_contig13058:3406..3586Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13058 3407..3586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13058.2318.1

>prot_E-fasciculatus_F_contig13058.2318.1 ID=prot_E-fasciculatus_F_contig13058.2318.1|Name=mRNA_E-fasciculatus_F_contig13058.2318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
LSAAGKVPGVVYSNSDNRGDSARSGGRGIGRPADDPILVKVDKIVLDREI
RRLNASFDNTVYDLVIEGETSSGDDAADDGIEVTVADPGAGGNRDQEEEE
GASAGEGGVKGGVQQQQKPERRELVLANQSRLHPVFRTLLSVNWIRYKAG
RKYPIPIKFINNDLNENFRKGAYIRRRTHQHILLPEDPEMVPKWLYLDLE
FVRSGSKVSQLPCPESLPRH
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mRNA from alignment at E-fasciculatus_F_contig13058:336..3586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13058.2318.1 ID=mRNA_E-fasciculatus_F_contig13058.2318.1|Name=mRNA_E-fasciculatus_F_contig13058.2318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3251bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13058:336..3586- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTCCGCAGCCGGAAAGGTTCCGGGGGTGGTGTACTCGAACAGCGATAA CAGGGGCGACAGCGCCAGGTCTGGGGGTCGCGGCATCGGACGGCCGGCGG ATGACCCTATCCTGGTGAAGGTGGACAAGATCGTGCTCGATCGGGAGATT CGACGGCTGAACGCTTCCTTCGACAATACGGTACGATATGCGAAAACGAG GTTACGCTTGGTGCGTCTGTCCCATGCACACGTTGGAACTGCTGTGCCTG GCACGCTGGACTCCGCTGTAGGCAAGCAAGCCTGCCCACCTTGTTCAAGG GACGATCTTACCGCAAGCGAAGCACAATCCAAAAACGCCCCGCCCTGTCG TGTCCTGTACCAGGCGCCCCACCCGTTCTCTTGTCCTGTGTCGCACCCAA ACAGCAGTAGTGCTGTCTTTTGTCGTCGTGGCTGTTTAGCCGAGTTGTGT CGTCTCACTGAGCGGAAGCGGCGGTGCTTCTCCGTCTTTCTCTCGAATGA GACGAGAGTTGTTCCATCGTCAAATACCTTAAAAGTGCGTGTAGTGTGAT GGCACCCCCGTGTTAGGGTTTTTCTACAATATAGCGTATTTCTCCACAAC TAGGAGGGTTCGAACACCAACTGATACCTCTCCGGAAAGCCCTCGACGAG ACGTTTCCAAAACTATTGTACCCTTTTCGACAGTGATGCCCCCCTGGTTG TGGAGAAATACGCTTAAAGAAAAACGATCGCACCCCGGTGCGATCACTTT TGCGGCAACTCTCGAAAGGAGGAAAAGACCCGATAACTATCGACACCGCC GTCCGCCCCCCCCTCCCCCCCCCTTCGTGTTGCCACGGGGCGGTGAGGGC AAGGTCCAGAAATCAAGTCTGCCGCTGTGGCAGCAAGTGATTGACCCACA GCACATCCGCCCCAAAAGTTCTCCAAAGTGACCCGTCCCAACCCCCCTCG GTCTATTGCAGGTGTATGATTTGGTTATCGAGGGGGAGACATCGTCTGGG GACGATGCCGCCGATGACGGGATAGAAGTGACTGTAGCAGACCCGGGGGC GGGGGGGAATCGGGACCAGGAGGAAGAGGAGGGGGCATCGGCAGGAGAGG GAGGGGTAAAGGGGGGCGTACAGCAGCAGCAGAAGCCCGAGCGCCGCGAG CTCGTCCTCGCGAACCAAAGTCGCCTACACCCCGGTGAGTCGAGGGTAGG GTTGGTCTTGTCTCGTGGGAGCTGCGTCTATGGTTGTTGAAGCCACCACT GCCTGCGATTTTTCGCGCGTTTCTTTTCGTGAATCCTCCGCACCACTCAC GCCCGTCGGTTCTTCTCTACACTTGGAGGAAAACGATGTACGACAGGTTT TTGTCTTTGGTCCAACCTCCCGCCTGCTGCTATGCGCCCGCTGCCGTCAC GGCAGTGTATGCCCTTCTGTTTTTTACTTGTGTTTTCCGTCCGGGCGAAG GTCGTATCGGTATGCTTGTCGTTATTTTTCGATGATTGTGCGCCAAAGAC GCATTTTATTAGTCTCGTAAGCACCGAAGTACTGTAGCATTGGTGCGGTT GTAGGGGCGGTTACTCTAATTGTGGGAGACGCACCTCGTTATTTCCTGTC TCCCCTAGGCCTGCATCCTATGGAGTGGCTACAGCGATTCCTCGTGTAGG ACACGAAGCTCGGTGTTTTCTACCGAGCAGCTTTACTCCGAATACCACCA GTAAAAAGCAACGTATTTAAGTGGCAAGCTTTTGAAGTTATTCGAAGAGA GATTTGAATACAGTCGAACCTCGCTTAAGTTAACGAAAATTAAGTTAACT CCCCCGGTAAAGTTAACAATTTTTGTCGAAAACATGGTGCCCCGCAGAAA GTATTACATAGAGGTCCCCTTGAATTTTATGTTAACTTCCCCGCCTTAAG TTAACTTTTTTTCGGGAAAAACCATGTGTTAACTTAAGCGAGGTTCGACT GTACTACTGATCACATATTTCGATCGAAAGTACCTGCGCTTTACAACCCG TCTAGAAATGGAAGTCCGTGAGGCGCAGGCTTTCCTAGGCTAGATCCCAT TAGATGCTCAGGTATTCAGTGGGTCATTCGACGCTGTTGCCCAGATCAAA TGCGCATGTATTGATCGAAAGGCCCCAAACCTATGCCGATATGGTCGGGG TACTTTGTCCGTGCAGCCACATGCGACCGACGAGAAAAGCAAAGGCGAAA TTCTCGAAAAGTGCGCGCGCCCTCCCGCCAAACGAATGGGAACTGGCCAA TTCTTGACGGCCCGTGGCATCAAACGCCGTGCGTGTCCCGATACTCTGTA CGAACTCAACCAGACACAATCGTTTTATCTCTCCTCGAGAGAGGAGTGGC GTTCTCGACCGGATGGGTACAATAGGTGCGGGAACGGGAGAGGACGAGTC GTAAGTTATGGGCACTGCCGGAGACGTGAGCAGACCCCATTATGCCGGGT GTGTGCCGTCGTGAAAAAAGTGGGATGTACAGCGGCGGATGTTTTGATGA TCTAACACATGCGACACGCAGGATTGAACTGCAGCGTCACCCCCTATCCC CCTCCCCAGCTGACTGTCGTTACTCCATTGCATCGCACCCCTCTTTTTGG ACGTGTTTTTTTTGTCTTTTTTTCCTTGTCGTCAAGTTTTCCGCACCCTC CTGAGCGTGAACTGGATAAGATACAAGGCCGGTCGGAAGTACCCGATCCC CATCAAGTTCATCAACAACGACCTCAACGAGAACTTCCGGAAGGGGGCGT ACATCCGTAGGCGAGTGGCCGCAGCAGCAGGAGCAGCAATGCAACAGCAG AAACTCGCACGGTTGATTCGTATGGGGTCGACATGCCAGCAGATGTTTAC CCCTGAAATTCAGCAGTGCGGTGCCAGCTTCCGTCGTCTTGGGATGGGGA AGACTTTATCCCCCCGATCCCCTACCCCGTGCAGCCCGCCCCCGCCGCCA ATCCAATCAGGAGAAGGAAACACGGCGGTGCTGAGGACAAATGCTCAGTT TTGGAACTATGATTGGTCTGAGGATTTTCCACCCAGGCGGTGCTGAAAAA TGAGCTCTCTCCCTCCCCCATGCCCCCACCACCACGCCGCTGTATTCGGG CCTTGCGCTTCGCAGGATTAAGACCCACCAGCATATACTCCTCCCGGAGG ACCCAGAAATGGTTCCCAAGTGGCTCTACTTGGATCTTGAGTTCGTTCGC TCGGGAAGCAAGGTAAGCCAGCTGCCCTGCCCCGAATCTCTCCCTCGTCA T
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13058:336..3586-

>mRNA_E-fasciculatus_F_contig13058.2318.1 ID=mRNA_E-fasciculatus_F_contig13058.2318.1|Name=mRNA_E-fasciculatus_F_contig13058.2318.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13058:336..3586- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCTCCGCAGCCGGAAAGGTTCCGGGGGTGGTGTACTCGAACAGCGATAA
CAGGGGCGACAGCGCCAGGTCTGGGGGTCGCGGCATCGGACGGCCGGCGG
ATGACCCTATCCTGGTGAAGGTGGACAAGATCGTGCTCGATCGGGAGATT
CGACGGCTGAACGCTTCCTTCGACAATACGCTCTCCGCAGCCGGAAAGGT
TCCGGGGGTGGTGTACTCGAACAGCGATAACAGGGGCGACAGCGCCAGGT
CTGGGGGTCGCGGCATCGGACGGCCGGCGGATGACCCTATCCTGGTGAAG
GTGGACAAGATCGTGCTCGATCGGGAGATTCGACGGCTGAACGCTTCCTT
CGACAATACGGTGTATGATTTGGTTATCGAGGGGGAGACATCGTCTGGGG
ACGATGCCGCCGATGACGGGATAGAAGTGACTGTAGCAGACCCGGGGGCG
GGGGGGAATCGGGACCAGGAGGAAGAGGAGGGGGCATCGGCAGGAGAGGG
AGGGGTAAAGGGGGGCGTACAGCAGCAGCAGAAGCCCGAGCGCCGCGAGC
TCGTCCTCGCGAACCAAAGTCGCCTACACCCCGGTGTATGATTTGGTTAT
CGAGGGGGAGACATCGTCTGGGGACGATGCCGCCGATGACGGGATAGAAG
TGACTGTAGCAGACCCGGGGGCGGGGGGGAATCGGGACCAGGAGGAAGAG
GAGGGGGCATCGGCAGGAGAGGGAGGGGTAAAGGGGGGCGTACAGCAGCA
GCAGAAGCCCGAGCGCCGCGAGCTCGTCCTCGCGAACCAAAGTCGCCTAC
ACCCCGTTTTCCGCACCCTCCTGAGCGTGAACTGGATAAGATACAAGGCC
GGTCGGAAGTACCCGATCCCCATCAAGTTCATCAACAACGACCTCAACGA
GAACTTCCGGAAGGGGGCGTACATCCGTAGGCGATTTTCCGCACCCTCCT
GAGCGTGAACTGGATAAGATACAAGGCCGGTCGGAAGTACCCGATCCCCA
TCAAGTTCATCAACAACGACCTCAACGAGAACTTCCGGAAGGGGGCGTAC
ATCCGTAGGCGAACCCACCAGCATATACTCCTCCCGGAGGACCCAGAAAT
GGTTCCCAAGTGGCTCTACTTGGATCTTGAGTTCGTTCGCTCGGGAAGCA
AGGTAAGCCAGCTGCCCTGCCCCGAATCTCTCCCTCGTCATACCCACCAG
CATATACTCCTCCCGGAGGACCCAGAAATGGTTCCCAAGTGGCTCTACTT
GGATCTTGAGTTCGTTCGCTCGGGAAGCAAGGTAAGCCAGCTGCCCTGCC
CCGAATCTCTCCCTCGTCAT
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