mRNA_E-fasciculatus_F_contig13057.2317.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13057.2317.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI) HSP 1 Score: 280 bits (716), Expect = 1.280e-87 Identity = 189/290 (65.17%), Postives = 204/290 (70.34%), Query Frame = 1
Query: 175 ALSNCENGYAGWQTNEACCSEFCGQCGGDGCGARGSADCCYENIISAGLVCGVDTLEAPCIIVAFTPAPLAEGETAAPLPAPTSAPPXXXXXXXXXXXXXXXXXXXPAAPVAPVAGXXXXXXXXXXXXXSPASRGVVGVPTPSPGGTVAPSETVXXXXXXXXXXXXXXXX--SATECGDGIEGFRTNVACCSASCGQCGGPGCENLEGGASECCPHDIIVAGNSCSDTGVAPCVIDTVEEVDXXXXXXXXXXXXXXXXX-----RGGRALLVVPWAVAALLSTAGFRRYN 1023
A SNCENGYAGWQ NEACCSEFCGQCGG GCG GSA CC++NII+AG VCGVD LEAPCII+ FTPAPLAEGETAAPLPAPTS XXXXXXXXXXXXXXXXXXX VA XXXXXXXX SP SRG VG PT SPGG+ AP E+V XXXXX S EC DGIEGFR VACCS SCGQCGG GCE LEGGA ECC HD++ +SCS+TG APCV+ V EVD RGGR LLV+PWAV+A+L+ AGFR YN
Sbjct: 178 ATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXX-XXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPGGSEAPQESVAXXXXXPVGGGVGTTPAPSTPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEGGALECCSHDVLTTNSSCSETGEAPCVLGPVSEVDGAADADTTTSSGRAANRIAGGGRGGRVLLVLPWAVSAMLNAAGFRLYN 466
BLAST of mRNA_E-fasciculatus_F_contig13057.2317.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE) HSP 1 Score: 267 bits (682), Expect = 1.540e-82 Identity = 176/290 (60.69%), Postives = 193/290 (66.55%), Query Frame = 1
Query: 175 ALSNCENGYAGWQTNEACCSEFCGQCGGDGCGARGSADCCYENIISAGLVCGVDTLEAPCIIVAFTPAPLAEGETAAPLPAPTSAPPXXXXXXXXXXXXXXXXXXXPAAPVAPVAGXXXXXXXXXXXXXSPASRGVVGVPTPSPGGTVAPSETVXXXXXXXXXXXXXXXX--SATECGDGIEGFRTNVACCSASCGQCGGPGCENLEGGASECCPHDIIVAGNSCSDTGVAPCVIDTVEEVDXXXXXXXXXXXXXXXXX-----RGGRALLVVPWAVAALLSTAGFRRYN 1023
A S CENGY GWQ+NEACCSEFCGQCGG GCG GSA CCY+NIISAGLVCGVD LEAPCII+ +TPAPLAEG T AP +A XXXXXXXXXXXXXXX XXXXXXXXX SP SRG VGVPTPSPGG+ AP E+V SA EC DGIEGFR VACCS SCGQCGG GCENLEGGASECC HD++ N CS++GVAPCV+ V +VD RG R LLV+PWAV+AL++TAGFR YN
Sbjct: 187 ASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVT-----APATA------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGVAPCVLGPVSQVDGAADADTTTSSGEAANRIAGGGRGVRVLLVLPWAVSALINTAGFRLYN 465
BLAST of mRNA_E-fasciculatus_F_contig13057.2317.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 7.140e-6 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 697 CGDGIEGFRTNVA--CCSASCGQCGGPGCENLEGGASECCPHDIIVAGNSCSDTGVAPCVID 876
C +G+ G + + CC ASCG CGG GC+ G A ECC +I+ G CS TG APC +D
Sbjct: 674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDE-RGAADECCTTEIMDYGQPCSVTGTAPCYLD 734
BLAST of mRNA_E-fasciculatus_F_contig13057.2317.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 8.180e-6 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 697 CGDGIEGFRTNVA--CCSASCGQCGGPGCENLEGGASECCPHDIIVAGNSCSDTGVAPCVID 876
C +G+ G + + CC ASCG CGG GC+ G A ECC +I+ G CS TG APC +D
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDE-RGAADECCTTEIMDYGQPCSVTGTAPCYLD 1237 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13057.2317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13057.2317.1 >prot_E-fasciculatus_F_contig13057.2317.1 ID=prot_E-fasciculatus_F_contig13057.2317.1|Name=mRNA_E-fasciculatus_F_contig13057.2317.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=342bp TPTAATATAPPSFSPTSGPQPTAAVATTAEPVAAAAPTASPAAAPTAGSFback to top mRNA from alignment at E-fasciculatus_F_contig13057:10..2772+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13057.2317.1 ID=mRNA_E-fasciculatus_F_contig13057.2317.1|Name=mRNA_E-fasciculatus_F_contig13057.2317.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2763bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13057:10..2772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13057:10..2772+ >mRNA_E-fasciculatus_F_contig13057.2317.1 ID=mRNA_E-fasciculatus_F_contig13057.2317.1|Name=mRNA_E-fasciculatus_F_contig13057.2317.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13057:10..2772+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |