mRNA_E-fasciculatus_F_contig13053.2315.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A6H5L335_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L335_9PHAE) HSP 1 Score: 352 bits (902), Expect = 7.030e-114 Identity = 209/222 (94.14%), Postives = 210/222 (94.59%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKLRPRHFMLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSEG 669
+DGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQRRASVSDKVTLKRKS LAGSSFRIEGSAFVRKLSKLRPRHFMLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSE MRQRFRFEFLGEPGVDAGGVAREWFHLVSEG
Sbjct: 250 KDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPQQQ-----LQRRASVSDKVTLKRKSTLAGSSFRIEGSAFVRKLSKLRPRHFMLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSESMRQRFRFEFLGEPGVDAGGVAREWFHLVSEG 466
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A836CEL7_9STRA (Ubiquitin protein ligase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL7_9STRA) HSP 1 Score: 198 bits (504), Expect = 6.500e-56 Identity = 111/225 (49.33%), Postives = 133/225 (59.11%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKL----RPRHFMLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
Q+GWVRCVGTDLKFHW RHD GA P S+ KV GS+F + GSAFVR++ K RP M++LVRAEE LDA+VPE ++ FQHLS+ S PF+ K+ WF QCD LRVPW+ EHQHL++RR LLEDS+ A+ES+R MR+RFRFEF+GEPGVDAGGVAREWF LVSE
Sbjct: 224 QEGWVRCVGTDLKFHWARHD--GAAPDGKPSDTVLGGPSV-------------------------------GSLGAKVEH------LGSTFNVAGSAFVRRIGKDPETGRP---MVDLVRAEEVALDAAVPEISVNFQHLSKMSSRPFQQKLAWFRTQCDGLRVPWEREHQHLRLRREVLLEDSLRAIESIRPAQMRERFRFEFIGEPGVDAGGVAREWFQLVSE 406
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A6V1P524_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P524_HETAK) HSP 1 Score: 165 bits (417), Expect = 6.440e-45 Identity = 78/133 (58.65%), Postives = 102/133 (76.69%), Query Frame = 1
Query: 268 SSFRIEGSAFVRKLSKLRPRHFMLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
S F + SA+VR+L++ R + L LVRA++A ++A VPE ++ FQ L+R + F+ K +WF QC +LRVPWD+EHQHLK+RR+NLLEDSM A +V +E RQ FRFEF+GEPG+DAGGVAREWFHLVSE
Sbjct: 32 SKFDPQESAYVRQLTR-GERGYELRLVRAQDAVMEARVPETHVGFQDLTRVNAQTFEQKSEWFRNQCSILRVPWDIEHQHLKVRRSNLLEDSMTAFRAVPAEKCRQIFRFEFIGEPGIDAGGVAREWFHLVSE 163
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A7S3JWL0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWL0_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.840e-34 Identity = 88/236 (37.29%), Postives = 115/236 (48.73%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKLRPR------------HFMLELVRAEEATLDASVPEAN---LTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
+DGWVR + TDL FHWVR + + A A Q + S L + + + E AFVR+L K+ P H +++LVRAE+A L VP N Q LSR + +PF K WF +Q ++VPW+ H + IRR NLLEDSM A+ES+ M++ FRFEF+GEPGVDAGGVAREWF LVS+
Sbjct: 277 KDGWVRTLSTDLTFHWVRSESIAKEEATAIASNNNTVDSPSATSKND---------------------QNNSEPSSPQAL----LESNQGWTFEKIAFVREL-KIDPNKKDDQNAIKKNEHMIIDLVRAEDAALSTVVPAINNGTSLAQELSRYAAMPFHQKEAWFRQQIAKVQVPWEEGHIKINIRRENLLEDSMEAVESIAQNEMKKIFRFEFIGEPGVDAGGVAREWFQLVSD 486
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A4D9CYB2_9STRA (HECT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYB2_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.710e-33 Identity = 79/221 (35.75%), Postives = 109/221 (49.32%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKLRPRHFMLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
+DGWVRC+G D+KFHW R D + A V +L R F IE +AFVR K P+ L L+ E ++D +VP L F LS +QLPF K+++F + C+ LR PW+ H +++RR +LL DS+ A E + + MR+ FRFEFLGEPG+DAGGVAREW+ V++
Sbjct: 266 KDGWVRCLGQDVKFHWFRVDGSNREQGGTT----------------------------------------NAVVGVGGSLGRPK---NGKFSIENTAFVRAF-KGPPQSPDLVLLPPSEVSIDTTVPGTRLNFHTLSHGAQLPFDKKIEFFREHCNSLRTPWERGHMEIRVRRAHLLADSLMAFEGISTANMRKIFRFEFLGEPGIDAGGVAREWYDQVTD 442
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: F0YLG4_AURAN (HECT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLG4_AURAN) HSP 1 Score: 129 bits (325), Expect = 2.110e-31 Identity = 86/231 (37.23%), Postives = 112/231 (48.48%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKL-------RPRHFMLELVRAEEATLDASVPEAN---LTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
+DGW+RC+ TDL FHWVR + + AD SD + K+ + E +AFVR+L L + H L+LV A++A L VP N Q LSR + +PF+ K WF +Q L+VPW+ H + +RR NLLEDSM A ES+ MR+ FRFEF+ EPGVDAGGVAREWF LVS+
Sbjct: 36 KDGWIRCLSTDLTFHWVRSEAE-AD-------------------------------------------------SDHESKKK------LEWAFERTAFVRELRTLTVGTSTSKATH-SLQLVPAKDAALSTVVPAINNGTSLAQELSRYAAMPFQHKEAWFRQQIAKLQVPWEDGHIKINVRRENLLEDSMEATESITQADMRKIFRFEFIAEPGVDAGGVAREWFQLVSD 209
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: F0YHF6_AURAN (HECT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHF6_AURAN) HSP 1 Score: 129 bits (325), Expect = 6.220e-31 Identity = 85/231 (36.80%), Postives = 110/231 (47.62%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKL-------RPRHFMLELVRAEEATLDASVPEAN---LTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
+DGW+RC+ TDL FHWVR + + V + K+K A E +AFVR+L L + H L+LV A++A L VP N Q LSR + +PF+ K WF +Q L+VPW+ H + +RR NLLEDSM A ES+ MR+ FRFEF+ EPGVDAGGVAREWF LVS+
Sbjct: 265 KDGWIRCLSTDLTFHWVRSEGE---------------------------------------------------VDSEQEAKKKLEWA-----FEQTAFVRELRTLTVGTSTSKATH-SLQLVPAKDAALSTVVPAINNGTSLAQELSRYAAMPFQHKEAWFRQQIAKLQVPWEDGHIKINVRRENLLEDSMEATESITQADMRKIFRFEFIAEPGVDAGGVAREWFQLVSD 438
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A7S3ZRC6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRC6_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.060e-30 Identity = 85/230 (36.96%), Postives = 109/230 (47.39%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKL-------SKLRPRHFMLELVRAEEATLDASVPEAN---LTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVS 663
+DGWVRC+ TDL FHW+R E D + D L ++ E AFVR+L SK + H L+LV A+EA+L VP N Q LSR + +PF+ K WF +Q ++VPW+ H + +RR NLL+DSM A ES+ MR+ FRFEF+ EPGVDAGGVAREWF LVS
Sbjct: 248 KDGWVRCLSTDLTFHWIR-SEGEVD----------------------------------------------GQLKDSRDL---------TWAFERIAFVRELRSSATVSSKSKVDH-SLQLVPAKEASLSTVVPAINNGTSLAQELSRYAAMPFQHKEAWFRQQIAKIQVPWEDGHIKINVRRENLLQDSMEATESITQGDMRKIFRFEFISEPGVDAGGVAREWFQLVS 420
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A812YZK6_SYMMI (Nedd4 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YZK6_SYMMI) HSP 1 Score: 123 bits (309), Expect = 5.940e-30 Identity = 74/219 (33.79%), Postives = 104/219 (47.49%), Query Frame = 1
Query: 16 VRCVGTDLKFHWV-RHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKLSKLRPRHF-MLELVRAEEATLDASVPEANLTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVSE 666
+RC+G DL+FHWV H AD A + G SF I AFVRKL P L V A + +VP ++++ +S +++PF+ K +W Q +R PW+ H LK+RR +LL+DSM MES++S MR+ FRF+F+GEPG+DAGGVAREW++LV+E
Sbjct: 1 MRCLGEDLRFHWVYNHSTTLADAAISK---------------------------------------------------------GRSFDINKMAFVRKLDVPSPGAVGTLTFVEASSYAMSTTVPGTSVSYADISSVARMPFQQKSEWLKIQFTAIRTPWEEGHIKLKVRRASLLQDSMEGMESIQSGDMRKIFRFDFIGEPGLDAGGVAREWYNLVAE 162
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Match: A0A6S8T4N2_9STRA (Hypothetical protein n=12 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8T4N2_9STRA) HSP 1 Score: 126 bits (316), Expect = 9.900e-30 Identity = 85/230 (36.96%), Postives = 109/230 (47.39%), Query Frame = 1
Query: 4 QDGWVRCVGTDLKFHWVRHDEDGADPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRRASVSDKVTLKRKSMLAGSSFRIEGSAFVRKL-------SKLRPRHFMLELVRAEEATLDASVPEAN---LTFQHLSRASQLPFKDKVDWFNKQCDLLRVPWDVEHQHLKIRRNNLLEDSMAAMESVRSECMRQRFRFEFLGEPGVDAGGVAREWFHLVS 663
+DGWVRC+ TDL FHW+R E D + D L ++ E AFVR+L SK + H L+LV A+EA+L VP N Q LSR + +PF+ K WF +Q ++VPW+ H + +RR NLL+DSM A ES+ MR+ FRFEF+ EPGVDAGGVAREWF LVS
Sbjct: 248 KDGWVRCLSTDLTFHWIR-SEGEVD----------------------------------------------GQLKDSRDL---------TWAFERIAFVRELRSSATVSSKSKVDH-SLQLVPAKEASLSTVVPAINNGTSLAQELSRYAAMPFQHKEAWFRQQIAKIQVPWEDGHIKINVRRENLLQDSMEATESITQGDMRKIFRFEFISEPGVDAGGVAREWFQLVS 420 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13053.2315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13053.2315.1 >prot_E-fasciculatus_F_contig13053.2315.1 ID=prot_E-fasciculatus_F_contig13053.2315.1|Name=mRNA_E-fasciculatus_F_contig13053.2315.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=224bp MQDGWVRCVGTDLKFHWVRHDEDGADPAAAAAVAVDGEGEAGGSGAGAAAback to top mRNA from alignment at E-fasciculatus_F_contig13053:126..3268+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13053.2315.1 ID=mRNA_E-fasciculatus_F_contig13053.2315.1|Name=mRNA_E-fasciculatus_F_contig13053.2315.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3143bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13053:126..3268+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13053:126..3268+ >mRNA_E-fasciculatus_F_contig13053.2315.1 ID=mRNA_E-fasciculatus_F_contig13053.2315.1|Name=mRNA_E-fasciculatus_F_contig13053.2315.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13053:126..3268+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |