mRNA_E-fasciculatus_F_contig1304.2304.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1304.2304.1 vs. uniprot
Match: D7FTS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS0_ECTSI) HSP 1 Score: 615 bits (1587), Expect = 1.430e-221 Identity = 329/341 (96.48%), Postives = 335/341 (98.24%), Query Frame = 1
Query: 1 MLSRVANAGARGALRARLPALSAGGRARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPFALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGAGVGKYFDDKTAEIKHAQQSAEQEQIKRVTGELATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMAAPHMSRESTVKLLEALKGAKIKRVADLRAAEIATALTEVVAKVSADKKLKKAALDNALVTLADPSKAAKVDPVSQVFAQYWKQKAVDTEKNKNKPVALTPEQIAANEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS 1023
MLSRVANAGARGALRARLPA SAGGRARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVP ALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGG GVGKYFDD+TAEIK AQQSAEQEQIKRVTG+LATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMAAPHMSRESTVKLLEAL+GAKIKRVADLR AEIATALTEVVAKVSADKKLKKAALDNAL+TLADPSKAAKVDPVS+VFAQYWKQKA+DTEKNKNKPVALTPEQIA NEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS
Sbjct: 1 MLSRVANAGARGALRARLPAASAGGRARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPLALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGEGVGKYFDDQTAEIKRAQQSAEQEQIKRVTGDLATEKARLVEMQQMDAISKAIAYGNTRRNEAEAMAAPHMSRESTVKLLEALRGAKIKRVADLRNAEIATALTEVVAKVSADKKLKKAALDNALMTLADPSKAAKVDPVSEVFAQYWKQKAIDTEKNKNKPVALTPEQIATNEADIRSLCEKVGQDPAMLLASMPKTYTADTPTLFS 341
BLAST of mRNA_E-fasciculatus_F_contig1304.2304.1 vs. uniprot
Match: A0A836CD66_9STRA (ATP synthase subunit b n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD66_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.240e-25 Identity = 88/279 (31.54%), Postives = 139/279 (49.82%), Query Frame = 1
Query: 79 ARVPPLIQPAFQSFHAGLPSRESAVDKPAPSRAEDIEANKNAKLFGDNPRLEGMIEAGKLDSAKRLVPFALFLTVPALCREWYVMTEETMLMGCFFLFLGAAMDFGGAGVGKYFDDKTAEIKHAQQSAEQEQIKRVTGELATEKARLVE---MQQMDAISKAIAYGNTRRNEAEAMAA--PHMSRESTVKLLEALKGAKIKRVADLRAAEIATALTEVVAKVSADKKLKKAALDNALVTLADPSKAAKVDPVSQVFAQYWKQKAVDTEKNKNKPVALTP 900
AR+ P PA Q FHAG+P+R+ E+ + + +K+ + +E L R +P L L +PAL +EW V++EET L+GCF LF+G G +G D + I A+ E I+ + +A ARL M + A+ + T +A+ + PH RE TV +L+ A+ + A + +A+ V +V +DKKLKK ALD AL++LADP+KA D V+ +F Q++K + +K ++ +TP
Sbjct: 17 ARLAPRTAPATQHFHAGIPARK-----------EETQPAETSKILLTPGTI---VEKLGLHDWTRALPVGLILAIPALNQEWIVLSEETQLLGCFMLFVGTIYTKFGDSIGAALDAQADAILDARNKEEDASIEVIKETIAFHHARLASAGIMSDLIALER-----ETMEKQAKLLTVKVPHDMRELTVAMLDTKAAAEANEWHAAQDALVKSAVDTVTEQVQSDKKLKKTALDEALLSLADPAKAPATDAVTGLFTQFFKDTSAQAQKEASQEKTVTP 276 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1304.2304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1304.2304.1 >prot_E-fasciculatus_F_contig1304.2304.1 ID=prot_E-fasciculatus_F_contig1304.2304.1|Name=mRNA_E-fasciculatus_F_contig1304.2304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=342bp MLSRVANAGARGALRARLPALSAGGRARVPPLIQPAFQSFHAGLPSRESAback to top mRNA from alignment at E-fasciculatus_F_contig1304:12189..17876+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1304.2304.1 ID=mRNA_E-fasciculatus_F_contig1304.2304.1|Name=mRNA_E-fasciculatus_F_contig1304.2304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5688bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1304:12189..17876+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1304:12189..17876+ >mRNA_E-fasciculatus_F_contig1304.2304.1 ID=mRNA_E-fasciculatus_F_contig1304.2304.1|Name=mRNA_E-fasciculatus_F_contig1304.2304.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1304:12189..17876+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |