mRNA_E-fasciculatus_F_contig13049.2311.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13049.2311.1
Unique NamemRNA_E-fasciculatus_F_contig13049.2311.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A6H5L4C1_9PHAE (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.790e-28
Identity = 58/62 (93.55%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:  196 RASRARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 381
            +A+RARAMVPMRPEEYAAQ+RTVR+VFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR
Sbjct:  125 KAARARAMVPMRPEEYAAQKRTVRQVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 186
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A1Z5KSI4_FISSO (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSI4_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 3.870e-13
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  208 ARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 381
            AR M PM  EEY AQQ T+REV+DE TGR+RLV+GTGEIIE +VSR + + I R A+R
Sbjct:  109 ARRMAPMSREEYQAQQSTIREVYDEQTGRYRLVRGTGEIIESLVSRSQHENINRQATR 166
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A058Z9J1_FONAL (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z9J1_FONAL)

HSP 1 Score: 69.3 bits (168), Expect = 5.920e-12
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:  115 PPPPLPPVTALGREGTGQ-KMNPPATAGRASRARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 381
            PPPP+P  ++ G +GT     +PPAT      A +  PM P +Y     T+ E +DE+TGR RLV+GTGEI+ERIVS+ +QQ+I + ++R
Sbjct:  104 PPPPVPTTSSSGAQGTQSIPRDPPATP-----AASFGPMTPAQYDKLYNTISEKYDEETGRMRLVRGTGEILERIVSKSQQQQINKQSTR 188
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A7S3LBW5_9STRA (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBW5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.790e-11
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  223 PMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHAS 378
            PM  EEY A + TVREV+DE +GR+RLV+GTGEIIERIVSRQ+ + I R A+
Sbjct:   39 PMTREEYEALRNTVREVYDEQSGRYRLVRGTGEIIERIVSRQDHESINRQAT 90
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A7S3Y5I9_HETAK (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5I9_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 8.460e-11
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  214 AMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQE 351
            AMVPMR EEY AQQ  VRE+ D +TGR RLVKG+GEIIERIVS++E
Sbjct:  106 AMVPMRREEYEAQQSVVREILDLETGRMRLVKGSGEIIERIVSKEE 151
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A1B6GJQ9_9HEMI (ADP-ribosylation factor-like protein 6-interacting protein 4 n=3 Tax=Proconiini TaxID=565685 RepID=A0A1B6GJQ9_9HEMI)

HSP 1 Score: 65.9 bits (159), Expect = 9.070e-11
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  205 RARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 381
            +A++M PM  EE+  QQ T+R V+DE+TGR RL++G GEIIE IVSR+  +EI R A+R
Sbjct:  112 KAQSMAPMSKEEWEKQQNTIRRVYDEETGRTRLIRGEGEIIEEIVSRERHKEINRQATR 170
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A7S4J1R6_9STRA (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J1R6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-10
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  196 RASRARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHAS 378
            +A+ +R+MVPM  EEY AQ+  +REV+D DTGR RLV+G GEIIERIVSR++   I R A+
Sbjct:  264 KAAASRSMVPMSREEYEAQRSVIREVYDPDTGRMRLVRGDGEIIERIVSREDHARINRLAT 324
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A7S2XU08_9STRA (ADP-ribosylation factor-like protein 6-interacting protein 4 n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU08_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.130e-10
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  187 TAGRASRARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 381
            T  +  R  AMVPM  E+Y AQQ  VREV+D ++GR+RLV+G+GEIIERIVSR    +I R A+R
Sbjct:  235 TKSKKERVAAMVPMTREQYEAQQAVVREVYDAESGRFRLVRGSGEIIERIVSRDAHAQINRVATR 299
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: E2BI88_HARSA (ADP-ribosylation factor-like protein 6-interacting protein 4 n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BI88_HARSA)

HSP 1 Score: 63.2 bits (152), Expect = 3.170e-10
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:  199 ASRARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHASR 381
            A +A+AM PM  EE+  +Q  VR+V+D++TGR+RL+KG GE++E IVSR   +EI R A++
Sbjct:   52 AEKAKAMAPMTKEEWEKRQSIVRKVYDKETGRYRLIKGDGEVLEEIVSRDHHREINRQATK 112
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Match: A0A0L7LR19_9NEOP (ADP-ribosylation factor-like protein 6-interacting protein 4 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LR19_9NEOP)

HSP 1 Score: 63.2 bits (152), Expect = 5.060e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  205 RARAMVPMRPEEYAAQQRTVREVFDEDTGRWRLVKGTGEIIERIVSRQEQQEIQRHAS 378
            ++RAM PM  EE+  +Q  VR V DEDTGR+RL+KG GE++E IVSR   +EI R A+
Sbjct:   75 KSRAMAPMTKEEWEKRQSVVRRVLDEDTGRYRLIKGDGEVLEEIVSRDRHKEINRKAN 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13049.2311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C1_9PHAE1.790e-2893.55ADP-ribosylation factor-like protein 6-interacting... [more]
A0A1Z5KSI4_FISSO3.870e-1363.79ADP-ribosylation factor-like protein 6-interacting... [more]
A0A058Z9J1_FONAL5.920e-1245.56ADP-ribosylation factor-like protein 6-interacting... [more]
A0A7S3LBW5_9STRA1.790e-1165.38ADP-ribosylation factor-like protein 6-interacting... [more]
A0A7S3Y5I9_HETAK8.460e-1173.91ADP-ribosylation factor-like protein 6-interacting... [more]
A0A1B6GJQ9_9HEMI9.070e-1155.93ADP-ribosylation factor-like protein 6-interacting... [more]
A0A7S4J1R6_9STRA1.200e-1059.02ADP-ribosylation factor-like protein 6-interacting... [more]
A0A7S2XU08_9STRA2.130e-1056.92ADP-ribosylation factor-like protein 6-interacting... [more]
E2BI88_HARSA3.170e-1050.82ADP-ribosylation factor-like protein 6-interacting... [more]
A0A0L7LR19_9NEOP5.060e-1055.17ADP-ribosylation factor-like protein 6-interacting... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13049contigE-fasciculatus_F_contig13049:575..1310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score69.7
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog691883.XP_009495798.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Nuclear RNA-splicing-associated protein
EggNOG OGs2CZX5@1,2SC00@2759,3A8UY@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13049.2311.1prot_E-fasciculatus_F_contig13049.2311.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13049 575..1310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.329929-CDS-E-fasciculatus_F_contig13049:574..7721622927810.329929-CDS-E-fasciculatus_F_contig13049:574..772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13049 575..772 +
1695995704.1925719-CDS-E-fasciculatus_F_contig13049:574..7721695995704.1925719-CDS-E-fasciculatus_F_contig13049:574..772Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13049 575..772 +
1622927810.3412752-CDS-E-fasciculatus_F_contig13049:885..9571622927810.3412752-CDS-E-fasciculatus_F_contig13049:885..957Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13049 886..957 +
1695995704.206584-CDS-E-fasciculatus_F_contig13049:885..9571695995704.206584-CDS-E-fasciculatus_F_contig13049:885..957Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13049 886..957 +
1622927810.3536475-CDS-E-fasciculatus_F_contig13049:1199..13101622927810.3536475-CDS-E-fasciculatus_F_contig13049:1199..1310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13049 1200..1310 +
1695995704.2186997-CDS-E-fasciculatus_F_contig13049:1199..13101695995704.2186997-CDS-E-fasciculatus_F_contig13049:1199..1310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13049 1200..1310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13049.2311.1

>prot_E-fasciculatus_F_contig13049.2311.1 ID=prot_E-fasciculatus_F_contig13049.2311.1|Name=mRNA_E-fasciculatus_F_contig13049.2311.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
RRGKRGRARKRARNTSESTRLLHRRQGLPLLQTPPLVLPPPPLPPVTALG
REGTGQKMNPPATAGRASRARAMVPMRPEEYAAQQRTVREVFDEDTGRWR
LVKGTGEIIERIVSRQEQQEIQRHASR
back to top

mRNA from alignment at E-fasciculatus_F_contig13049:575..1310+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13049.2311.1 ID=mRNA_E-fasciculatus_F_contig13049.2311.1|Name=mRNA_E-fasciculatus_F_contig13049.2311.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=736bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13049:575..1310+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAGAGGAAAAAGAGGAAGGGCGAGGAAAAGAGCAAGAAACACAAGCGA
AAGCACACGGCTGCTGCACAGACGGCAAGGTCTCCCACTCCTACAAACAC
CGCCGCTTGTACTACCGCCGCCACCGCTGCCTCCTGTCACTGCCCTGGGA
AGAGAAGGAACGGGGCAAAAGATGAATCCACCGGCGACTGCCGGCAGAGT
ACGGAGACCGGTGGCTGTCTTCCCTCATCTCGCAATAATCCCGCACGGGC
GCAAGACCCGGCACATGCCACCGAGGGTGATGCCGATAGACCGGAGGATA
GGGAAACCAAGGCATCGAGGGCAAGGGCGATGGTACCCATGAGGCCAGAG
GAGTATGCTGCACAGCAGAGGACAGTACGGGAGGTGGGTGGGTACAACGG
AGGAGAGAGAGAAAGAGAGAGAGACTTGACGGGGAGGAAGTAGAACGGAG
GGATCGTTCCGTCGCAGGGTGTGTTCACGTACCACGAGGAGCGAAAAGGA
AGGAGGCCAATGTGGCTTGCCTCTCAAGACTTGTCAGGTTTTGTTCCTCC
GCGATCGATGTTGATTGTTTGGCACAACACACACCACCAATACGTATCCA
CACCAACGTTTTGTCTGGGTAACAGGTTTTCGACGAAGACACTGGGCGGT
GGAGGTTAGTGAAAGGCACGGGAGAAATCATCGAGCGGATAGTCTCACGC
CAGGAGCAGCAGGAAATCCAACGGCACGCCTCCAGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13049:575..1310+

>mRNA_E-fasciculatus_F_contig13049.2311.1 ID=mRNA_E-fasciculatus_F_contig13049.2311.1|Name=mRNA_E-fasciculatus_F_contig13049.2311.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13049:575..1310+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAGAGGAAAAAGAGGAAGGGCGAGGAAAAGAGCAAGAAACACAAGCGA
AAGCACACGGCTGCTGCACAGACGGCAAGGTCTCCCACTCCTACAAACAC
CGCCGCTTGTACTACCGCCGCCACCGCTGCCTCCTGTCACTGCCCTGGGA
AGAGAAGGAACGGGGCAAAAGATGAATCCACCGGCGACTGCCGGCAGAAG
AAGAGGAAAAAGAGGAAGGGCGAGGAAAAGAGCAAGAAACACAAGCGAAA
GCACACGGCTGCTGCACAGACGGCAAGGTCTCCCACTCCTACAAACACCG
CCGCTTGTACTACCGCCGCCACCGCTGCCTCCTGTCACTGCCCTGGGAAG
AGAAGGAACGGGGCAAAAGATGAATCCACCGGCGACTGCCGGCAGAGCAT
CGAGGGCAAGGGCGATGGTACCCATGAGGCCAGAGGAGTATGCTGCACAG
CAGAGGACAGTACGGGAGGCATCGAGGGCAAGGGCGATGGTACCCATGAG
GCCAGAGGAGTATGCTGCACAGCAGAGGACAGTACGGGAGGTTTTCGACG
AAGACACTGGGCGGTGGAGGTTAGTGAAAGGCACGGGAGAAATCATCGAG
CGGATAGTCTCACGCCAGGAGCAGCAGGAAATCCAACGGCACGCCTCCAG
AGTTTTCGACGAAGACACTGGGCGGTGGAGGTTAGTGAAAGGCACGGGAG
AAATCATCGAGCGGATAGTCTCACGCCAGGAGCAGCAGGAAATCCAACGG
CACGCCTCCAGA
back to top