mRNA_E-fasciculatus_F_contig13052.2314.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13052.2314.1
Unique NamemRNA_E-fasciculatus_F_contig13052.2314.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: D7G204_ECTSI (PPPDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G204_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.180e-26
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRK 147
            VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDH+PRK
Sbjct:   11 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHEPRK 59          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A7S2WP56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP56_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.310e-14
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRK 147
            VTL+VYDLS VNE+ HP+G G++HSG+++  +EYTFAGG GIFD  P++
Sbjct:   23 VTLHVYDLSEVNEYMHPLGFGLYHSGIQIGDKEYTFAGGSGIFDMTPKE 71          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A835Z1G9_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.360e-14
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPR 144
            V LNVYDL+  NE+ H  G G++HSG+++ G+EYTFAGGGGIF H+P+
Sbjct:   14 VLLNVYDLNEANEYLHSTGFGLYHSGVQIGGKEYTFAGGGGIFSHEPK 61          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A7S2FEI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEI7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.460e-14
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRK 147
            V LNVYDL   NE+  P GLG+FH+G++V GREYTFAGGGG+FD  P++
Sbjct:   76 VLLNVYDLHDTNEYLEPFGLGLFHTGVQVGGREYTFAGGGGVFDMTPQE 124          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A7S2BXA3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BXA3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.050e-13
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPR 144
            V LNVYDLS  NE G+  GLG +HSG+E+  REYTFAGG GIFD  PR
Sbjct:   29 VVLNVYDLSEANELGYSCGLGAYHSGVEIGDREYTFAGGAGIFDTTPR 76          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A7S1YZ49_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZ49_TRICV)

HSP 1 Score: 67.4 bits (163), Expect = 9.320e-13
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRK 147
            V LN+YDL+P NE+ +PIG G+ HSG+E+ G EY+FA G G+FD  PR+
Sbjct:   14 VMLNLYDLTPANEYLYPIGFGLHHSGVEIGGTEYSFASGAGVFDSTPRE 62          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A7S1CA67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA67_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPR 144
            V LNVYDLSPVN++   +GLG FHSGLEV G EY+F  GGG+F H P+
Sbjct:   83 VYLNVYDLSPVNDYLWGLGLGAFHSGLEVYGTEYSFGAGGGVFSHPPK 130          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: K0RSF7_THAOC (PPPDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSF7_THAOC)

HSP 1 Score: 68.9 bits (167), Expect = 1.790e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRK 147
            V LNVYDLSP NE+   +GLG+ HSG+EV GREY+FA GGG+FD  P++
Sbjct:  108 VILNVYDLSPANEYLCSVGLGLHHSGVEVLGREYSFASGGGVFDSSPKE 156          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: B7FQG7_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQG7_PHATC)

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPR 144
            V LNVYDLSP N++ + IGLG+ HSG+EV G EY+FA G G+FD  P+
Sbjct:    1 VYLNVYDLSPANDYLYAIGLGLHHSGVEVSGTEYSFASGAGVFDSPPK 48          
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Match: A0A7S0NZZ1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZZ1_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 7.230e-12
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRK 147
            V LNVYDLSPVN++   +G+G++HSGLEV GRE+TF  G G+F+  PR+
Sbjct:   16 VVLNVYDLSPVNDYISWLGIGLYHSGLEVAGREWTFGSGSGVFECQPRE 64          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13052.2314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G204_ECTSI1.180e-2697.96PPPDE domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2WP56_9STRA4.310e-1461.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835Z1G9_9STRA7.360e-1460.42PPPDE putative peptidase domain-containing protein... [more]
A0A7S2FEI7_9STRA9.460e-1463.27Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2BXA3_9STRA2.050e-1366.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1YZ49_TRICV9.320e-1357.14Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1CA67_9STRA1.000e-1264.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K0RSF7_THAOC1.790e-1263.27PPPDE domain-containing protein n=1 Tax=Thalassios... [more]
B7FQG7_PHATC2.100e-1260.42Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S0NZZ1_9EUKA7.230e-1259.18Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13052contigE-fasciculatus_F_contig13052:3169..3321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7G204
EggNOG free text desc.Lys63-specific deubiquitinase activity
EggNOG OGsKOG0324@1,KOG0324@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.585695-CDS-E-fasciculatus_F_contig13052:3168..33211622927810.585695-CDS-E-fasciculatus_F_contig13052:3168..3321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13052 3169..3321 +
1695995704.2912576-CDS-E-fasciculatus_F_contig13052:3168..33211695995704.2912576-CDS-E-fasciculatus_F_contig13052:3168..3321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13052 3169..3321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13052.2314.1prot_E-fasciculatus_F_contig13052.2314.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13052 3169..3321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13052.2314.1

>prot_E-fasciculatus_F_contig13052.2314.1 ID=prot_E-fasciculatus_F_contig13052.2314.1|Name=mRNA_E-fasciculatus_F_contig13052.2314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=51bp
VTLNVYDLSPVNEFGHPIGLGVFHSGLEVDGREYTFAGGGGIFDHDPRKG
A
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mRNA from alignment at E-fasciculatus_F_contig13052:3169..3321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13052.2314.1 ID=mRNA_E-fasciculatus_F_contig13052.2314.1|Name=mRNA_E-fasciculatus_F_contig13052.2314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13052:3169..3321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCACGTTGAACGTGTACGACCTGAGCCCCGTCAACGAGTTCGGGCATCC GATCGGGCTGGGGGTGTTCCACAGCGGGCTAGAGGTAGACGGACGCGAGT ACACCTTCGCGGGAGGTGGCGGGATCTTCGACCATGACCCTAGAAAAGGT GCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13052:3169..3321+

>mRNA_E-fasciculatus_F_contig13052.2314.1 ID=mRNA_E-fasciculatus_F_contig13052.2314.1|Name=mRNA_E-fasciculatus_F_contig13052.2314.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13052:3169..3321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCACGTTGAACGTGTACGACCTGAGCCCCGTCAACGAGTTCGGGCATCC
GATCGGGCTGGGGGTGTTCCACAGCGGGCTAGAGGTAGACGGACGCGAGT
ACACCTTCGCGGGAGGTGGCGGGATCTTCGACCATGACCCTAGAAAAGGT
GCGGTCACGTTGAACGTGTACGACCTGAGCCCCGTCAACGAGTTCGGGCA
TCCGATCGGGCTGGGGGTGTTCCACAGCGGGCTAGAGGTAGACGGACGCG
AGTACACCTTCGCGGGAGGTGGCGGGATCTTCGACCATGACCCTAGAAAA
GGTGCG
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