mRNA_E-fasciculatus_F_contig13041.2305.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13041.2305.1
Unique NamemRNA_E-fasciculatus_F_contig13041.2305.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13041.2305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13041contigE-fasciculatus_F_contig13041:2537..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size535
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13041.2305.1prot_E-fasciculatus_F_contig13041.2305.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13041 2589..3002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927809.771716-UTR-E-fasciculatus_F_contig13041:2536..25881622927809.771716-UTR-E-fasciculatus_F_contig13041:2536..2588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13041 2537..2588 +
1695995703.8972023-UTR-E-fasciculatus_F_contig13041:2536..25881695995703.8972023-UTR-E-fasciculatus_F_contig13041:2536..2588Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13041 2537..2588 +
1622927809.799716-UTR-E-fasciculatus_F_contig13041:3002..30711622927809.799716-UTR-E-fasciculatus_F_contig13041:3002..3071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13041 3003..3071 +
1695995703.913691-UTR-E-fasciculatus_F_contig13041:3002..30711695995703.913691-UTR-E-fasciculatus_F_contig13041:3002..3071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13041 3003..3071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927809.784099-CDS-E-fasciculatus_F_contig13041:2588..30021622927809.784099-CDS-E-fasciculatus_F_contig13041:2588..3002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13041 2589..3002 +
1695995703.9053848-CDS-E-fasciculatus_F_contig13041:2588..30021695995703.9053848-CDS-E-fasciculatus_F_contig13041:2588..3002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13041 2589..3002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13041.2305.1

>prot_E-fasciculatus_F_contig13041.2305.1 ID=prot_E-fasciculatus_F_contig13041.2305.1|Name=mRNA_E-fasciculatus_F_contig13041.2305.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp
MHQLCRSHAVRSSAVPSPKPPFCCPGEPSCSRFSQSLMFTEVYSLSTKVI
FVSIMSLPCELHMRDTPIFERTQRATQQTALPTSLVLTPPTNLTSASANR
MFTLDERTRFSQDYCCTFPPAAPARYYRAIGTHCVDA*
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mRNA from alignment at E-fasciculatus_F_contig13041:2537..3071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13041.2305.1 ID=mRNA_E-fasciculatus_F_contig13041.2305.1|Name=mRNA_E-fasciculatus_F_contig13041.2305.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=535bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13041:2537..3071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGATCGCATGCAAGCGCTGGGTTGATGCGTGGGTGCACGTCAAACTGA
TCATGCACCAATTGTGCAGGTCGCATGCTGTGCGATCCTCTGCTGTCCCA
TCACCCAAGCCCCCCTTCTGCTGTCCTGGAGAGCCGTCCTGCTCCCGGTT
CAGTCAGAGTTTGATGTTCACAGAAGTTTATAGTCTATCCACGAAAGTAA
TTTTTGTGTCGATCATGTCCTTACCTTGCGAACTGCACATGCGCGACACC
CCGATTTTTGAAAGGACACAACGCGCCACTCAACAGACTGCACTCCCAAC
ATCACTGGTGCTCACTCCCCCAACCAATCTTACGTCAGCTAGTGCGAATC
GTATGTTTACGTTGGATGAACGCACCAGGTTCTCGCAGGACTACTGCTGT
ACTTTTCCGCCTGCGGCGCCTGCCCGTTACTATAGAGCTATTGGAACCCA
CTGCGTAGATGCGTAGTACTGCCCACATCTGATCCCGTATATCAAGTCAA
GTTCTCGGCGGCGCCTTTGATTCCTGGAATGCCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13041:2537..3071+

>mRNA_E-fasciculatus_F_contig13041.2305.1 ID=mRNA_E-fasciculatus_F_contig13041.2305.1|Name=mRNA_E-fasciculatus_F_contig13041.2305.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13041:2537..3071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACCAATTGTGCAGGTCGCATGCTGTGCGATCCTCTGCTGTCCCATC
ACCCAAGCCCCCCTTCTGCTGTCCTGGAGAGCCGTCCTGCTCCCGGTTCA
GTCAGAGTTTGATGTTCACAGAAGTTTATAGTCTATCCACGAAAGTAATT
TTTGTGTCGATCATGTCCTTACCTTGCGAACTGCACATGCGCGACACCCC
GATTTTTGAAAGGACACAACGCGCCACTCAACAGACTGCACTCCCAACAT
CACTGGTGCTCACTCCCCCAACCAATCTTACGTCAGCTAGTGCGAATCGT
ATGTTTACGTTGGATGAACGCACCAGGTTCTCGCAGGACTACTGCTGTAC
TTTTCCGCCTGCGGCGCCTGCCCGTTACTATAGAGCTATTGGAACCCACT
GCGTAGATGCGTAGATGCACCAATTGTGCAGGTCGCATGCTGTGCGATCC
TCTGCTGTCCCATCACCCAAGCCCCCCTTCTGCTGTCCTGGAGAGCCGTC
CTGCTCCCGGTTCAGTCAGAGTTTGATGTTCACAGAAGTTTATAGTCTAT
CCACGAAAGTAATTTTTGTGTCGATCATGTCCTTACCTTGCGAACTGCAC
ATGCGCGACACCCCGATTTTTGAAAGGACACAACGCGCCACTCAACAGAC
TGCACTCCCAACATCACTGGTGCTCACTCCCCCAACCAATCTTACGTCAG
CTAGTGCGAATCGTATGTTTACGTTGGATGAACGCACCAGGTTCTCGCAG
GACTACTGCTGTACTTTTCCGCCTGCGGCGCCTGCCCGTTACTATAGAGC
TATTGGAACCCACTGCGTAGATGCGTAG
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