mRNA_E-fasciculatus_F_contig13054.2316.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: D8LR61_ECTSI (PA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR61_ECTSI) HSP 1 Score: 508 bits (1309), Expect = 7.990e-178 Identity = 240/252 (95.24%), Postives = 246/252 (97.62%), Query Frame = 1
Query: 1 QRIVHGGVEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQ 756
+RIVHGGV+PG +VRTWTLCSDDDVKDV PMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASG+CNKS +TPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGK+AQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWN YGGEDAP DQ
Sbjct: 65 ERIVHGGVDPGQSVRTWTLCSDDDVKDV-PMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGICNKSGDTPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKSAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNTYGGEDAPLADQ 315
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A835YNB1_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB1_9STRA) HSP 1 Score: 299 bits (765), Expect = 1.100e-95 Identity = 148/255 (58.04%), Postives = 184/255 (72.16%), Query Frame = 1
Query: 1 QRIVHGGVEPGTAVRTWTLCSDDDV-KDVTPMVPTDSPFILMVDRG--DCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQ 756
QR+V+ PG +TLCSD + K V P PFIL+VDRG DCTF SKVR+AQH+GA GVII D+ C+C D G C + C+ VEPIMADDGSG DITIPSFLM KMD +IK+ L+ Q +QAEMTWSLPAPDDRVEWSLWTSA D++A FK +F++VV LG +A FTP+Y+VY+G+ YGC N+CG+LCTN GRYC DPDFD +G+SGAD+++E+LRQKC+W YGG+ A +Q
Sbjct: 59 QRLVY----PGNYTDPYTLCSDSEADKFVNPA----QPFILLVDRGGQDCTFVSKVRRAQHLGAAGVIIVDDRCICGD---GACASA--VACQPVEPIMADDGSGADITIPSFLMTKMDGNIIKSHLQANQFIQAEMTWSLPAPDDRVEWSLWTSAQDSAATAFKAEFRDVVTALGTHAYFTPHYIVYDGEEYGCRDD-TNHCGNLCTNAGRYCNPDPDFDRDSGLSGADIIQETLRQKCIWLHYGGDKASKGEQ 299
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A836CIN2_9STRA (PA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIN2_9STRA) HSP 1 Score: 288 bits (738), Expect = 4.920e-91 Identity = 146/254 (57.48%), Postives = 179/254 (70.47%), Query Frame = 1
Query: 1 QRIVHGGVEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRG--DCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQ 756
QR+V+ PG + + LCSD D T P + PFIL+VDRG DCTF SKVR+AQH+GA G IIAD+ C C +A C+ S CEQ+EPIMADDGSG DITIPSFLM K D LIK L+ + +Q EMTWSLPAPDDRVEWSLWT+A+D +AA FK + +V LG +A FTP+Y +Y+G+ YGC ++CG+LCTN GRYC DPDFD +G+SGADV+RE+LRQKC+W YGG AP DQ
Sbjct: 41 QRLVY----PGDFDQPYQLCSDVDAAKFTNPNP-NQPFILLVDRGGADCTFVSKVRRAQHLGAAGAIIADDRCKCAGDAQ--CDSS--VACEQLEPIMADDGSGADITIPSFLMTKTDGDLIKEHLKLKEFLQVEMTWSLPAPDDRVEWSLWTTAIDAAAAAFKGEMADVAAALGTHAFFTPHYTIYDGEEYGCRDD-THHCGNLCTNAGRYCNPDPDFDRDSGLSGADVIRETLRQKCIWLHYGGAQAPEADQ 284
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A4D9DEA6_9STRA (PA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEA6_9STRA) HSP 1 Score: 282 bits (721), Expect = 4.670e-89 Identity = 142/252 (56.35%), Postives = 171/252 (67.86%), Query Frame = 1
Query: 10 VHGG--VEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFEDQV 759
V+GG E T +CS +V SP+ILMVDRGDCTF +KVR AQH GA GV++ADN C+CKD A C+ +T C+ +EPIMADDGSG DITIPSFL+ K DA IK +L VQ EMTWSLP PDDRVEWSLWTSA D+S+A K +FKE + LG++ FTPYY VY+G +Y C ++CGSLCTN GRYCM DPD D G SG D+V E+LRQKC+WN YGGE+ E+ V
Sbjct: 42 VYGGFIAEKLYYANTTKMCSAPTADEVAQW---KSPYILMVDRGDCTFVTKVRHAQHAGASGVLVADNLCVCKDLA---CHPDPDTSCQGIEPIMADDGSGADITIPSFLLYKPDADAIKEKLRQESLVQVEMTWSLPTPDDRVEWSLWTSANDSSSAALKEEFKEAMAALGQHQYFTPYYQVYDGAAYNCVNF-PDHCGSLCTNHGRYCMPDPDKDPYHGYSGRDIVIENLRQKCIWNHYGGENTGKEEGV 286
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A6V1XHF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XHF6_HETAK) HSP 1 Score: 274 bits (701), Expect = 3.030e-86 Identity = 130/217 (59.91%), Postives = 159/217 (73.27%), Query Frame = 1
Query: 103 DSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDAPFED 753
++PFILM DRGDCTF SKVR+AQH GA GV+IADN CLC D A + + CE +EPIMADDGSG DITIP+FLMKK+DA L+K ++ GQ V AEM+W+LP PDDRVEW LWT+A+D A FK+DF+ V LG A FTP+YVVY+G+ CT ++ CG+LCTN GRYC+ DPD D G+SGADVV E+LRQ C+W YGG+ A D
Sbjct: 91 EAPFILMADRGDCTFVSKVRRAQHAGAAGVLIADNKCLCGDAAC-----TSQEACEPLEPIMADDGSGADITIPAFLMKKVDADLVKGQILQGQLVVAEMSWALPNPDDRVEWDLWTTAIDDGAQTFKQDFEVVTSKLGPRAYFTPHYVVYDGNELRCTTA-SDKCGNLCTNQGRYCLPDPDNDRHKGISGADVVEENLRQLCIWRAYGGDAANQAD 301
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A7S2UWY7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWY7_9STRA) HSP 1 Score: 266 bits (681), Expect = 4.460e-84 Identity = 127/233 (54.51%), Postives = 166/233 (71.24%), Query Frame = 1
Query: 55 LCSDDDVKDVTPMVPT----DSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTGGGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGEDA 741
+C+D DV M+P+ ++PFILM+DRGDCTF SKVR+AQH GA V+++D+ CLC G E PCE VEPIMADDGSG DI IP++L+KK+D+ LIK + G V AEM+W+LP PDDRVEW+LWTS++D A K DF E+ K LG+ A F P+Y++++G S CT ++CG+LCTN+GRYC+ DPD D G+SGAD+V ESLRQ C+W IYG +DA
Sbjct: 1 MCADSDVAVNKWMMPSPDAAETPFILMMDRGDCTFVSKVRRAQHAGAAAVLVSDHKCLC-----GEAKCVSEQPCESVEPIMADDGSGADIAIPAYLLKKVDSDLIKGIITQGTLVVAEMSWALPNPDDRVEWTLWTSSLDEGAELLKADFLEITKGLGRRAYFVPHYMIFDGVSLRCTDSD-DHCGNLCTNEGRYCLPDPDNDRSNGLSGADLVAESLRQLCIWKIYGSQDA 227
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: B8CDN1_THAPS (PA domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDN1_THAPS) HSP 1 Score: 258 bits (659), Expect = 1.110e-79 Identity = 125/217 (57.60%), Postives = 151/217 (69.59%), Query Frame = 1
Query: 91 MVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGED 738
M+P SP+ILMVDRG C+F KVR AQ +GA GVI+ADNTCLC A C+ CEQ EPIMADDGSG DI+IPSFLM K DA L+K + V+ EM WSLP+PDDRVE+ LWT+ DT + F++DFKE LGK A FTP +Y+G GC G G N+C +LCTN+GRYC TDPD D G+SGADVV+ESLR+ C+W YG +D
Sbjct: 118 MLPWPSPYILMVDRGGCSFTQKVRNAQRVGAAGVIMADNTCLCS--AGDSCHSDPGKDCEQREPIMADDGSGSDISIPSFLMFKQDADLVKAEVMANHVVRIEMQWSLPSPDDRVEYELWTTPTDTISRDFQKDFKEAAVALGKRAYFTPQMYIYDGIKSGCQGVDGENDCYNLCTNNGRYCATDPDNDLDRGISGADVVKESLRRMCIWQHYGQDD 332
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: B7G5X7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5X7_PHATC) HSP 1 Score: 256 bits (653), Expect = 9.390e-79 Identity = 129/234 (55.13%), Postives = 156/234 (66.67%), Query Frame = 1
Query: 55 LCSDDDV--------KDVTPMVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYG 729
LC DD+ K+ T M P SPF+LM+DRG CTF KVR AQHMGA GV+IADNTC+C D N + PCE EPIMADDGSG DI+IPSFL+ K DA I ++ + VQAEM WSLP+PDDRVE+ LWTS D +A F RD+K+V LG A FTP+ +++G+ GC G N C +LCTN GRYC TDPD D G+SG DVVRESLR+ C+W+ YG
Sbjct: 78 LCEIDDMSGGFPAREKEGTRMKPYPSPFLLMMDRGHCTFVQKVRNAQHMGASGVLIADNTCICSDTTCTAANPT--APCEMTEPIMADDGSGADISIPSFLLYKTDADKIIAEVKENRPVQAEMAWSLPSPDDRVEYDLWTSPSDGISAEFIRDWKDVAIALGDKAYFTPHMYLHDGEKSGCHAPNGDNYCFTLCTNAGRYCATDPDDDLTKGISGGDVVRESLRRICIWSHYG 309
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: K0R5E7_THAOC (PA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5E7_THAOC) HSP 1 Score: 253 bits (647), Expect = 5.350e-78 Identity = 124/217 (57.14%), Postives = 149/217 (68.66%), Query Frame = 1
Query: 91 MVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGED 738
M+P SP+ILMVDRG CTF KVR AQ +GA GVIIADNTCLC A C+ CE+ EPIMADDGSG DI+IPSFLM K DA +K L+ V+ EMTWSLP+PDDRVE+ LWT+ D + F++DFK LG A FTP +Y+G GC G G N+C +LC+N+GRYC TDPD D G+SGADVV ESLR+ CVW +YG +D
Sbjct: 109 MMPWQSPYILMVDRGGCTFVQKVRNAQRVGAAGVIIADNTCLCS--AGDQCHSDPGRDCEEREPIMADDGSGSDISIPSFLMFKEDADEVKAELQANHHVRIEMTWSLPSPDDRVEYELWTTPTDVISRDFQKDFKMAAVALGDRAYFTPQQYIYDGIRSGCQGIDGENDCFNLCSNNGRYCATDPDNDLDRGISGADVVGESLRRMCVWKLYGKKD 323
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Match: A0A7S2U9C5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9C5_9STRA) HSP 1 Score: 253 bits (647), Expect = 6.050e-78 Identity = 125/217 (57.60%), Postives = 147/217 (67.74%), Query Frame = 1
Query: 91 MVPTDSPFILMVDRGDCTFASKVRKAQHMGAIGVIIADNTCLCKDEASGVCNKSDETPCEQVEPIMADDGSGGDITIPSFLMKKMDATLIKNRLEGGQSVQAEMTWSLPAPDDRVEWSLWTSAMDTSAAPFKRDFKEVVKTLGKNAQFTPYYVVYNGDSYGCTG-GGANNCGSLCTNDGRYCMTDPDFDTKAGVSGADVVRESLRQKCVWNIYGGED 738
M P SP+ILMVDRG CTF +KVR AQ GA GVIIADNTCLC C CE EPIMADDGSG DI+IPSFLM K DA IK L V+ EM WSLP+PDDRVE+ LWT+ DT + F++ FK ++LGK+A FTP+ +Y+G GC G G N C +LCTN+GRYC TDPD D G+SGADVVRESLR+ C+W YG +D
Sbjct: 109 MAPWPSPYILMVDRGGCTFVNKVRNAQRSGAAGVIIADNTCLCSYGKE--CTSDRGVECETREPIMADDGSGADISIPSFLMFKQDADPIKAELMANHPVRMEMAWSLPSPDDRVEYDLWTTPSDTVSREFQKTFKPAAESLGKHAYFTPHMYIYDGIKSGCQGLNGENQCYNLCTNNGRYCATDPDNDLDKGISGADVVRESLRRTCIWKQYGEDD 323 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13054.2316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13054.2316.1 >prot_E-fasciculatus_F_contig13054.2316.1 ID=prot_E-fasciculatus_F_contig13054.2316.1|Name=mRNA_E-fasciculatus_F_contig13054.2316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=253bp QRIVHGGVEPGTAVRTWTLCSDDDVKDVTPMVPTDSPFILMVDRGDCTFAback to top mRNA from alignment at E-fasciculatus_F_contig13054:21..3705- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13054.2316.1 ID=mRNA_E-fasciculatus_F_contig13054.2316.1|Name=mRNA_E-fasciculatus_F_contig13054.2316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3685bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13054:21..3705- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13054:21..3705- >mRNA_E-fasciculatus_F_contig13054.2316.1 ID=mRNA_E-fasciculatus_F_contig13054.2316.1|Name=mRNA_E-fasciculatus_F_contig13054.2316.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13054:21..3705- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |