mRNA_E-fasciculatus_F_contig13048.2310.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13048.2310.1
Unique NamemRNA_E-fasciculatus_F_contig13048.2310.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13048.2310.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 1.920e-70
Identity = 115/126 (91.27%), Postives = 117/126 (92.86%), Query Frame = 2 
Query:    2 DGRQVEGGGG--GDRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVTIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGAGRTPPLTFLTLYGEHVEQWERWSEEAYEGWG 373
            DGRQVEGG G  G RGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDV+IWNVHSVEGAFRSDHRMPPAVDDFARGVPSS+ERGG GRTPPLTFLTLYGE    WERWSEEAYEGWG
Sbjct:  515 DGRQVEGGEGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSSERGGGGRTPPLTFLTLYGE----WERWSEEAYEGWG 636
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BLAST of mRNA_E-fasciculatus_F_contig13048.2310.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.840e-64
Identity = 107/116 (92.24%), Postives = 108/116 (93.10%), Query Frame = 2 
Query:    2 DGRQVEGGGG--GDRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVTIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGAGRTPPLTFLTLYGEHVEQWER 343
            DGRQVEGG G  G RGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDV+IWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGG GR PPLTFLTLYGEHVEQ  R
Sbjct:  558 DGRQVEGGEGRGGGRGRGGPFDLSVLCTAVNDVNHLLKATYPVDPRLADALLWDVDVSIWNVHSVEGAFRSDHRMPPAVDDFARGVPSSAERGGGGRPPPLTFLTLYGEHVEQLSR 673
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13048.2310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSI2_ECTSI1.920e-7091.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKJ1_9PHAE1.840e-6492.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13048contigE-fasciculatus_F_contig13048:2224..3588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_001740.2
Exons3
Model size459
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13048.2310.1prot_E-fasciculatus_F_contig13048.2310.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13048 2226..3588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.2607136-CDS-E-fasciculatus_F_contig13048:2225..23481622927810.2607136-CDS-E-fasciculatus_F_contig13048:2225..2348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13048 2226..2348 -
1695995704.162052-CDS-E-fasciculatus_F_contig13048:2225..23481695995704.162052-CDS-E-fasciculatus_F_contig13048:2225..2348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13048 2226..2348 -
1622927810.2709477-CDS-E-fasciculatus_F_contig13048:2804..29741622927810.2709477-CDS-E-fasciculatus_F_contig13048:2804..2974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13048 2805..2974 -
1695995704.1718383-CDS-E-fasciculatus_F_contig13048:2804..29741695995704.1718383-CDS-E-fasciculatus_F_contig13048:2804..2974Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13048 2805..2974 -
1622927810.2833216-CDS-E-fasciculatus_F_contig13048:3425..35881622927810.2833216-CDS-E-fasciculatus_F_contig13048:3425..3588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13048 3426..3588 -
1695995704.1819987-CDS-E-fasciculatus_F_contig13048:3425..35881695995704.1819987-CDS-E-fasciculatus_F_contig13048:3425..3588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13048 3426..3588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13048.2310.1

>prot_E-fasciculatus_F_contig13048.2310.1 ID=prot_E-fasciculatus_F_contig13048.2310.1|Name=mRNA_E-fasciculatus_F_contig13048.2310.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=152bp
RRQAGRGWRGGRPGPGRAVRPVGAVHRGQRREPPPQGHVPGGPEARGRLA
VGRRRHHLERAQRGGGLPLRPQDAPRGGRLREGSSVVSGEGRRRQDPPPH
LPDSLRGARGTVGTLVGGGLRGLGVGRRPPPPPPRQLGCRDSNGGGPGCG
RR
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mRNA from alignment at E-fasciculatus_F_contig13048:2224..3588-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13048.2310.1 ID=mRNA_E-fasciculatus_F_contig13048.2310.1|Name=mRNA_E-fasciculatus_F_contig13048.2310.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1365bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13048:2224..3588- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACGGCAGGCAGGTCGAGGGTGGCGGGGGGGGAGACCGGGGCCGGGGAG
GGCCGTTCGACCTGTCGGTGCTGTGCACCGCGGTCAACGACGTGAACCAC
CTCCTCAAGGCCACGTACCCGGTGGACCCGAGGCTCGCGGACGCCTTGCT
GTGGGACGTCGACGTGAGTTTTTGAGGGATCTCGGAACAAAGAAAGAAGA
ATGGGGTCTCCATGGCAGCATGGTTTATGTTTGACAAACAACGACGGCGG
TGTTGTAGCGATGCACGAAGGACCACATCCAGGCGGGCACAACGGCAGCA
AAGTGGGTTTTTTGTCGACCCACCACTAGTAGACAACGGGCATCGACCGG
GAATCTGCGATGCTCGTGTAGCCGGGCCACCGGCCGGGGTCGTTTCCGAC
AGTCTGCAAGTAGTGCATCGGTCGCCTTACACACCATCGCCTACATATGT
AAGTTTTTTCTCGTCGTCGTGTCGTTGCCATTCGGCACTCCCTTGTTCGA
CGCGCGTTTGTGTAGGCACACCCCAACACCAACACCAACACCAACACCAA
CACCAAACCTATCGTATCGTGTCGTCGCTTTTATCAACATATCGTTGTAC
CACCATGAGAAAAGGTCACCATCTGGAACGTGCACAGCGTGGAGGGGGCC
TTCCGCTCCGACCACAGGATGCCCCCCGCGGTGGACGACTTCGCGAGGGG
AGTTCCGTCGTCAGCGGAGAGGGGCGGCGCCGGCAGGACCCCCCCCCTCA
CCTTCCTGACTCTCTACGGGGAGCACGTGGAACAGTTAAGCCGTGTGTGT
GTATGTGTTTCTTTGTTGACACTGACAGCGCTGCTGACCGGCTGACCAAT
GAAAATGATGTCCGTCTCATATTATATGAAAGACGGGATAAGTAACGCGA
ACAAGTTTTCTAGTAGTGTTCGCGTGTGTTTGGGTTCGTCCCATGTATTA
TTTAACATGATAATAAAAAAAATGTTATCCAGGGAGCCTACACCTTACGG
TAGTATACGGTAGTATACGGTACCGCGGCCGGAATACCGTACGTGCGCCT
TCGGTTTCCTGTTTTATTTCAGCCTTGTGCTTCTTGTCGCGGCGCCTGTA
CCGTTGAGTGCTGCCTTGTTTTCCGGTATTGCTGTAGCTCTGGAATTTCA
TTTTTATGTTATTTTGTTCGTCTTTGCGGAATACGGAGTAGGAAGGAACA
ACAACAACAACAACAACAACTATCGTGTCTATCTATGAAGGTGGGAACGC
TGGTCGGAGGAGGCTTACGAGGGCTGGGGGTGGGACGCCGACCACCACCC
CCACCCCCACGGCAACTGGGATGCCGAGACAGCAACGGAGGAGGGCCAGG
GTGCGGAAGAAGAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13048:2224..3588-

>mRNA_E-fasciculatus_F_contig13048.2310.1 ID=mRNA_E-fasciculatus_F_contig13048.2310.1|Name=mRNA_E-fasciculatus_F_contig13048.2310.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13048:2224..3588- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACGGCAGGCAGGTCGAGGGTGGCGGGGGGGGAGACCGGGGCCGGGGAG
GGCCGTTCGACCTGTCGGTGCTGTGCACCGCGGTCAACGACGTGAACCAC
CTCCTCAAGGCCACGTACCCGGTGGACCCGAGGCTCGCGGACGCCTTGCT
GTGGGACGTCGACCGACGGCAGGCAGGTCGAGGGTGGCGGGGGGGGAGAC
CGGGGCCGGGGAGGGCCGTTCGACCTGTCGGTGCTGTGCACCGCGGTCAA
CGACGTGAACCACCTCCTCAAGGCCACGTACCCGGTGGACCCGAGGCTCG
CGGACGCCTTGCTGTGGGACGTCGACGTCACCATCTGGAACGTGCACAGC
GTGGAGGGGGCCTTCCGCTCCGACCACAGGATGCCCCCCGCGGTGGACGA
CTTCGCGAGGGGAGTTCCGTCGTCAGCGGAGAGGGGCGGCGCCGGCAGGA
CCCCCCCCCTCACCTTCCTGACTCTCTACGGGGAGCACGTGGAACAGTCA
CCATCTGGAACGTGCACAGCGTGGAGGGGGCCTTCCGCTCCGACCACAGG
ATGCCCCCCGCGGTGGACGACTTCGCGAGGGGAGTTCCGTCGTCAGCGGA
GAGGGGCGGCGCCGGCAGGACCCCCCCCCTCACCTTCCTGACTCTCTACG
GGGAGCACGTGGAACAGTGGGAACGCTGGTCGGAGGAGGCTTACGAGGGC
TGGGGGTGGGACGCCGACCACCACCCCCACCCCCACGGCAACTGGGATGC
CGAGACAGCAACGGAGGAGGGCCAGGGTGCGGAAGAAGAGTGGGAACGCT
GGTCGGAGGAGGCTTACGAGGGCTGGGGGTGGGACGCCGACCACCACCCC
CACCCCCACGGCAACTGGGATGCCGAGACAGCAACGGAGGAGGGCCAGGG
TGCGGAAGAAGA
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